Guide Gene

Gene ID
Mapoly0057s0025
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [K06173] tRNA pseudouridine synthase A [EC:5.4.99.12]; [GO:0001522] pseudouridine synthesis; [KOG2553] Pseudouridylate synthase; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity; [5.4.99.12] tRNA pseudouridine(38-40) synthase.

Coexpressed Gene Network

Gene ID Description Information
Mapoly0009s0077 [PTHR14927:SF0] SUBFAMILY NOT NAMED; [KOG2321] WD40 repeat protein; [PTHR14927] UNCHARACTERIZED; [GO:0005634] nucleus; [PF08159] NUC153 domain
Mapoly0009s0141 [PF05022] SRP40, C-terminal domain; [PTHR23216] NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1
Mapoly0010s0191 [PF04055] Radical SAM superfamily; [PTHR13930] RSAFD1-RELATED; [PF00258] Flavodoxin; [PF08608] Wyosine base formation; [GO:0016491] oxidoreductase activity; [PTHR13930:SF0] SUBFAMILY NOT NAMED; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding; [KOG1160] Fe-S oxidoreductase; [GO:0010181] FMN binding
Mapoly0021s0013 [PTHR19853] WD REPEAT CONTAINING PROTEIN 3 (WDR3); [GO:0005515] protein binding; [PF04003] Dip2/Utp12 Family; [KOG0306] WD40-repeat-containing subunit of the 18S rRNA processing complex; [PTHR19853:SF0] SUBFAMILY NOT NAMED; [K14556] U3 small nucleolar RNA-associated protein 12; [PF00400] WD domain, G-beta repeat
Mapoly0024s0107 [PF07719] Tetratricopeptide repeat; [GO:0005515] protein binding; [PF13414] TPR repeat; [K03350] anaphase-promoting complex subunit 3; [KOG1126] DNA-binding cell division cycle control protein; [PF13181] Tetratricopeptide repeat; [PF00515] Tetratricopeptide repeat; [PTHR12558] CELL DIVISION CYCLE 16,23,27; [PTHR12558:SF11] CELL DIVISION CYCLE 27; [PF12895] Anaphase-promoting complex, cyclosome, subunit 3
Mapoly0025s0073 [PTHR17605] RIBOSOME BIOGENESIS PROTEIN BOP1 (BLOCK OF PROLIFERATION 1 PROTEIN); [GO:0005515] protein binding; [GO:0006364] rRNA processing; [KOG0650] WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis; [PF00400] WD domain, G-beta repeat; [PF08145] BOP1NT (NUC169) domain
Mapoly0029s0120 [PF05178] KRI1-like family; [KOG2409] KRR1-interacting protein involved in 40S ribosome biogenesis; [PTHR14490] ZINC FINGER, ZZ TYPE; [PF12936] KRI1-like family C-terminal
Mapoly0032s0003 [PF05178] KRI1-like family; [KOG2409] KRR1-interacting protein involved in 40S ribosome biogenesis; [PTHR14490] ZINC FINGER, ZZ TYPE; [PF12936] KRI1-like family C-terminal
Mapoly0034s0108 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [KOG1122] tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2); [PF01189] NOL1/NOP2/sun family
Mapoly0039s0098 [PF13812] Pentatricopeptide repeat domain; [PF01713] Smr domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family
Mapoly0041s0093 [PF09368] Sas10 C-terminal domain; [PF04000] Sas10/Utp3/C1D family; [PTHR13237] SOMETHING ABOUT SILENCING PROTEIN 10-RELATED; [KOG3118] Disrupter of silencing SAS10
Mapoly0057s0025 [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [K06173] tRNA pseudouridine synthase A [EC:5.4.99.12]; [GO:0001522] pseudouridine synthesis; [KOG2553] Pseudouridylate synthase; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity; [5.4.99.12] tRNA pseudouridine(38-40) synthase.
Mapoly0060s0020 [K14544] U3 small nucleolar RNA-associated protein 22; [KOG2054] Nucleolar RNA-associated protein (NRAP); [PTHR17972] NUCLEOLAR RNA-ASSOCIATED PROTEIN; [PF03813] Nrap protein
Mapoly0069s0034 [K14564] nucleolar protein 56; [PF01798] Putative snoRNA binding domain; [PTHR10894:SF0] NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58); [PF08060] NOSIC (NUC001) domain; [PF08156] NOP5NT (NUC127) domain; [KOG2573] Ribosome biogenesis protein - Nop56p/Sik1p; [PTHR10894] NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58)
Mapoly0099s0044 [PTHR13389] UNCHARACTERIZED
Mapoly0103s0023 [GO:0003723] RNA binding; [KOG1253] tRNA methyltransferase; [PTHR10631] N(2),N(2)-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE; [K00555] tRNA (guanine-N2-)-methyltransferase [EC:2.1.1.32]; [2.1.1.32] Transferred entry: 2.1.1.213, 2.1.1.214, 2.1.1.215 and 2.1.1.216.; [GO:0008033] tRNA processing; [PF02005] N2,N2-dimethylguanosine tRNA methyltransferase; [GO:0004809] tRNA (guanine-N2-)-methyltransferase activity
Mapoly0108s0039 [GO:0001522] pseudouridine synthesis; [GO:0042254] ribosome biogenesis; [PTHR31633] FAMILY NOT NAMED; [PF04410] Gar1/Naf1 RNA binding region
Mapoly0145s0019 [K03353] anaphase-promoting complex subunit 6; [PF13414] TPR repeat; [KOG1173] Anaphase-promoting complex (APC), Cdc16 subunit; [PF13424] Tetratricopeptide repeat; [PTHR12558:SF9] CELL DIVISION CYCLE 16; [PTHR12558] CELL DIVISION CYCLE 16,23,27; [PF12895] Anaphase-promoting complex, cyclosome, subunit 3
Mapoly0148s0006 [PF07890] Rrp15p; [PTHR13245] FAMILY NOT NAMED
Mapoly0153s0002 [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [6.1.1.4] Leucine--tRNA ligase.; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [K01869] leucyl-tRNA synthetase [EC:6.1.1.4]; [PF00133] tRNA synthetases class I (I, L, M and V); [KOG0437] Leucyl-tRNA synthetase; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity
Mapoly0169s0023 [PTHR16274] NUCLEOLAR PROTEIN 8; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)