Guide Gene

Gene ID
Mapoly0022s0028
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [PF00249] Myb-like DNA-binding domain; [PF00538] linker histone H1 and H5 family; [GO:0003682] chromatin binding; [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN; [GO:0000786] nucleosome; [GO:0005634] nucleus; [GO:0006334] nucleosome assembly

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0022s0028 [GO:0003677] DNA binding; [PF00249] Myb-like DNA-binding domain; [PF00538] linker histone H1 and H5 family; [GO:0003682] chromatin binding; [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN; [GO:0000786] nucleosome; [GO:0005634] nucleus; [GO:0006334] nucleosome assembly 0.00 1.0000
1 Mapoly0036s0027 [PF03134] TB2/DP1, HVA22 family; [PTHR12300:SF20] HVA22-LIKE PROTEIN; [KOG1726] HVA22/DP1 gene product-related proteins; [PTHR12300] HVA22-LIKE PROTEINS2.000.7197
2 Mapoly0094s0058 [PTHR12999] FAMILY NOT NAMED; [GO:0008270] zinc ion binding; [PF00641] Zn-finger in Ran binding protein and others3.740.7581
3 Mapoly0003s0208 [PF10381] Autophagocytosis associated protein C-terminal; [K08343] autophagy-related protein 3; [PTHR12866] AUTOPHAGOCYTOSIS PROTEIN AUT1-RELATED; [PF03986] Autophagocytosis associated protein (Atg3), N-terminal domain; [PF03987] Autophagocytosis associated protein, active-site domain; [KOG2981] Protein involved in autophagocytosis during starvation12.120.6553
4 Mapoly0069s0030 [PF03735] ENT domain; [KOG4675] Uncharacterized conserved protein, contains ENT domain13.230.6804
5 Mapoly0011s0131 [GO:0005524] ATP binding; [PF01928] CYTH domain; [PF00485] Phosphoribulokinase / Uridine kinase family; [GO:0008152] metabolic process; [GO:0016301] kinase activity; [PTHR10285] URIDINE KINASE15.970.6917
6 Mapoly0070s0037 [PTHR10044] INHIBITOR OF APOPTOSIS; [PF00097] Zinc finger, C3HC4 type (RING finger); [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [K10586] baculoviral IAP repeat-containing protein 6 (apollon) [EC:6.3.2.19]; [KOG0417] Ubiquitin-protein ligase; [GO:0046872] metal ion binding; [PF00179] Ubiquitin-conjugating enzyme16.310.6198
7 Mapoly0036s0089 -17.230.6789
8 Mapoly0111s0035 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12547] CCCH ZINC FINGER/TIS11-RELATED; [GO:0046872] metal ion binding; [KOG1677] CCCH-type Zn-finger protein22.360.6886
9 Mapoly0014s0141 [PTHR10615:SF81] SUBFAMILY NOT NAMED; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10615] HISTONE ACETYLTRANSFERASE31.620.6795
10 Mapoly0001s0015 [PTHR13555] C2H2 ZINC FINGER CGI-62-RELATED31.940.6725
11 Mapoly0009s0028 [PTHR22812] CHROMOBOX PROTEIN; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain32.090.6868
12 Mapoly0006s0033 [PF02373] JmjC domain, hydroxylase; [PTHR12549] JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; [PF08879] WRC36.410.6702
13 Mapoly0001s0473 -37.790.6829
14 Mapoly0011s0057 [PF13837] Myb/SANT-like DNA-binding domain43.930.6777
15 Mapoly0145s0026 [KOG1163] Casein kinase (serine/threonine/tyrosine protein kinase); [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED; [K02218] casein kinase 1 [EC:2.7.11.1]45.430.6488
16 Mapoly0002s0236 [PTHR10782:SF4] SUBFAMILY NOT NAMED; [PTHR10782] ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; [GO:0008270] zinc ion binding; [GO:0019789] SUMO ligase activity; [PF02891] MIZ/SP-RING zinc finger48.630.6734
17 Mapoly0093s0070 -49.070.4808
18 Mapoly0117s0011 [PTHR11024] PROTEIN TRANSPORT PROTEIN SEC13-RELATED; [GO:0005515] protein binding; [KOG2445] Nuclear pore complex component (sc Seh1); [PF00400] WD domain, G-beta repeat54.220.6224
19 Mapoly0068s0092 [GO:0003723] RNA binding; [PF00013] KH domain56.000.6673
20 Mapoly0052s0111 [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG4206] Spliceosomal protein snRNP-U1A/U2B; [PTHR13976] HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED56.260.6680
21 Mapoly0016s0015 [PTHR12277] UNCHARACTERIZED; [KOG1552] Predicted alpha/beta hydrolase; [PF12695] Alpha/beta hydrolase family58.380.5372
22 Mapoly0013s0062 [GO:0003677] DNA binding; [PTHR15348:SF0] SUBFAMILY NOT NAMED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005622] intracellular; [PTHR15348] AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN (ARID DOMAIN- CONTAINING PROTEIN) (DEAD RINGER PROTEIN) (B-CELL REGULATOR OF IGH TRANSCRIPTION) (BRIGHT)59.280.6690
23 Mapoly0014s0204 [PTHR24012] FAMILY NOT NAMED; [PTHR24012:SF31] SUBFAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [KOG0148] Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)59.450.6595
24 Mapoly0050s0017 [PTHR31587] FAMILY NOT NAMED; [PF10225] Uncharacterized conserved protein (DUF2215)60.450.5989
25 Mapoly0105s0015 [GO:0003677] DNA binding; [KOG2393] Transcription initiation factor IIF, large subunit (RAP74); [GO:0032968] positive regulation of transcription elongation from RNA polymerase II promoter; [K03138] transcription initiation factor TFIIF subunit alpha; [PF05793] Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); [PTHR13011] TFIIF-ALPHA; [GO:0005634] nucleus; [GO:0006367] transcription initiation from RNA polymerase II promoter63.720.6562
26 Mapoly0169s0015 [GO:0006355] regulation of transcription, DNA-dependent; [KOG3149] Transcription initiation factor IIF, auxiliary subunit; [PTHR23195] YEATS DOMAIN; [PF03366] YEATS family; [GO:0005634] nucleus; [K11341] YEATS domain-containing protein 464.310.6537
27 Mapoly0159s0020 [K05544] tRNA-dihydrouridine synthase 3 [EC:1.-.-.-]; [GO:0050660] flavin adenine dinucleotide binding; [GO:0055114] oxidation-reduction process; [PTHR11082:SF8] TRNA-DIHYDROURIDINE SYNTHASE 3; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PF01207] Dihydrouridine synthase (Dus); [KOG2333] Uncharacterized conserved protein; [GO:0008033] tRNA processing; [PTHR11082] TRNA-DIHYDROURIDINE SYNTHASE; [GO:0046872] metal ion binding; [GO:0017150] tRNA dihydrouridine synthase activity; [1.-.-.-] Oxidoreductases.65.580.6514
28 Mapoly0065s0086 [PTHR22069:SF0] SUBFAMILY NOT NAMED; [PTHR22069] MITOCHONDRIAL RIBOSOMAL PROTEIN S1867.260.6348
29 Mapoly0099s0053 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [GO:0046872] metal ion binding68.370.6631
30 Mapoly0020s0146 -70.360.6264
31 Mapoly0181s0006 [PF13414] TPR repeat; [PTHR14699:SF0] SUBFAMILY NOT NAMED; [PTHR14699] STI2 PROTEIN-RELATED75.480.6393
32 Mapoly0006s0120 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PF00139] Legume lectin domain; [GO:0030246] carbohydrate binding; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE76.470.6226
33 Mapoly0029s0042 [GO:0006355] regulation of transcription, DNA-dependent; [PF00382] Transcription factor TFIIB repeat; [GO:0006352] DNA-dependent transcription, initiation; [K03124] transcription initiation factor TFIIB; [PTHR11618] TRANSCRIPTION INITIATION FACTOR IIB-RELATED; [GO:0008270] zinc ion binding; [PTHR11618:SF13] TRANSCRIPTION INITIATION FACTOR IIB; [KOG1597] Transcription initiation factor TFIIB; [GO:0017025] TBP-class protein binding76.700.5563
34 Mapoly0039s0014 [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN76.940.6182
35 Mapoly0105s0033 [PF07524] Bromodomain associated79.970.6442
36 Mapoly0004s0286 [PTHR12663:SF0] SUBFAMILY NOT NAMED; [K11267] sister chromatid cohesion protein PDS5; [PTHR12663] ANDROGEN INDUCED INHIBITOR OF PROLIFERATION (AS3) / PDS5-RELATED; [KOG1525] Sister chromatid cohesion complex Cohesin, subunit PDS580.390.6624
37 Mapoly0001s0198 [GO:0005524] ATP binding; [2.7.12.1] Dual-specificity kinase.; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [K08825] dual-specificity tyrosine-(Y)-phosphorylation regulated kinase [EC:2.7.12.1]; [PTHR24058] DUAL SPECIFICITY PROTEIN KINASE; [KOG0667] Dual-specificity tyrosine-phosphorylation regulated kinase; [GO:0006468] protein phosphorylation; [PTHR24058:SF22] DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE 284.290.6062
38 Mapoly0002s0093 [PTHR24012] FAMILY NOT NAMED; [KOG4205] RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1; [K12741] heterogeneous nuclear ribonucleoprotein A1/A3; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)84.940.6209
39 Mapoly0005s0105 [PF13414] TPR repeat; [PTHR23083] TETRATRICOPEPTIDE REPEAT PROTEIN, TPR85.850.6192
40 Mapoly0035s0147 [PTHR12085] PHOSPHATASE SUBUNIT GENE G4-1; [PTHR12085:SF3] PHOSPHATASE SUBUNIT GENE G4-1; [KOG2562] Protein phosphatase 2 regulatory subunit; [K11583] protein phosphatase 2 (formerly 2A), regulatory subunit B''; [PF13499] EF-hand domain pair; [GO:0005509] calcium ion binding86.300.6007
41 Mapoly0015s0162 [GO:0016020] membrane; [KOG1286] Amino acid transporters; [GO:0003333] amino acid transmembrane transport; [PF13906] C-terminus of AA_permease; [PF13520] Amino acid permease; [PTHR11785] AMINO ACID TRANSPORTER; [GO:0015171] amino acid transmembrane transporter activity86.500.5742
42 Mapoly0026s0020 [KOG2253] U1 snRNP complex, subunit SNU71 and related PWI-motif proteins87.610.6472
43 Mapoly0127s0029 [PTHR11668] SERINE/THREONINE PROTEIN PHOSPHATASE; [PF00149] Calcineurin-like phosphoesterase; [GO:0016787] hydrolase activity; [KOG0374] Serine/threonine specific protein phosphatase PP1, catalytic subunit; [3.1.3.16] Phosphoprotein phosphatase.; [K06269] protein phosphatase 1, catalytic subunit [EC:3.1.3.16]88.430.6072
44 Mapoly0009s0036 [KOG4259] Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain; [GO:0003676] nucleic acid binding; [PTHR21594] NUCLEAR PROTEIN HCC-1/THO1; [PF02037] SAP domain92.090.6230
45 Mapoly0043s0021 [KOG0919] C-5 cytosine-specific DNA methylase; [GO:0008168] methyltransferase activity; [PF11926] Domain of unknown function (DUF3444); [PTHR23068:SF2] gb def: Hypothetical protein F8M21_260; [PTHR23068] DNA (CYTOSINE-5-)-METHYLTRANSFERASE 3-RELATED; [PF00145] C-5 cytosine-specific DNA methylase93.690.6155
46 Mapoly0135s0035 [GO:0003676] nucleic acid binding; [PF02037] SAP domain94.660.6352
47 Mapoly0020s0030 [PF15346] Arginine and glutamate-rich 1; [PTHR31711] FAMILY NOT NAMED95.390.5924
48 Mapoly0144s0001 [PF08312] cwf21 domain; [PTHR23140:SF0] SUBFAMILY NOT NAMED; [PTHR23140] RNA PROCESSING PROTEIN LD23810P97.320.5829
49 Mapoly0067s0004 [KOG0005] Ubiquitin-like protein; [PTHR15204:SF1] SCYTHE/BAT3; [GO:0005515] protein binding; [PF00240] Ubiquitin family; [PTHR15204] SCYTHE/BAT3104.160.5888
50 Mapoly0004s0128 [GO:0005524] ATP binding; [K08864] tousled-like kinase [EC:2.7.11.1]; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0006468] protein phosphorylation; [PTHR22974] MIXED LINEAGE PROTEIN KINASE; [KOG1151] Tousled-like protein kinase108.250.6244
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