Guide Gene

Gene ID
Mapoly0001s0398
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF02518] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [PF01751] Toprim domain; [PTHR10169] DNA TOPOISOMERASE/GYRASE; [PF00986] DNA gyrase B subunit, carboxyl terminus; [GO:0006265] DNA topological change; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [KOG0355] DNA topoisomerase type II; [5.99.1.3] DNA topoisomerase (ATP-hydrolyzing).; [K02470] DNA gyrase subunit B [EC:5.99.1.3]; [PF00204] DNA gyrase B

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0001s0398 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF02518] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [PF01751] Toprim domain; [PTHR10169] DNA TOPOISOMERASE/GYRASE; [PF00986] DNA gyrase B subunit, carboxyl terminus; [GO:0006265] DNA topological change; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [KOG0355] DNA topoisomerase type II; [5.99.1.3] DNA topoisomerase (ATP-hydrolyzing).; [K02470] DNA gyrase subunit B [EC:5.99.1.3]; [PF00204] DNA gyrase B 0.00 1.0000
1 Mapoly0041s0149 [GO:0009113] purine nucleobase biosynthetic process; [PF02844] Phosphoribosylglycinamide synthetase, N domain; [PTHR10520] TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED; [PF01071] Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; [GO:0004637] phosphoribosylamine-glycine ligase activity; [K01945] phosphoribosylamine--glycine ligase [EC:6.3.4.13]; [PF02843] Phosphoribosylglycinamide synthetase, C domain; [6.3.4.13] Phosphoribosylamine--glycine ligase.1.000.8900
2 Mapoly0010s0185 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10169] DNA TOPOISOMERASE/GYRASE; [K02469] DNA gyrase subunit A [EC:5.99.1.3]; [GO:0006265] DNA topological change; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [PF00521] DNA gyrase/topoisomerase IV, subunit A; [GO:0005694] chromosome; [KOG0355] DNA topoisomerase type II; [GO:0003916] DNA topoisomerase activity; [PF03989] DNA gyrase C-terminal domain, beta-propeller; [5.99.1.3] DNA topoisomerase (ATP-hydrolyzing).3.870.8593
3 Mapoly0006s0083 [3.4.24.-] Metalloendopeptidases.; [GO:0005524] ATP binding; [GO:0004222] metalloendopeptidase activity; [K03798] cell division protease FtsH [EC:3.4.24.-]; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis4.470.8611
4 Mapoly0157s0006 [PTHR26312] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF13432] Tetratricopeptide repeat; [PF00515] Tetratricopeptide repeat4.690.8119
5 Mapoly0160s0012 [PTHR10357] ALPHA-AMYLASE; [GO:0004553] hydrolase activity, hydrolyzing O-glycosyl compounds; [GO:0005975] carbohydrate metabolic process; [PF02806] Alpha amylase, C-terminal all-beta domain; [GO:0003824] catalytic activity; [KOG0470] 1,4-alpha-glucan branching enzyme/starch branching enzyme II; [GO:0043169] cation binding; [PF00128] Alpha amylase, catalytic domain; [PF02922] Carbohydrate-binding module 48 (Isoamylase N-terminal domain)5.290.8434
6 Mapoly0074s0049 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [KOG1249] Predicted GTPases; [GO:0005525] GTP binding10.950.8283
7 Mapoly0021s0013 [PTHR19853] WD REPEAT CONTAINING PROTEIN 3 (WDR3); [GO:0005515] protein binding; [PF04003] Dip2/Utp12 Family; [KOG0306] WD40-repeat-containing subunit of the 18S rRNA processing complex; [PTHR19853:SF0] SUBFAMILY NOT NAMED; [K14556] U3 small nucleolar RNA-associated protein 12; [PF00400] WD domain, G-beta repeat14.070.8271
8 Mapoly0014s0202 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [PTHR11089:SF3] GTP-BINDING PROTEIN-RELATED PLANT/BACTERIA; [K13427] nitric-oxide synthase, plant [EC:1.14.13.39]; [1.14.13.39] Nitric-oxide synthase (NADPH dependent).; [GO:0005525] GTP binding15.200.7512
9 Mapoly0054s0113 [GO:0006396] RNA processing; [2.1.1.-] Methyltransferases.; [PTHR11061] RNA M5U METHYLTRANSFERASE FAMILY; [K00599] trans-aconitate 2-methyltransferase [EC:2.1.1.144]; [GO:0008173] RNA methyltransferase activity; [PF05958] tRNA (Uracil-5-)-methyltransferase; [KOG2187] tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes16.730.8145
10 Mapoly0081s0059 [GO:0004222] metalloendopeptidase activity; [GO:0005524] ATP binding; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis18.650.8110
11 Mapoly0002s0142 -19.600.8085
12 Mapoly0020s0128 [PTHR12311] FAMILY NOT NAMED; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG3152] TBP-binding protein, activator of basal transcription (contains rrm motif)20.200.8051
13 Mapoly0148s0006 [PF07890] Rrp15p; [PTHR13245] FAMILY NOT NAMED22.650.8136
14 Mapoly0027s0074 [PTHR23111] ZINC FINGER PROTEIN; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [KOG4198] RNA-binding Ran Zn-finger protein and related proteins23.320.8141
15 Mapoly0046s0034 [4.1.1.21] Phosphoribosylaminoimidazole carboxylase.; [PTHR23047:SF1] PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE-SUBUNIT; [PTHR23047] PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE-SUBUNIT; [KOG2835] Phosphoribosylamidoimidazole-succinocarboxamide synthase; [K11808] phosphoribosylaminoimidazole carboxylase [EC:4.1.1.21]; [PF02222] ATP-grasp domain; [GO:0006189] 'de novo' IMP biosynthetic process; [PF00731] AIR carboxylase25.280.7550
16 Mapoly0091s0082 [PF08245] Mur ligase middle domain; [GO:0005524] ATP binding; [PTHR23135:SF4] UDP-N-ACETYLMURAMOYLALANYL-D-GLUTAMATE--2,6-DIAMINOPIMELATE LIGASE; [GO:0016874] ligase activity; [GO:0009058] biosynthetic process; [PF01225] Mur ligase family, catalytic domain; [PF02875] Mur ligase family, glutamate ligase domain; [KOG2525] Folylpolyglutamate synthase; [PTHR23135] MUR LIGASE FAMILY MEMBER29.330.8027
17 Mapoly0061s0053 -29.850.7925
18 Mapoly0009s0141 [PF05022] SRP40, C-terminal domain; [PTHR23216] NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 130.000.8006
19 Mapoly0057s0025 [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [K06173] tRNA pseudouridine synthase A [EC:5.4.99.12]; [GO:0001522] pseudouridine synthesis; [KOG2553] Pseudouridylate synthase; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity; [5.4.99.12] tRNA pseudouridine(38-40) synthase.30.500.8087
20 Mapoly0008s0219 -30.590.7850
21 Mapoly0143s0027 [PTHR22851] U3 SMALL NUCLEOLAR RNA (U3 SNORNA) ASSOCIATED PROTEIN; [PTHR22851:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [KOG0268] Sof1-like rRNA processing protein (contains WD40 repeats); [K11806] WD repeat and SOF domain-containing protein 1; [PF04158] Sof1-like domain; [PF00400] WD domain, G-beta repeat30.820.8032
22 Mapoly0065s0074 [GO:0016876] ligase activity, forming aminoacyl-tRNA and related compounds; [GO:0005524] ATP binding; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [GO:0000166] nucleotide binding; [GO:0043039] tRNA aminoacylation; [PF07973] Threonyl and Alanyl tRNA synthetase second additional domain; [K01868] threonyl-tRNA synthetase [EC:6.1.1.3]; [PTHR11451] TRNA SYNTHETASE-RELATED; [6.1.1.3] Threonine--tRNA ligase.; [PF03129] Anticodon binding domain; [KOG1637] Threonyl-tRNA synthetase; [GO:0006418] tRNA aminoacylation for protein translation; [PF02824] TGS domain; [GO:0004812] aminoacyl-tRNA ligase activity31.180.7982
23 Mapoly0071s0086 [KOG0623] Glutamine amidotransferase/cyclase; [PTHR21235:SF2] IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF (IGP SYNTHASE SUBUNIT HISF); [PTHR21235] IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H (IGP SYNTHASE SUBUNIT HISF/H); [GO:0000105] histidine biosynthetic process; [K01663] glutamine amidotransferase / cyclase [EC:2.4.2.- 4.1.3.-]; [PF00117] Glutamine amidotransferase class-I; [PF00977] Histidine biosynthesis protein; [4.1.3.-] Oxo-acid-lyases.; [2.4.2.-] Pentosyltransferases.31.750.8008
24 Mapoly0165s0012 [PF08640] U3 small nucleolar RNA-associated protein 6; [KOG2396] HAT (Half-A-TPR) repeat-containing protein; [K14557] U3 small nucleolar RNA-associated protein 6; [PTHR23271] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 6632.250.8105
25 Mapoly0004s0293 [GO:0005515] protein binding; [PTHR13889:SF2] WD-REPEAT PROTEIN 36 (T-CELL ACTIVATION WD REPEAT PROTEIN); [PTHR13889] PRE-MRNA SPLICING FACTOR PRP19-RELATED; [KOG1539] WD repeat protein; [GO:0006364] rRNA processing; [GO:0032040] small-subunit processome; [K14554] U3 small nucleolar RNA-associated protein 21; [PF04192] Utp21 specific WD40 associated putative domain; [PF00400] WD domain, G-beta repeat33.170.8132
26 Mapoly0120s0021 -35.790.8026
27 Mapoly0003s0096 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [GO:0005515] protein binding; [PF00856] SET domain; [PF09273] Rubisco LSMT substrate-binding35.940.7916
28 Mapoly0054s0003 [K01409] O-sialoglycoprotein endopeptidase [EC:3.4.24.57]; [KOG2708] Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold); [PF00814] Glycoprotease family; [PTHR11735] O-SIALOGLYCOPROTEIN ENDOPEPTIDASE; [3.4.24.57] O-sialoglycoprotein endopeptidase.; [PTHR11735:SF6] SUBFAMILY NOT NAMED36.500.7888
29 Mapoly0009s0077 [PTHR14927:SF0] SUBFAMILY NOT NAMED; [KOG2321] WD40 repeat protein; [PTHR14927] UNCHARACTERIZED; [GO:0005634] nucleus; [PF08159] NUC153 domain36.660.8105
30 Mapoly0121s0015 [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)38.110.8022
31 Mapoly0031s0040 [PF00206] Lyase; [4.3.2.2] Adenylosuccinate lyase.; [K01756] adenylosuccinate lyase [EC:4.3.2.2]; [KOG2700] Adenylosuccinate lyase; [PF08328] Adenylosuccinate lyase C-terminal; [GO:0004018] N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0006188] IMP biosynthetic process39.500.7624
32 Mapoly0022s0147 [KOG1191] Mitochondrial GTPase; [PF01926] 50S ribosome-binding GTPase; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [PF14714] KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; [GO:0005525] GTP binding41.570.7696
33 Mapoly0015s0052 [KOG2467] Glycine/serine hydroxymethyltransferase; [GO:0006544] glycine metabolic process; [2.1.2.1] Glycine hydroxymethyltransferase.; [GO:0006563] L-serine metabolic process; [K00600] glycine hydroxymethyltransferase [EC:2.1.2.1]; [PF00464] Serine hydroxymethyltransferase; [GO:0004372] glycine hydroxymethyltransferase activity; [PTHR11680] SERINE HYDROXYMETHYLTRANSFERASE43.420.7605
34 Mapoly0029s0145 [GO:0003677] DNA binding; [PF00046] Homeobox domain44.450.7267
35 Mapoly0004s0145 [PTHR24012] FAMILY NOT NAMED; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)45.500.8015
36 Mapoly0034s0108 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [KOG1122] tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2); [PF01189] NOL1/NOP2/sun family45.690.8035
37 Mapoly0153s0002 [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [6.1.1.4] Leucine--tRNA ligase.; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [K01869] leucyl-tRNA synthetase [EC:6.1.1.4]; [PF00133] tRNA synthetases class I (I, L, M and V); [KOG0437] Leucyl-tRNA synthetase; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity46.280.7810
38 Mapoly0002s0326 [GO:0003922] GMP synthase (glutamine-hydrolyzing) activity; [GO:0005524] ATP binding; [PF00958] GMP synthase C terminal domain; [6.3.5.2] GMP synthase (glutamine-hydrolyzing).; [KOG1622] GMP synthase; [PTHR11922] GMP SYNTHASE-RELATED; [GO:0006177] GMP biosynthetic process; [K01951] GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]; [PF00117] Glutamine amidotransferase class-I; [GO:0006164] purine nucleotide biosynthetic process46.320.7952
39 Mapoly0022s0008 [PTHR22808] NCL1(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PF01189] NOL1/NOP2/sun family; [KOG2198] tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily; [PTHR22808:SF1] PUTATIVE METHYLTRANSFERASE NCL1(YEAST)-RELATED46.960.7791
40 Mapoly0003s0044 [PTHR10745:SF0] GLYCYL-TRNA SYNTHETASE; [GO:0005524] ATP binding; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [GO:0000166] nucleotide binding; [PTHR10745] GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2; [6.1.1.14] Glycine--tRNA ligase.; [KOG2298] Glycyl-tRNA synthetase and related class II tRNA synthetase; [K01880] glycyl-tRNA synthetase [EC:6.1.1.14]; [PF03129] Anticodon binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity47.700.7909
41 Mapoly0097s0041 [PTHR12661] PETER PAN-RELATED; [PTHR12661:SF5] SUBFAMILY NOT NAMED; [KOG2963] RNA-binding protein required for 60S ribosomal subunit biogenesis; [PF04427] Brix domain52.540.7930
42 Mapoly0032s0021 [KOG2555] AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase; [PF01808] AICARFT/IMPCHase bienzyme; [PTHR11692] BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN; [GO:0003937] IMP cyclohydrolase activity; [PF02142] MGS-like domain; [GO:0004643] phosphoribosylaminoimidazolecarboxamide formyltransferase activity; [3.5.4.10] IMP cyclohydrolase.; [GO:0006164] purine nucleotide biosynthetic process; [2.1.2.3] Phosphoribosylaminoimidazolecarboxamide formyltransferase.; [K00602] phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]53.580.7429
43 Mapoly0045s0029 [PF13374] Tetratricopeptide repeat; [KOG1840] Kinesin light chain; [PF13424] Tetratricopeptide repeat; [PTHR19959] KINESIN LIGHT CHAIN54.550.7743
44 Mapoly0051s0110 [KOG2855] Ribokinase; [PF00294] pfkB family carbohydrate kinase; [PTHR10584] SUGAR KINASE54.800.6599
45 Mapoly0041s0093 [PF09368] Sas10 C-terminal domain; [PF04000] Sas10/Utp3/C1D family; [PTHR13237] SOMETHING ABOUT SILENCING PROTEIN 10-RELATED; [KOG3118] Disrupter of silencing SAS1056.320.7983
46 Mapoly0031s0153 [2.3.1.-] Transferring groups other than amino-acyl groups.; [PTHR10925] N-ACETYLTRANSFERASE 10; [GO:0008080] N-acetyltransferase activity; [K14521] N-acetyltransferase 10 [EC:2.3.1.-]; [PF13725] Possible tRNA binding domain; [PF13718] GNAT acetyltransferase 2; [PF05127] Helicase; [PF08351] Domain of unknown function (DUF1726); [KOG2036] Predicted P-loop ATPase fused to an acetyltransferase57.720.7980
47 Mapoly0003s0273 [PF02769] AIR synthase related protein, C-terminal domain; [PTHR10520] TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED; [6.3.3.1] Phosphoribosylformylglycinamidine cyclo-ligase.; [K01933] phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]; [PF00586] AIR synthase related protein, N-terminal domain; [GO:0003824] catalytic activity; [PTHR10520:SF22] PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE58.240.7608
48 Mapoly0114s0038 [PF13812] Pentatricopeptide repeat domain; [PTHR13547] UNCHARACTERIZED; [PTHR13547:SF2] gb def: hypothetical protein [arabidopsis thaliana]; [PF11977] Zc3h12a-like Ribonuclease NYN domain58.240.7696
49 Mapoly0102s0045 [PF00571] CBS domain; [K00088] IMP dehydrogenase [EC:1.1.1.205]; [GO:0055114] oxidation-reduction process; [PTHR11911:SF6] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE; [PTHR11911] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED; [PF00478] IMP dehydrogenase / GMP reductase domain; [1.1.1.205] IMP dehydrogenase.; [GO:0003824] catalytic activity; [GO:0030554] adenyl nucleotide binding; [GO:0006164] purine nucleotide biosynthetic process; [KOG2550] IMP dehydrogenase/GMP reductase; [GO:0003938] IMP dehydrogenase activity59.480.7622
50 Mapoly0032s0003 [PF05178] KRI1-like family; [KOG2409] KRR1-interacting protein involved in 40S ribosome biogenesis; [PTHR14490] ZINC FINGER, ZZ TYPE; [PF12936] KRI1-like family C-terminal60.660.7845
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