Guide Gene

Gene ID
Mapoly0013s0098
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[K05982] deoxyribonuclease V [EC:3.1.21.7]; [KOG4417] Predicted endonuclease; [3.1.21.7] Deoxyribonuclease V.; [PF04493] Endonuclease V; [GO:0006281] DNA repair; [GO:0004519] endonuclease activity

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0013s0098 [K05982] deoxyribonuclease V [EC:3.1.21.7]; [KOG4417] Predicted endonuclease; [3.1.21.7] Deoxyribonuclease V.; [PF04493] Endonuclease V; [GO:0006281] DNA repair; [GO:0004519] endonuclease activity 0.00 1.0000
1 Mapoly0066s0028 [PTHR32133] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF00646] F-box domain7.420.7934
2 Mapoly0032s0155 [KOG1390] Acetyl-CoA acetyltransferase; [PTHR18919] ACETYL-COA C-ACYLTRANSFERASE; [GO:0016747] transferase activity, transferring acyl groups other than amino-acyl groups; [PF00108] Thiolase, N-terminal domain; [GO:0008152] metabolic process; [PF02803] Thiolase, C-terminal domain8.490.7973
3 Mapoly0058s0055 [PF06244] Protein of unknown function (DUF1014); [PTHR21680:SF0] SUBFAMILY NOT NAMED; [KOG3223] Uncharacterized conserved protein; [PTHR21680] UNCHARACTERIZED8.940.7961
4 Mapoly0016s0169 -10.250.7974
5 Mapoly0189s0009 [PTHR31996] FAMILY NOT NAMED15.360.6877
6 Mapoly0044s0101 [KOG1296] Uncharacterized conserved protein; [PF05907] Eukaryotic protein of unknown function (DUF866); [PTHR12857] UNCHARACTERIZED; [PTHR12857:SF0] SUBFAMILY NOT NAMED15.720.7579
7 Mapoly0045s0149 [PTHR22960:SF0] SUBFAMILY NOT NAMED; [KOG2876] Molybdenum cofactor biosynthesis pathway protein; [PF13353] 4Fe-4S single cluster domain; [GO:0006777] Mo-molybdopterin cofactor biosynthetic process; [PF04055] Radical SAM superfamily; [GO:0051539] 4 iron, 4 sulfur cluster binding; [PTHR22960] MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding; [GO:0019008] molybdopterin synthase complex; [PF06463] Molybdenum Cofactor Synthesis C; [K03639] molybdenum cofactor biosynthesis protein16.730.7797
8 Mapoly0001s0178 [PF00782] Dual specificity phosphatase, catalytic domain; [K05766] slingshot; [GO:0006470] protein dephosphorylation; [PTHR10159] DUAL SPECIFICITY PROTEIN PHOSPHATASE; [GO:0008138] protein tyrosine/serine/threonine phosphatase activity18.810.7912
9 Mapoly0097s0077 [PTHR12888:SF0] SUBFAMILY NOT NAMED; [K13345] peroxin-12; [GO:0008270] zinc ion binding; [GO:0006625] protein targeting to peroxisome; [PF04757] Pex2 / Pex12 amino terminal region; [PF13923] Zinc finger, C3HC4 type (RING finger); [PTHR12888] PEROXISOME ASSEMBLY PROTEIN 12 (PEROXIN-12); [GO:0005779] integral to peroxisomal membrane; [GO:0008022] protein C-terminus binding; [KOG0826] Predicted E3 ubiquitin ligase involved in peroxisome organization18.970.7962
10 Mapoly0072s0043 -19.290.7148
11 Mapoly0151s0012 [PF12937] F-box-like; [GO:0005515] protein binding; [PTHR12874] FAMILY NOT NAMED; [K10295] F-box protein 9; [KOG2997] F-box protein FBX9; [PTHR12874:SF9] SUBFAMILY NOT NAMED19.900.7361
12 Mapoly0059s0058 [PF01541] GIY-YIG catalytic domain; [PTHR20208] FAMILY NOT NAMED20.710.7304
13 Mapoly0031s0113 [PTHR20854] INOSITOL MONOPHOSPHATASE; [GO:0046854] phosphatidylinositol phosphorylation; [3.1.3.7] 3'(2'),5'-bisphosphate nucleotidase.; [KOG1528] Salt-sensitive 3'-phosphoadenosine-5'-phosphatase HAL2/SAL1; [PF00459] Inositol monophosphatase family; [K01082] 3'(2'), 5'-bisphosphate nucleotidase [EC:3.1.3.7]21.490.7719
14 Mapoly0079s0003 [GO:0005506] iron ion binding; [GO:0055114] oxidation-reduction process; [PTHR11863:SF3] SUR2 HYDROXYLASE/DESATURASE; [GO:0006633] fatty acid biosynthetic process; [GO:0016491] oxidoreductase activity; [PF04116] Fatty acid hydroxylase superfamily; [PTHR11863] STEROL DESATURASE; [KOG0874] Sphingolipid hydroxylase22.520.7669
15 Mapoly0015s0170 [GO:0005515] protein binding; [PF07648] Kazal-type serine protease inhibitor domain22.800.7239
16 Mapoly0036s0053 [KOG3355] Mitochondrial sulfhydryl oxidase involved in the biogenesis of cytosolic Fe/S proteins; [GO:0016972] thiol oxidase activity; [GO:0055114] oxidation-reduction process; [PTHR12645] ALR/ERV; [PF04777] Erv1 / Alr family25.300.7595
17 Mapoly0186s0009 -25.500.7126
18 Mapoly0061s0105 [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN25.510.7849
19 Mapoly0148s0024 [PTHR12499:SF0] SUBFAMILY NOT NAMED; [PTHR12499] OPTIC ATROPHY 3 PROTEIN (OPA3); [PF07047] Optic atrophy 3 protein (OPA3); [KOG3335] Predicted coiled-coil protein28.460.7742
20 Mapoly0005s0033 [PTHR12695] GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2; [GO:0006289] nucleotide-excision repair; [PTHR12695:SF2] GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2; [PF07975] TFIIH C1-like domain; [GO:0008270] zinc ion binding; [GO:0006281] DNA repair; [GO:0006351] transcription, DNA-dependent; [GO:0000439] core TFIIH complex; [KOG2807] RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1; [PF04056] Ssl1-like; [K03142] transcription initiation factor TFIIH subunit 233.260.7604
21 Mapoly0023s0042 [GO:0016020] membrane; [PTHR14969:SF3] SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE (PAP2 FAMILY PROTEIN); [PTHR14969] SPHINGOSINE-1-PHOSPHATE PHOSPHOHYDROLASE; [PF01569] PAP2 superfamily; [KOG2822] Sphingoid base-phosphate phosphatase; [GO:0003824] catalytic activity34.990.7784
22 Mapoly0015s0071 [KOG2337] Ubiquitin activating E1 enzyme-like protein; [GO:0005737] cytoplasm; [K08337] autophagy-related protein 7; [GO:0006914] autophagy; [PF00899] ThiF family; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [PTHR10953:SF3] AUTOPHAGY-RELATED PROTEIN 7 (APG7-LIKE)(UBIQUITIN-ACTIVATING ENZYME E1-LIKE PROTEIN)35.240.7223
23 Mapoly0118s0043 -37.230.7549
24 Mapoly0012s0148 -38.420.7580
25 Mapoly0517s0001 [GO:0055114] oxidation-reduction process; [GO:0008270] zinc ion binding; [PF08240] Alcohol dehydrogenase GroES-like domain; [GO:0016491] oxidoreductase activity; [KOG0023] Alcohol dehydrogenase, class V; [PF00107] Zinc-binding dehydrogenase; [PTHR11695] ALCOHOL DEHYDROGENASE RELATED; [PTHR11695:SF261] ALCOHOL DEHYDROGENASE (ZN CONTAINING) (ADH-6)39.340.7035
26 Mapoly0043s0125 [PF13855] Leucine rich repeat; [PF13516] Leucine Rich repeat; [GO:0005515] protein binding; [PF00240] Ubiquitin family; [PTHR23155] LEUCINE-RICH REPEAT-CONTAINING PROTEIN39.690.7597
27 Mapoly0057s0044 [PF13902] R3H-associated N-terminal domain39.990.6849
28 Mapoly0003s0017 [K00819] ornithine--oxo-acid transaminase [EC:2.6.1.13]; [PTHR11986] AMINOTRANSFERASE CLASS III; [KOG1402] Ornithine aminotransferase; [GO:0030170] pyridoxal phosphate binding; [2.6.1.13] Ornithine aminotransferase.; [PTHR11986:SF18] ORNITHINE AMINOTRANSFERASE; [GO:0008483] transaminase activity; [PF00202] Aminotransferase class-III40.000.7393
29 Mapoly0074s0013 [GO:0018344] protein geranylgeranylation; [K05956] geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60]; [KOG0366] Protein geranylgeranyltransferase type II, beta subunit; [PF13249] Prenyltransferase-like; [PTHR11774] GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT; [GO:0003824] catalytic activity; [PF00432] Prenyltransferase and squalene oxidase repeat; [2.5.1.60] Protein geranylgeranyltransferase type II.; [GO:0004663] Rab geranylgeranyltransferase activity40.210.7568
30 Mapoly0036s0134 [K07976] Rab family, other; [GO:0007264] small GTPase mediated signal transduction; [PTHR24073] FAMILY NOT NAMED; [KOG0092] GTPase Rab5/YPT51 and related small G protein superfamily GTPases; [PF00071] Ras family; [GO:0005525] GTP binding42.080.7064
31 Mapoly0034s0109 [GO:0006396] RNA processing; [KOG3833] Uncharacterized conserved protein, contains RtcB domain; [PTHR11118] UNCHARACTERIZED; [PF01139] tRNA-splicing ligase RtcB; [GO:0008452] RNA ligase activity43.430.7544
32 Mapoly0019s0039 [K01409] O-sialoglycoprotein endopeptidase [EC:3.4.24.57]; [PF00814] Glycoprotease family; [KOG2707] Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold); [PTHR11735] O-SIALOGLYCOPROTEIN ENDOPEPTIDASE; [3.4.24.57] O-sialoglycoprotein endopeptidase.46.130.7317
33 Mapoly0001s0443 [GO:0007264] small GTPase mediated signal transduction; [K07890] Ras-related protein Rab-21; [PTHR24073] FAMILY NOT NAMED; [KOG0088] GTPase Rab21, small G protein superfamily; [PF00071] Ras family; [GO:0005525] GTP binding; [PTHR24073:SF8] SUBFAMILY NOT NAMED50.910.7470
34 Mapoly0008s0157 [PF13516] Leucine Rich repeat; [GO:0005515] protein binding; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN; [K03875] F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2); [PF00646] F-box domain51.090.7273
35 Mapoly0068s0059 [GO:0016020] membrane; [PTHR22911] ACYL-MALONYL CONDENSING ENZYME-RELATED; [PF00892] EamA-like transporter family53.670.7156
36 Mapoly0001s0080 [PF00415] Regulator of chromosome condensation (RCC1) repeat; [PTHR22870] REGULATOR OF CHROMOSOME CONDENSATION; [PF13540] Regulator of chromosome condensation (RCC1) repeat; [PTHR22870:SF26] UVB-RESISTANCE PROTEIN UVR8-RELATED; [KOG1427] Uncharacterized conserved protein, contains RCC1 domain53.980.7408
37 Mapoly0144s0014 [K01613] phosphatidylserine decarboxylase [EC:4.1.1.65]; [PTHR10067] PHOSPHATIDYLSERINE DECARBOXYLASE; [GO:0008654] phospholipid biosynthetic process; [4.1.1.65] Phosphatidylserine decarboxylase.; [GO:0004609] phosphatidylserine decarboxylase activity; [PF02666] Phosphatidylserine decarboxylase; [KOG2420] Phosphatidylserine decarboxylase55.430.7696
38 Mapoly0004s0042 [PF01471] Putative peptidoglycan binding domain; [PTHR15852] FAMILY NOT NAMED56.120.7331
39 Mapoly0042s0034 [PTHR23131:SF0] SUBFAMILY NOT NAMED; [KOG0813] Glyoxylase; [PF00753] Metallo-beta-lactamase superfamily; [PTHR23131] METALLO-BETA-LACTAMASE RELATED56.120.7504
40 Mapoly0023s0020 [2.5.1.-] Transferring alkyl or aryl groups, other than methyl groups.; [PF01255] Putative undecaprenyl diphosphate synthase; [GO:0016765] transferase activity, transferring alkyl or aryl (other than methyl) groups; [PTHR10291] DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE; [K11778] cis-prenyltransferase, dehydrodolichyl diphosphate synthase [EC:2.5.1.-]; [PTHR10291:SF0] DEHYDRODOLICHYL DIPHOSPHATE SYNTHASE57.450.7575
41 Mapoly0014s0147 [PTHR10072] IRON-SULFUR CLUSTER ASSEMBLY PROTEIN57.500.7464
42 Mapoly0011s0200 [PF00472] RF-1 domain; [GO:0005737] cytoplasm; [K02836] peptide chain release factor RF-2; [PTHR11075] PEPTIDE CHAIN RELEASE FACTOR; [PTHR11075:SF6] PEPTIDE CHAIN RELEASE FACTOR 2; [PF03462] PCRF domain; [GO:0006415] translational termination; [KOG2726] Mitochondrial polypeptide chain release factor; [GO:0016149] translation release factor activity, codon specific; [GO:0003747] translation release factor activity60.740.7594
43 Mapoly0027s0077 -66.090.7287
44 Mapoly0149s0026 [PTHR10211:SF0] DEOXYRIBODIPYRIMIDINE PHOTOLYASE; [K01669] deoxyribodipyrimidine photo-lyase [EC:4.1.99.3]; [GO:0003913] DNA photolyase activity; [KOG0133] Deoxyribodipyrimidine photolyase/cryptochrome; [PF00875] DNA photolyase; [GO:0003904] deoxyribodipyrimidine photo-lyase activity; [PF03441] FAD binding domain of DNA photolyase; [GO:0006281] DNA repair; [PTHR10211] DEOXYRIBODIPYRIMIDINE PHOTOLYASE; [4.1.99.3] Deoxyribodipyrimidine photo-lyase.67.420.6257
45 Mapoly0126s0021 [PF04046] PSP; [K13128] zinc finger CCHC domain-containing protein 8; [PTHR13316] ZINC FINGER, CCHC DOMAIN CONTAINING 868.410.7490
46 Mapoly0022s0095 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0043565] sequence-specific DNA binding; [GO:0003700] sequence-specific DNA binding transcription factor activity; [PTHR22952] CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED; [PF00170] bZIP transcription factor69.240.6950
47 Mapoly0038s0011 [PF06803] Protein of unknown function (DUF1232); [PTHR22894] UNCHARACTERIZED69.240.7247
48 Mapoly0089s0045 [KOG3350] Uncharacterized conserved protein; [PF10237] Probable N6-adenine methyltransferase69.560.7160
49 Mapoly0025s0100 [PTHR13124] 39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED; [KOG4548] Mitochondrial ribosomal protein L17; [PF11788] 39S mitochondrial ribosomal protein L4670.480.7517
50 Mapoly1495s0001 [GO:0032324] molybdopterin cofactor biosynthetic process; [GO:0006777] Mo-molybdopterin cofactor biosynthetic process; [PF03454] MoeA C-terminal region (domain IV); [PF00994] Probable molybdopterin binding domain; [PTHR10192] MOLYBDOPTERIN BIOSYNTHESIS PROTEIN; [PF03453] MoeA N-terminal region (domain I and II); [KOG2371] Molybdopterin biosynthesis protein; [K03750] molybdopterin biosynthesis protein MoeA72.070.7259
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