Guide Gene

Gene ID
Mapoly0046s0034
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[4.1.1.21] Phosphoribosylaminoimidazole carboxylase.; [PTHR23047:SF1] PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE-SUBUNIT; [PTHR23047] PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE-SUBUNIT; [KOG2835] Phosphoribosylamidoimidazole-succinocarboxamide synthase; [K11808] phosphoribosylaminoimidazole carboxylase [EC:4.1.1.21]; [PF02222] ATP-grasp domain; [GO:0006189] 'de novo' IMP biosynthetic process; [PF00731] AIR carboxylase

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0046s0034 [4.1.1.21] Phosphoribosylaminoimidazole carboxylase.; [PTHR23047:SF1] PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE-SUBUNIT; [PTHR23047] PHOSPHORIBOSYLAMINOIMIDAZOLE CARBOXYLASE ATPASE-SUBUNIT; [KOG2835] Phosphoribosylamidoimidazole-succinocarboxamide synthase; [K11808] phosphoribosylaminoimidazole carboxylase [EC:4.1.1.21]; [PF02222] ATP-grasp domain; [GO:0006189] 'de novo' IMP biosynthetic process; [PF00731] AIR carboxylase 0.00 1.0000
1 Mapoly0020s0128 [PTHR12311] FAMILY NOT NAMED; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG3152] TBP-binding protein, activator of basal transcription (contains rrm motif)3.000.8348
2 Mapoly0015s0052 [KOG2467] Glycine/serine hydroxymethyltransferase; [GO:0006544] glycine metabolic process; [2.1.2.1] Glycine hydroxymethyltransferase.; [GO:0006563] L-serine metabolic process; [K00600] glycine hydroxymethyltransferase [EC:2.1.2.1]; [PF00464] Serine hydroxymethyltransferase; [GO:0004372] glycine hydroxymethyltransferase activity; [PTHR11680] SERINE HYDROXYMETHYLTRANSFERASE6.930.7915
3 Mapoly0003s0096 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [GO:0005515] protein binding; [PF00856] SET domain; [PF09273] Rubisco LSMT substrate-binding8.120.7996
4 Mapoly0102s0045 [PF00571] CBS domain; [K00088] IMP dehydrogenase [EC:1.1.1.205]; [GO:0055114] oxidation-reduction process; [PTHR11911:SF6] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE; [PTHR11911] INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED; [PF00478] IMP dehydrogenase / GMP reductase domain; [1.1.1.205] IMP dehydrogenase.; [GO:0003824] catalytic activity; [GO:0030554] adenyl nucleotide binding; [GO:0006164] purine nucleotide biosynthetic process; [KOG2550] IMP dehydrogenase/GMP reductase; [GO:0003938] IMP dehydrogenase activity8.660.7941
5 Mapoly0031s0040 [PF00206] Lyase; [4.3.2.2] Adenylosuccinate lyase.; [K01756] adenylosuccinate lyase [EC:4.3.2.2]; [KOG2700] Adenylosuccinate lyase; [PF08328] Adenylosuccinate lyase C-terminal; [GO:0004018] N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0006188] IMP biosynthetic process10.100.7775
6 Mapoly0135s0050 [GO:0016597] amino acid binding; [PF02729] Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; [K00609] aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]; [GO:0016743] carboxyl- or carbamoyltransferase activity; [GO:0006520] cellular amino acid metabolic process; [PTHR11405] CARBAMOYLTRANSFERASE RELATED; [KOG1504] Ornithine carbamoyltransferase OTC/ARG3; [PF00185] Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; [2.1.3.2] Aspartate carbamoyltransferase.14.870.7226
7 Mapoly0046s0035 -16.430.7055
8 Mapoly0041s0149 [GO:0009113] purine nucleobase biosynthetic process; [PF02844] Phosphoribosylglycinamide synthetase, N domain; [PTHR10520] TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED; [PF01071] Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; [GO:0004637] phosphoribosylamine-glycine ligase activity; [K01945] phosphoribosylamine--glycine ligase [EC:6.3.4.13]; [PF02843] Phosphoribosylglycinamide synthetase, C domain; [6.3.4.13] Phosphoribosylamine--glycine ligase.17.890.7870
9 Mapoly0088s0019 [PTHR21392:SF2] gb def: Hypothetical protein At2g41750 (At2g41750/T11A7.15); [PTHR21392] UNCHARACTERIZED; [PF03942] DTW domain20.200.7352
10 Mapoly0020s0093 [PF12589] Methyltransferase involved in Williams-Beuren syndrome; [PTHR12734:SF0] SUBFAMILY NOT NAMED; [GO:0008168] methyltransferase activity; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process; [KOG1541] Predicted protein carboxyl methylase; [PTHR12734] METHYLTRANSFERASE-RELATED22.910.7679
11 Mapoly0001s0398 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF02518] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [PF01751] Toprim domain; [PTHR10169] DNA TOPOISOMERASE/GYRASE; [PF00986] DNA gyrase B subunit, carboxyl terminus; [GO:0006265] DNA topological change; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [KOG0355] DNA topoisomerase type II; [5.99.1.3] DNA topoisomerase (ATP-hydrolyzing).; [K02470] DNA gyrase subunit B [EC:5.99.1.3]; [PF00204] DNA gyrase B25.280.7550
12 Mapoly0029s0145 [GO:0003677] DNA binding; [PF00046] Homeobox domain25.460.7144
13 Mapoly0114s0040 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family27.220.7183
14 Mapoly0027s0149 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031:SF2] SUBFAMILY NOT NAMED; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF13959] Domain of unknown function (DUF4217); [KOG0345] ATP-dependent RNA helicase28.160.7302
15 Mapoly0005s0156 [GO:0005737] cytoplasm; [PF04055] Radical SAM superfamily; [PTHR30544] 23S RRNA METHYLTRANSFERASE; [GO:0008173] RNA methyltransferase activity; [GO:0003824] catalytic activity; [GO:0006364] rRNA processing; [GO:0051536] iron-sulfur cluster binding29.700.7215
16 Mapoly0022s0124 -30.400.7166
17 Mapoly0027s0074 [PTHR23111] ZINC FINGER PROTEIN; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others; [KOG4198] RNA-binding Ran Zn-finger protein and related proteins32.980.7615
18 Mapoly0003s0243 [GO:0016020] membrane; [PF01554] MatE; [GO:0015238] drug transmembrane transporter activity; [GO:0015297] antiporter activity; [GO:0055085] transmembrane transport; [PTHR11206] MULTIDRUG RESISTANCE PROTEIN; [KOG1347] Uncharacterized membrane protein, predicted efflux pump; [GO:0006855] drug transmembrane transport34.410.6260
19 Mapoly0144s0025 [GO:0005524] ATP binding; [K04077] chaperonin GroEL; [GO:0044267] cellular protein metabolic process; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [KOG0356] Mitochondrial chaperonin, Cpn60/Hsp60p35.100.7406
20 Mapoly0061s0140 [KOG2972] Uncharacterized conserved protein; [PTHR12532:SF0] SUBFAMILY NOT NAMED; [PTHR12532] UNCHARACTERIZED; [PF01709] Transcriptional regulator35.690.7295
21 Mapoly0011s0087 -38.260.6712
22 Mapoly0122s0018 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [KOG2423] Nucleolar GTPase; [PF01926] 50S ribosome-binding GTPase; [GO:0005730] nucleolus; [PF08153] NGP1NT (NUC091) domain; [K14537] nuclear GTP-binding protein; [GO:0005525] GTP binding; [PTHR11089:SF9] GTP-BINDING PROTEIN 239.500.7484
23 Mapoly0029s0132 [K02355] elongation factor EF-G [EC:3.6.5.3]; [PF14492] Elongation Factor G, domain II; [3.6.5.3] Protein-synthesizing GTPase.; [PF00009] Elongation factor Tu GTP binding domain; [KOG0465] Mitochondrial elongation factor; [PF00679] Elongation factor G C-terminus; [GO:0003924] GTPase activity; [PTHR23115:SF66] SUBFAMILY NOT NAMED; [PTHR23115] TRANSLATION FACTOR; [PF03764] Elongation factor G, domain IV; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 244.990.6856
24 Mapoly0008s0066 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0761] Mitochondrial carrier protein CGI-69; [PTHR24089:SF25] SUBFAMILY NOT NAMED47.810.5856
25 Mapoly0173s0025 [PF12452] Protein of unknown function (DUF3685)48.790.6962
26 Mapoly0078s0010 [PTHR11246] PRE-MRNA SPLICING FACTOR; [PF13429] Tetratricopeptide repeat52.020.6696
27 Mapoly0047s0031 [K01952] phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]; [PTHR10099] PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE; [PF02769] AIR synthase related protein, C-terminal domain; [PF13507] CobB/CobQ-like glutamine amidotransferase domain; [PF00586] AIR synthase related protein, N-terminal domain; [KOG1907] Phosphoribosylformylglycinamidine synthase; [GO:0003824] catalytic activity; [PTHR10099:SF1] TEGUMENT PROTEIN; [6.3.5.3] Phosphoribosylformylglycinamidine synthase.56.120.7283
28 Mapoly0122s0011 [GO:0005524] ATP binding; [KOG0327] Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031:SF114] MITOCHONDRIAL DEAD BOX PROTEIN, PUTATIVE; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding56.230.6969
29 Mapoly0003s0001 [K04567] lysyl-tRNA synthetase, class II [EC:6.1.1.6]; [GO:0005524] ATP binding; [6.1.1.6] Lysine--tRNA ligase.; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [KOG1885] Lysyl-tRNA synthetase (class II); [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)56.750.7149
30 Mapoly0037s0138 [KOG2061] Uncharacterized MYND Zn-finger protein; [PF04194] Programmed cell death protein 2, C-terminal putative domain; [GO:0005737] cytoplasm; [PTHR12298] PCDC2 (PROGRAMMED CELL DEATH PROTEIN 2)-RELATED; [PF01753] MYND finger57.860.6712
31 Mapoly0026s0053 [PF00190] Cupin; [GO:0045735] nutrient reservoir activity; [PTHR31238] FAMILY NOT NAMED62.210.6569
32 Mapoly0115s0026 [KOG4134] DNA-dependent RNA polymerase I; [PTHR12709] DNA-DIRECTED RNA POLYMERASE II, III62.610.7266
33 Mapoly0006s0155 [GO:0003723] RNA binding; [PTHR11078] N UTILIZATION SUBSTANCE PROTEIN B-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF01029] NusB family; [GO:0006353] DNA-dependent transcription, termination63.580.6818
34 Mapoly0008s0248 [KOG0265] U5 snRNP-specific protein-like factor and related proteins; [GO:0005515] protein binding; [PTHR22850] WD40 REPEAT FAMILY; [PF00400] WD domain, G-beta repeat63.870.6159
35 Mapoly0054s0113 [GO:0006396] RNA processing; [2.1.1.-] Methyltransferases.; [PTHR11061] RNA M5U METHYLTRANSFERASE FAMILY; [K00599] trans-aconitate 2-methyltransferase [EC:2.1.1.144]; [GO:0008173] RNA methyltransferase activity; [PF05958] tRNA (Uracil-5-)-methyltransferase; [KOG2187] tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes65.500.7055
36 Mapoly0048s0058 [PTHR12821] BYSTIN; [KOG3871] Cell adhesion complex protein bystin; [PTHR12821:SF0] SUBFAMILY NOT NAMED; [PF05291] Bystin67.260.7037
37 Mapoly0056s0004 -68.080.6835
38 Mapoly0032s0021 [KOG2555] AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase; [PF01808] AICARFT/IMPCHase bienzyme; [PTHR11692] BIFUNCTIONAL PURINE BIOSYNTHESIS PROTEIN; [GO:0003937] IMP cyclohydrolase activity; [PF02142] MGS-like domain; [GO:0004643] phosphoribosylaminoimidazolecarboxamide formyltransferase activity; [3.5.4.10] IMP cyclohydrolase.; [GO:0006164] purine nucleotide biosynthetic process; [2.1.2.3] Phosphoribosylaminoimidazolecarboxamide formyltransferase.; [K00602] phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase [EC:2.1.2.3 3.5.4.10]69.630.6811
39 Mapoly0002s0338 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding69.710.7174
40 Mapoly0036s0028 [PF04939] Ribosome biogenesis regulatory protein (RRS1); [KOG1765] Regulator of ribosome synthesis; [GO:0042254] ribosome biogenesis; [GO:0005634] nucleus; [PTHR17602] RIBOSOME BIOGENESIS REGULATORY PROTEIN69.990.7011
41 Mapoly0004s0145 [PTHR24012] FAMILY NOT NAMED; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)73.570.7165
42 Mapoly0003s0273 [PF02769] AIR synthase related protein, C-terminal domain; [PTHR10520] TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED; [6.3.3.1] Phosphoribosylformylglycinamidine cyclo-ligase.; [K01933] phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]; [PF00586] AIR synthase related protein, N-terminal domain; [GO:0003824] catalytic activity; [PTHR10520:SF22] PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE76.410.6867
43 Mapoly0114s0038 [PF13812] Pentatricopeptide repeat domain; [PTHR13547] UNCHARACTERIZED; [PTHR13547:SF2] gb def: hypothetical protein [arabidopsis thaliana]; [PF11977] Zc3h12a-like Ribonuclease NYN domain76.640.6983
44 Mapoly0066s0056 [PTHR23115:SF38] EUKARYOTIC RELEASE FACTOR 3-RELATED (ERFS) (HBS1-LIKE); [PF03143] Elongation factor Tu C-terminal domain; [PF00009] Elongation factor Tu GTP binding domain; [KOG0458] Elongation factor 1 alpha; [GO:0003924] GTPase activity; [PTHR23115] TRANSLATION FACTOR; [GO:0005525] GTP binding; [K14416] elongation factor 1 alpha-like protein78.420.6607
45 Mapoly0071s0086 [KOG0623] Glutamine amidotransferase/cyclase; [PTHR21235:SF2] IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF (IGP SYNTHASE SUBUNIT HISF); [PTHR21235] IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H (IGP SYNTHASE SUBUNIT HISF/H); [GO:0000105] histidine biosynthetic process; [K01663] glutamine amidotransferase / cyclase [EC:2.4.2.- 4.1.3.-]; [PF00117] Glutamine amidotransferase class-I; [PF00977] Histidine biosynthesis protein; [4.1.3.-] Oxo-acid-lyases.; [2.4.2.-] Pentosyltransferases.79.600.7007
46 Mapoly0034s0108 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [KOG1122] tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2); [PF01189] NOL1/NOP2/sun family80.000.7075
47 Mapoly0066s0007 [PF00291] Pyridoxal-phosphate dependent enzyme; [KOG1252] Cystathionine beta-synthase and related enzymes; [PTHR10314] SER/THR DEHYDRATASE, TRP SYNTHASE81.310.6638
48 Mapoly0043s0066 [PF01963] TraB family; [PTHR21530:SF1] gb def: Hypothetical protein At2g32340; [KOG2860] Uncharacterized conserved protein, contains TraB domain; [PTHR21530] PHEROMONE SHUTDOWN PROTEIN81.610.6476
49 Mapoly0081s0053 [PF04452] RNA methyltransferase; [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [PTHR30027] RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E; [K09761] ribosomal RNA small subunit methyltransferase E [EC:2.1.1.-]; [GO:0006364] rRNA processing84.140.6726
50 Mapoly0061s0053 -85.700.6782
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