Guide Gene
- Gene ID
- Mapoly0139s0011
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [KOG2554] Pseudouridylate synthase; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0139s0011 [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [KOG2554] Pseudouridylate synthase; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity 0.00 1.0000 1 Mapoly0162s0014 [PTHR32133] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF00646] F-box domain 3.16 0.6929 2 Mapoly0026s0056 [PTHR30007] PHP DOMAIN PROTEIN; [K07053] TatD-related deoxyribonuclease; [GO:0003824] catalytic activity; [PF02811] PHP domain 21.35 0.6861 3 Mapoly0012s0127 [GO:0008759] UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity; [GO:0009245] lipid A biosynthetic process; [PF03331] UDP-3-O-acyl N-acetylglycosamine deacetylase 30.45 0.5921 4 Mapoly0036s0146 [KOG1803] DNA helicase; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [PF13086] AAA domain; [PF13087] AAA domain; [PTHR10887:SF140] SUBFAMILY NOT NAMED 35.24 0.6601 5 Mapoly0029s0122 [PTHR15565:SF0] PROTEIN AATF (APOPTOSIS-ANTAGONIZING TRANSCRIPTION FACTOR); [PF13339] Apoptosis antagonizing transcription factor; [GO:0005634] nucleus; [KOG2773] Apoptosis antagonizing transcription factor/protein transport protein; [PTHR15565] AATF PROTEIN (APOPTOSIS ANTAGONIZING TRANSCRIPTION FACTOR); [PF08164] Apoptosis-antagonizing transcription factor, C-terminal 38.50 0.6820 6 Mapoly0056s0087 [PF02897] Prolyl oligopeptidase, N-terminal beta-propeller domain; [GO:0008236] serine-type peptidase activity; [GO:0070008] serine-type exopeptidase activity; [GO:0004252] serine-type endopeptidase activity; [GO:0006508] proteolysis; [PTHR11757] PROTEASE FAMILY S9A OLIGOPEPTIDASE; [PF00326] Prolyl oligopeptidase family; [KOG2237] Predicted serine protease 46.66 0.6593 7 Mapoly0002s0051 [PF03205] Molybdopterin guanine dinucleotide synthesis protein B; [PTHR12755] CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P; [PF06807] Pre-mRNA cleavage complex II protein Clp1 47.75 0.6608 8 Mapoly0001s0040 [PTHR12466:SF8] SUBFAMILY NOT NAMED; [PF05179] RNA pol II accessory factor, Cdc73 family; [KOG3786] RNA polymerase II assessory factor Cdc73p; [PTHR12466] CDC73 DOMAIN PROTEIN 48.91 0.6810 9 Mapoly0006s0036 [KOG3164] Uncharacterized proteins of PilT N-term./Vapc superfamily; [PF04900] Fcf1; [PTHR12416] UNCHARACTERIZED; [GO:0032040] small-subunit processome 59.06 0.6548 10 Mapoly0036s0026 [PF15375] Domain of unknown function (DUF4602) 68.41 0.6499 11 Mapoly0023s0079 [PTHR23245] UNCHARACTERIZED; [PF02475] Met-10+ like-protein; [GO:0016740] transferase activity; [KOG2078] tRNA modification enzyme 68.64 0.6261 12 Mapoly0306s0002 [KOG1988] Uncharacterized conserved protein; [K13144] integrator complex subunit 7; [PTHR13322] C1ORF73 PROTEIN; [PTHR13322:SF2] SUBFAMILY NOT NAMED 70.00 0.6492 13 Mapoly0015s0022 [GO:0005634] nucleus; [PTHR12722] XAP-5 PROTEIN-RELATED; [PF04921] XAP5, circadian clock regulator; [K13119] protein FAM50; [KOG2894] Uncharacterized conserved protein XAP-5 76.50 0.6365 14 Mapoly0057s0032 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PTHR22807:SF4] WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN 20; [PF01189] NOL1/NOP2/sun family; [KOG2360] Proliferation-associated nucleolar protein (NOL1) 77.54 0.6462 15 Mapoly0165s0012 [PF08640] U3 small nucleolar RNA-associated protein 6; [KOG2396] HAT (Half-A-TPR) repeat-containing protein; [K14557] U3 small nucleolar RNA-associated protein 6; [PTHR23271] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 66 80.14 0.6441 16 Mapoly0074s0052 [KOG3237] Uncharacterized conserved protein; [PTHR12838] U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11; [GO:0006364] rRNA processing; [GO:0032040] small-subunit processome; [PF03998] Utp11 protein 81.98 0.6425 17 Mapoly0025s0011 [GO:0003723] RNA binding; [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [KOG1122] tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2); [PF01472] PUA domain; [PF01189] NOL1/NOP2/sun family 83.79 0.5671 18 Mapoly0019s0056 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 88.37 0.6483 19 Mapoly0076s0049 [GO:0016272] prefoldin complex; [PF02996] Prefoldin subunit; [KOG3048] Molecular chaperone Prefoldin, subunit 5; [GO:0006457] protein folding; [PTHR15111] RNA POLYMERASE II SUBUNIT 5-MEDIATING PROTEIN (NNX3); [PTHR15111:SF0] SUBFAMILY NOT NAMED; [GO:0051082] unfolded protein binding 95.67 0.6181 20 Mapoly0033s0026 [K11799] WD repeat-containing protein 21A; [GO:0005515] protein binding; [PTHR19845] KATANIN P80 SUBUNIT; [PF00400] WD domain, G-beta repeat 95.83 0.6407 21 Mapoly0012s0210 [PTHR13486:SF2] SUBFAMILY NOT NAMED; [KOG3345] Uncharacterized conserved protein; [PF07052] Hepatocellular carcinoma-associated antigen 59; [PTHR13486] FAMILY NOT NAMED 95.87 0.6314 22 Mapoly0002s0233 [GO:0008168] methyltransferase activity; [KOG2899] Predicted methyltransferase; [PF06859] Bicoid-interacting protein 3 (Bin3); [PTHR12315:SF0] SUBFAMILY NOT NAMED; [PTHR12315] BICOID-INTERACTING PROTEIN RELATED 96.34 0.6208 23 Mapoly0090s0008 [GO:0003677] DNA binding; [PTHR12780:SF0] SUBFAMILY NOT NAMED; [K03025] DNA-directed RNA polymerase III subunit RPC6; [PF05158] RNA polymerase Rpc34 subunit; [GO:0006351] transcription, DNA-dependent; [PTHR12780] RNA POLYMERASE III (DNA DIRECTED), 39KD SUBUNIT-RELATED; [KOG3233] RNA polymerase III, subunit C34; [GO:0003899] DNA-directed RNA polymerase activity; [2.7.7.6] DNA-directed RNA polymerase. 96.51 0.6317 24 Mapoly0163s0014 [PF00168] C2 domain; [PTHR32246] FAMILY NOT NAMED; [GO:0005515] protein binding 97.54 0.5786 25 Mapoly0116s0021 - 101.88 0.6096 26 Mapoly0008s0193 [PTHR24031:SF54] SUBFAMILY NOT NAMED; [GO:0005524] ATP binding; [KOG0343] RNA Helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF13959] Domain of unknown function (DUF4217) 101.96 0.6424 27 Mapoly0036s0122 [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED 102.88 0.6288 28 Mapoly3498s0001 - 106.84 0.6296 29 Mapoly0066s0113 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [K13127] RING finger protein 113A; [KOG1813] Predicted E3 ubiquitin ligase; [PTHR12930] ZINC FINGER PROTEIN 183; [GO:0046872] metal ion binding; [PF13920] Zinc finger, C3HC4 type (RING finger) 108.07 0.6360 30 Mapoly0139s0010 [GO:0016020] membrane; [PF00072] Response regulator receiver domain; [PF02518] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [GO:0000160] phosphorelay signal transduction system; [GO:0007165] signal transduction; [PTHR24423] TWO-COMPONENT SENSOR HISTIDINE KINASE; [PF00512] His Kinase A (phospho-acceptor) domain; [GO:0000155] phosphorelay sensor kinase activity 108.86 0.5487 31 Mapoly0078s0043 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 110.25 0.6407 32 Mapoly0164s0016 [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold 114.47 0.5703 33 Mapoly0131s0002 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF00069] Protein kinase domain; [PF08263] Leucine rich repeat N-terminal domain; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [PF00560] Leucine Rich Repeat; [GO:0006468] protein phosphorylation; [PTHR24420:SF150] SUBFAMILY NOT NAMED; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 115.75 0.5507 34 Mapoly0039s0118 [PF13516] Leucine Rich repeat; [PTHR24106] FAMILY NOT NAMED 117.11 0.5570 35 Mapoly0121s0015 [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 117.30 0.6182 36 Mapoly0131s0007 [PF14937] Domain of unknown function (DUF4500) 117.47 0.5660 37 Mapoly0031s0174 [GO:0008168] methyltransferase activity; [GO:0005507] copper ion binding; [PTHR21320] CYTOCHROME C OXIDASE ASSEMBLY PROTEIN COX11-RELATED; [GO:0006412] translation; [PF09243] Mitochondrial small ribosomal subunit Rsm22 117.73 0.6348 38 Mapoly0031s0039 [GO:0003677] DNA binding; [PTHR13408] DNA-DIRECTED RNA POLYMERASE III; [PF05132] RNA polymerase III RPC4; [PTHR13408:SF0] SUBFAMILY NOT NAMED; [GO:0005666] DNA-directed RNA polymerase III complex; [GO:0003899] DNA-directed RNA polymerase activity; [GO:0006383] transcription from RNA polymerase III promoter 117.79 0.5892 39 Mapoly0033s0012 [GO:0005524] ATP binding; [2.5.1.75] tRNA dimethylallyltransferase.; [PTHR11088] TRNA DELTA(2)-ISOPENTENYLPYROPHOSPHATE TRANSFERASE-RELATED; [K00791] tRNA dimethylallyltransferase [EC:2.5.1.75]; [GO:0008033] tRNA processing; [PF01715] IPP transferase 120.93 0.5848 40 Mapoly0096s0059 - 121.20 0.6221 41 Mapoly0093s0033 [PTHR22939] SERINE PROTEASE FAMILY S1C HTRA-RELATED; [GO:0005515] protein binding; [PF13180] PDZ domain; [KOG1320] Serine protease; [PTHR22939:SF1] SERINE ENDOPEPTIDASE DEGP2; [PF13365] Trypsin-like peptidase domain 121.41 0.6326 42 Mapoly0054s0116 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PTHR13710] DNA HELICASE RECQ FAMILY MEMBER; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [GO:0003676] nucleic acid binding 122.82 0.6221 43 Mapoly0009s0169 [GO:0006355] regulation of transcription, DNA-dependent; [PF04494] WD40 associated region in TFIID subunit; [GO:0005515] protein binding; [K03130] transcription initiation factor TFIID subunit 5; [GO:0005634] nucleus; [PTHR19879] TRANSCRIPTION INITIATION FACTOR TFIID; [KOG0263] Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA); [PTHR19879:SF1] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat 125.36 0.6390 44 Mapoly0149s0015 [GO:0005524] ATP binding; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23077] AAA-FAMILY ATPASE; [KOG0730] AAA+-type ATPase 129.03 0.6311 45 Mapoly0007s0016 - 131.29 0.6016 46 Mapoly0051s0055 [PTHR18359] WD-REPEAT PROTEIN-RELATED; [GO:0005515] protein binding; [KOG2055] WD40 repeat protein; [K14553] U3 small nucleolar RNA-associated protein 18; [PF00400] WD domain, G-beta repeat 131.69 0.6275 47 Mapoly0041s0094 [3.1.26.5] Ribonuclease P.; [PTHR13031] RIBONUCLEASE P-RELATED; [K03539] ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]; [KOG2363] Protein subunit of nuclear ribonuclease P (RNase P); [GO:0008033] tRNA processing; [PF01876] RNase P subunit p30; [GO:0004540] ribonuclease activity 132.17 0.6289 48 Mapoly0023s0152 [PTHR21392:SF0] SUBFAMILY NOT NAMED; [PTHR21392] UNCHARACTERIZED; [KOG4382] Uncharacterized conserved protein, contains DTW domain; [PF03942] DTW domain 133.00 0.6058 49 Mapoly0080s0066 [PTHR11804] PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED; [GO:0004222] metalloendopeptidase activity; [K01392] thimet oligopeptidase [EC:3.4.24.15]; [KOG2089] Metalloendopeptidase family - saccharolysin & thimet oligopeptidase; [PF01432] Peptidase family M3; [GO:0006508] proteolysis; [3.4.24.15] Thimet oligopeptidase. 133.76 0.6194 50 Mapoly0032s0165 [PF12847] Methyltransferase domain; [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [K11436] protein arginine N-methyltransferase 3 [EC:2.1.1.-]; [PTHR11006] PROTEIN ARGININE N-METHYLTRANSFERASE; [GO:0006479] protein methylation; [KOG1499] Protein arginine N-methyltransferase PRMT1 and related enzymes 136.24 0.6257