Guide Gene

Gene ID
Mapoly0009s0141
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF05022] SRP40, C-terminal domain; [PTHR23216] NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0009s0141 [PF05022] SRP40, C-terminal domain; [PTHR23216] NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1 0.00 1.0000
1 Mapoly0057s0025 [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [K06173] tRNA pseudouridine synthase A [EC:5.4.99.12]; [GO:0001522] pseudouridine synthesis; [KOG2553] Pseudouridylate synthase; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity; [5.4.99.12] tRNA pseudouridine(38-40) synthase.3.160.8944
2 Mapoly0009s0077 [PTHR14927:SF0] SUBFAMILY NOT NAMED; [KOG2321] WD40 repeat protein; [PTHR14927] UNCHARACTERIZED; [GO:0005634] nucleus; [PF08159] NUC153 domain3.870.8990
3 Mapoly0099s0044 [PTHR13389] UNCHARACTERIZED5.480.8930
4 Mapoly0153s0002 [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [6.1.1.4] Leucine--tRNA ligase.; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [K01869] leucyl-tRNA synthetase [EC:6.1.1.4]; [PF00133] tRNA synthetases class I (I, L, M and V); [KOG0437] Leucyl-tRNA synthetase; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity6.240.8530
5 Mapoly0069s0034 [K14564] nucleolar protein 56; [PF01798] Putative snoRNA binding domain; [PTHR10894:SF0] NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58); [PF08060] NOSIC (NUC001) domain; [PF08156] NOP5NT (NUC127) domain; [KOG2573] Ribosome biogenesis protein - Nop56p/Sik1p; [PTHR10894] NUCLEOLAR PROTEIN 5 (NUCLEOLAR PROTEIN NOP5)(NOP58)6.710.8816
6 Mapoly0021s0013 [PTHR19853] WD REPEAT CONTAINING PROTEIN 3 (WDR3); [GO:0005515] protein binding; [PF04003] Dip2/Utp12 Family; [KOG0306] WD40-repeat-containing subunit of the 18S rRNA processing complex; [PTHR19853:SF0] SUBFAMILY NOT NAMED; [K14556] U3 small nucleolar RNA-associated protein 12; [PF00400] WD domain, G-beta repeat6.930.8813
7 Mapoly0060s0020 [K14544] U3 small nucleolar RNA-associated protein 22; [KOG2054] Nucleolar RNA-associated protein (NRAP); [PTHR17972] NUCLEOLAR RNA-ASSOCIATED PROTEIN; [PF03813] Nrap protein6.930.8869
8 Mapoly0001s0281 [PF03914] CBF/Mak21 family; [PTHR14428:SF5] SUBFAMILY NOT NAMED; [PF07540] Nucleolar complex-associated protein; [PTHR14428] NUCLEOLAR COMPLEX PROTEIN 3; [KOG2153] Protein involved in the nuclear export of pre-ribosomes8.370.8608
9 Mapoly0078s0006 [K14546] U3 small nucleolar RNA-associated protein 5; [GO:0005515] protein binding; [KOG4547] WD40 repeat-containing protein; [PTHR22847] WD40 REPEAT PROTEIN; [PF04003] Dip2/Utp12 Family; [PF00400] WD domain, G-beta repeat10.390.8554
10 Mapoly0155s0010 [KOG0319] WD40-repeat-containing subunit of the 18S rRNA processing complex; [PF08625] Utp13 specific WD40 associated domain; [PTHR19854:SF15] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [GO:0006364] rRNA processing; [K14555] U3 small nucleolar RNA-associated protein 13; [GO:0032040] small-subunit processome; [PTHR19854] TRANSDUCIN BETA-LIKE 3; [PF00400] WD domain, G-beta repeat11.220.8398
11 Mapoly0148s0006 [PF07890] Rrp15p; [PTHR13245] FAMILY NOT NAMED13.080.8635
12 Mapoly0041s0093 [PF09368] Sas10 C-terminal domain; [PF04000] Sas10/Utp3/C1D family; [PTHR13237] SOMETHING ABOUT SILENCING PROTEIN 10-RELATED; [KOG3118] Disrupter of silencing SAS1015.200.8758
13 Mapoly0034s0108 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [KOG1122] tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2); [PF01189] NOL1/NOP2/sun family15.490.8732
14 Mapoly0097s0041 [PTHR12661] PETER PAN-RELATED; [PTHR12661:SF5] SUBFAMILY NOT NAMED; [KOG2963] RNA-binding protein required for 60S ribosomal subunit biogenesis; [PF04427] Brix domain15.910.8561
15 Mapoly0022s0008 [PTHR22808] NCL1(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PF01189] NOL1/NOP2/sun family; [KOG2198] tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily; [PTHR22808:SF1] PUTATIVE METHYLTRANSFERASE NCL1(YEAST)-RELATED20.350.8280
16 Mapoly0008s0107 [K12852] 116 kDa U5 small nuclear ribonucleoprotein component; [PF00009] Elongation factor Tu GTP binding domain; [PF00679] Elongation factor G C-terminus; [GO:0003924] GTPase activity; [PTHR23115] TRANSLATION FACTOR; [PTHR23115:SF5] 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; [PF03764] Elongation factor G, domain IV; [KOG0468] U5 snRNP-specific protein; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 220.450.8384
17 Mapoly0069s0022 [PF04097] Nup93/Nic96; [GO:0005643] nuclear pore; [KOG2168] Cullins; [PTHR11225] NUCLEAR PORE COMPLEX PROTEIN NUP93 (NUCLEOPORIN NUP93) (DEAD EYE PROTEIN); [K14309] nuclear pore complex protein Nup93; [GO:0006810] transport20.490.8307
18 Mapoly0108s0041 [PTHR14978:SF0] SUBFAMILY NOT NAMED; [PTHR14978] BETA-CATENIN-LIKE PROTEIN 1 (NUCLEAR ASSOCIATED PROTEIN); [K12864] beta-catenin-like protein 1; [KOG2734] Uncharacterized conserved protein; [PF08216] Catenin-beta-like, Arm-motif containing nuclear20.780.7879
19 Mapoly0121s0015 [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)25.300.8357
20 Mapoly0160s0012 [PTHR10357] ALPHA-AMYLASE; [GO:0004553] hydrolase activity, hydrolyzing O-glycosyl compounds; [GO:0005975] carbohydrate metabolic process; [PF02806] Alpha amylase, C-terminal all-beta domain; [GO:0003824] catalytic activity; [KOG0470] 1,4-alpha-glucan branching enzyme/starch branching enzyme II; [GO:0043169] cation binding; [PF00128] Alpha amylase, catalytic domain; [PF02922] Carbohydrate-binding module 48 (Isoamylase N-terminal domain)27.000.8147
21 Mapoly0108s0017 [KOG2186] Cell growth-regulating nucleolar protein; [PF12874] Zinc-finger of C2H2 type; [PTHR13100] FAMILY NOT NAMED; [PF08790] LYAR-type C2HC zinc finger; [PTHR13100:SF10] SUBFAMILY NOT NAMED27.350.7892
22 Mapoly0031s0153 [2.3.1.-] Transferring groups other than amino-acyl groups.; [PTHR10925] N-ACETYLTRANSFERASE 10; [GO:0008080] N-acetyltransferase activity; [K14521] N-acetyltransferase 10 [EC:2.3.1.-]; [PF13725] Possible tRNA binding domain; [PF13718] GNAT acetyltransferase 2; [PF05127] Helicase; [PF08351] Domain of unknown function (DUF1726); [KOG2036] Predicted P-loop ATPase fused to an acetyltransferase27.710.8415
23 Mapoly0001s0398 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF02518] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [PF01751] Toprim domain; [PTHR10169] DNA TOPOISOMERASE/GYRASE; [PF00986] DNA gyrase B subunit, carboxyl terminus; [GO:0006265] DNA topological change; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [KOG0355] DNA topoisomerase type II; [5.99.1.3] DNA topoisomerase (ATP-hydrolyzing).; [K02470] DNA gyrase subunit B [EC:5.99.1.3]; [PF00204] DNA gyrase B30.000.8006
24 Mapoly0151s0007 [GO:0008168] methyltransferase activity; [PTHR10920:SF13] RRNA METHYLTRANSFERASE 3; [PF11861] Domain of unknown function (DUF3381); [GO:0031167] rRNA methylation; [PTHR10920] RIBOSOMAL RNA METHYLTRANSFERASE; [GO:0032259] methylation; [PF01728] FtsJ-like methyltransferase; [KOG1098] Putative SAM-dependent rRNA methyltransferase SPB1; [GO:0005634] nucleus; [GO:0006364] rRNA processing; [PF07780] Spb1 C-terminal domain; [GO:0001510] RNA methylation; [GO:0008649] rRNA methyltransferase activity30.170.8024
25 Mapoly0012s0170 [GO:0005515] protein binding; [PTHR19865] U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2; [PTHR19865:SF0] SUBFAMILY NOT NAMED; [KOG0299] U3 snoRNP-associated protein (contains WD40 repeats); [PF00400] WD domain, G-beta repeat30.400.8485
26 Mapoly0009s0044 [GO:0003676] nucleic acid binding; [PTHR24622] FAMILY NOT NAMED; [K14573] nucleolar protein 4; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [KOG0127] Nucleolar protein fibrillarin NOP77 (RRM superfamily)30.580.8408
27 Mapoly0025s0073 [PTHR17605] RIBOSOME BIOGENESIS PROTEIN BOP1 (BLOCK OF PROLIFERATION 1 PROTEIN); [GO:0005515] protein binding; [GO:0006364] rRNA processing; [KOG0650] WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis; [PF00400] WD domain, G-beta repeat; [PF08145] BOP1NT (NUC169) domain31.460.8307
28 Mapoly0004s0293 [GO:0005515] protein binding; [PTHR13889:SF2] WD-REPEAT PROTEIN 36 (T-CELL ACTIVATION WD REPEAT PROTEIN); [PTHR13889] PRE-MRNA SPLICING FACTOR PRP19-RELATED; [KOG1539] WD repeat protein; [GO:0006364] rRNA processing; [GO:0032040] small-subunit processome; [K14554] U3 small nucleolar RNA-associated protein 21; [PF04192] Utp21 specific WD40 associated putative domain; [PF00400] WD domain, G-beta repeat33.990.8420
29 Mapoly0039s0055 [GO:0016876] ligase activity, forming aminoacyl-tRNA and related compounds; [PF00749] tRNA synthetases class I (E and Q), catalytic domain; [GO:0005524] ATP binding; [GO:0004819] glutamine-tRNA ligase activity; [GO:0005737] cytoplasm; [GO:0006425] glutaminyl-tRNA aminoacylation; [K01886] glutaminyl-tRNA synthetase [EC:6.1.1.18]; [PF04558] Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1; [GO:0000166] nucleotide binding; [GO:0043039] tRNA aminoacylation; [PF03950] tRNA synthetases class I (E and Q), anti-codon binding domain; [PF04557] Glutaminyl-tRNA synthetase, non-specific RNA binding region part 2; [PTHR10119] GLUTAMYL/GLUTAMINYL-TRNA SYNTHETASE; [KOG1148] Glutaminyl-tRNA synthetase; [GO:0006418] tRNA aminoacylation for protein translation; [6.1.1.18] Glutamine--tRNA ligase.; [GO:0004812] aminoacyl-tRNA ligase activity34.860.7887
30 Mapoly0003s0137 [3.1.26.11] Ribonuclease Z.; [PTHR12553] RIBONUCLEASE Z; [K00784] ribonuclease Z [EC:3.1.26.11]; [PF13691] tRNase Z endonuclease; [KOG2121] Predicted metal-dependent hydrolase (beta-lactamase superfamily); [PF12706] Beta-lactamase superfamily domain; [GO:0008033] tRNA processing34.990.7649
31 Mapoly0050s0121 [KOG1416] tRNA(1-methyladenosine) methyltransferase, subunit GCD10; [GO:0003743] translation initiation factor activity; [PTHR12945] TRANSLATION INITIATION FACTOR EIF3-RELATED; [K03256] tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit; [GO:0006413] translational initiation; [PF04189] Gcd10p family36.770.8184
32 Mapoly0006s0083 [3.4.24.-] Metalloendopeptidases.; [GO:0005524] ATP binding; [GO:0004222] metalloendopeptidase activity; [K03798] cell division protease FtsH [EC:3.4.24.-]; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis37.350.8085
33 Mapoly0032s0003 [PF05178] KRI1-like family; [KOG2409] KRR1-interacting protein involved in 40S ribosome biogenesis; [PTHR14490] ZINC FINGER, ZZ TYPE; [PF12936] KRI1-like family C-terminal37.420.8136
34 Mapoly0027s0074 [PTHR23111] ZINC FINGER PROTEIN; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [KOG4198] RNA-binding Ran Zn-finger protein and related proteins38.260.8243
35 Mapoly0061s0134 [PTHR12687] NUCLEOLAR COMPLEX 2 AND RAD4-RELATED; [KOG2256] Predicted protein involved in nuclear export of pre-ribosomes; [PF03715] Noc2p family; [PTHR12687:SF4] YEAST NUCLEOLAR COMPLEX 238.730.8212
36 Mapoly0122s0042 [KOG2885] Uncharacterized conserved protein; [PTHR14369] SURFEIT LOCUS PROTEIN 6; [PF04935] Surfeit locus protein 6; [PF15459] 60S ribosome biogenesis protein Rrp14; [PTHR14369:SF0] SUBFAMILY NOT NAMED40.400.8084
37 Mapoly0040s0120 [PTHR12858] RIBOSOME BIOGENESIS PROTEIN; [KOG1951] GTP-binding protein AARP2 involved in 40S ribosome biogenesis; [GO:0042254] ribosome biogenesis; [PTHR12858:SF2] RIBOSOME BIOGENESIS PROTEIN BMS1; [GO:0005634] nucleus; [PF08142] AARP2CN (NUC121) domain; [K14569] ribosome biogenesis protein BMS1; [PF04950] Protein of unknown function (DUF663)41.820.8080
38 Mapoly0079s0015 [PTHR11778] SERYL-TRNA SYNTHETASE; [GO:0005524] ATP binding; [GO:0004828] serine-tRNA ligase activity; [K01875] seryl-tRNA synthetase [EC:6.1.1.11]; [GO:0005737] cytoplasm; [GO:0006434] seryl-tRNA aminoacylation; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [KOG2509] Seryl-tRNA synthetase; [PF02403] Seryl-tRNA synthetase N-terminal domain; [GO:0000166] nucleotide binding; [PTHR11778:SF0] SUBFAMILY NOT NAMED; [6.1.1.11] Serine--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity42.810.7971
39 Mapoly0060s0046 [GO:0006396] RNA processing; [PTHR11246] PRE-MRNA SPLICING FACTOR; [KOG1915] Cell cycle control protein (crooked neck); [GO:0005515] protein binding; [PF13181] Tetratricopeptide repeat; [K12869] crooked neck; [GO:0005622] intracellular; [PF02184] HAT (Half-A-TPR) repeat; [PTHR11246:SF3] CROOKED NECK PROTEIN44.500.7668
40 Mapoly0148s0008 [K01754] threonine dehydratase [EC:4.3.1.19]; [PF00585] C-terminal regulatory domain of Threonine dehydratase; [4.3.1.19] Threonine ammonia-lyase.; [PF00291] Pyridoxal-phosphate dependent enzyme; [KOG1250] Threonine/serine dehydratases; [PTHR10314:SF30] THREONINE DEHYDRATASE; [PTHR10314] SER/THR DEHYDRATASE, TRP SYNTHASE45.550.7538
41 Mapoly0002s0245 [K06961] ribosomal RNA assembly protein; [KOG2874] rRNA processing protein; [PTHR12581] HIV-1 REV BINDING PROTEIN 2, 346.150.8102
42 Mapoly0108s0039 [GO:0001522] pseudouridine synthesis; [GO:0042254] ribosome biogenesis; [PTHR31633] FAMILY NOT NAMED; [PF04410] Gar1/Naf1 RNA binding region48.960.7885
43 Mapoly0103s0023 [GO:0003723] RNA binding; [KOG1253] tRNA methyltransferase; [PTHR10631] N(2),N(2)-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE; [K00555] tRNA (guanine-N2-)-methyltransferase [EC:2.1.1.32]; [2.1.1.32] Transferred entry: 2.1.1.213, 2.1.1.214, 2.1.1.215 and 2.1.1.216.; [GO:0008033] tRNA processing; [PF02005] N2,N2-dimethylguanosine tRNA methyltransferase; [GO:0004809] tRNA (guanine-N2-)-methyltransferase activity50.600.7682
44 Mapoly0148s0012 [PF02136] Nuclear transport factor 2 (NTF2) domain; [PTHR10693] RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG0116] RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains; [GO:0006810] transport; [GO:0005622] intracellular51.370.6821
45 Mapoly0113s0055 [KOG2155] Tubulin-tyrosine ligase-related protein; [PTHR12241] TUBULIN TYROSINE LIGASE-RELATED; [PF03133] Tubulin-tyrosine ligase family; [GO:0006464] cellular protein modification process; [PTHR12241:SF13] SUBFAMILY NOT NAMED51.500.7842
46 Mapoly0141s0001 [PTHR12770] FAMILY NOT NAMED; [PF04884] Vitamin B6 photo-protection and homoeostasis; [KOG4249] Uncharacterized conserved protein; [PTHR12770:SF7] SUBFAMILY NOT NAMED52.210.7461
47 Mapoly0014s0207 [PTHR14212] U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED; [GO:0046540] U4/U6 x U5 tri-snRNP complex; [K12843] U4/U6 small nuclear ribonucleoprotein PRP3; [GO:0000398] mRNA splicing, via spliceosome; [KOG2769] Putative u4/u6 small nuclear ribonucleoprotein; [PF06544] Protein of unknown function (DUF1115); [PF08572] pre-mRNA processing factor 3 (PRP3)53.440.7940
48 Mapoly0013s0047 [KOG2147] Nucleolar protein involved in 40S ribosome biogenesis; [PTHR23183:SF0] SUBFAMILY NOT NAMED; [PTHR23183] NOP14; [PF03715] Noc2p family; [GO:0032040] small-subunit processome; [PF04147] Nop14-like family55.440.8113
49 Mapoly0008s0219 -55.750.7602
50 Mapoly0112s0008 [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [PTHR12399] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7; [KOG2479] Translation initiation factor 3, subunit d (eIF-3d); [K03251] translation initiation factor eIF-3 subunit 7; [PF05091] Eukaryotic translation initiation factor 3 subunit 7 (eIF-3); [GO:0005852] eukaryotic translation initiation factor 3 complex56.000.7858
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