Guide Gene

Gene ID
Mapoly0012s0104
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0031625] ubiquitin protein ligase binding; [GO:0031461] cullin-RING ubiquitin ligase complex; [KOG2166] Cullins; [GO:0006511] ubiquitin-dependent protein catabolic process; [PF10557] Cullin protein neddylation domain; [PTHR11932] CULLIN; [PF00888] Cullin family

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0012s0104 [GO:0031625] ubiquitin protein ligase binding; [GO:0031461] cullin-RING ubiquitin ligase complex; [KOG2166] Cullins; [GO:0006511] ubiquitin-dependent protein catabolic process; [PF10557] Cullin protein neddylation domain; [PTHR11932] CULLIN; [PF00888] Cullin family 0.00 1.0000
1 Mapoly0011s0201 [GO:0031625] ubiquitin protein ligase binding; [GO:0031461] cullin-RING ubiquitin ligase complex; [KOG2166] Cullins; [GO:0006511] ubiquitin-dependent protein catabolic process; [PF10557] Cullin protein neddylation domain; [K03869] cullin 3; [PTHR11932] CULLIN; [PF00888] Cullin family4.580.7422
2 Mapoly0072s0011 [PF01602] Adaptin N terminal region; [PTHR22780] ADAPTIN, ALPHA/GAMMA/EPSILON; [GO:0016192] vesicle-mediated transport; [KOG1077] Vesicle coat complex AP-2, alpha subunit; [PF02883] Adaptin C-terminal domain; [PF02296] Alpha adaptin AP2, C-terminal domain; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [PTHR22780:SF4] ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 1 SUBUNIT (ALPHA-ADAPTIN A); [K11824] AP-2 complex subunit alpha4.900.7557
3 Mapoly0004s0114 [PF03097] BRO1-like domain; [K12200] programmed cell death 6-interacting protein; [PTHR23030] PCD6 INTERACTING PROTEIN-RELATED; [KOG2220] Predicted signal transduction protein; [GO:0005515] protein binding; [PF13949] ALIX V-shaped domain binding to HIV; [PTHR23030:SF13] SUBFAMILY NOT NAMED6.000.7452
4 Mapoly0125s0045 [PF05664] Protein of unknown function (DUF810); [PTHR31280] FAMILY NOT NAMED8.060.7279
5 Mapoly0009s0142 [GO:0005524] ATP binding; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [K12614] ATP-dependent RNA helicase DDX6/DHH1 [EC:3.6.4.13]; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [KOG0326] ATP-dependent RNA helicase11.620.6874
6 Mapoly0098s0037 [PTHR13043] EXOCYST COMPLEX COMPONENT SEC5; [GO:0000145] exocyst; [GO:0006893] Golgi to plasma membrane transport; [PF15469] Exocyst complex component Sec5; [KOG2347] Sec5 subunit of exocyst complex12.000.7282
7 Mapoly0002s0178 [K11826] AP-2 complex subunit mu-1; [GO:0016192] vesicle-mediated transport; [GO:0005515] protein binding; [PTHR11998] CLATHRIN COAT ASSEMBLY PROTEIN; [PF00928] Adaptor complexes medium subunit family; [KOG0938] Adaptor complexes medium subunit family; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport14.460.6962
8 Mapoly0146s0008 [GO:0008641] small protein activating enzyme activity; [GO:0005524] ATP binding; [PF09358] Ubiquitin-activating enzyme e1 C-terminal domain; [PF00899] ThiF family; [PF02134] Repeat in ubiquitin-activating (UBA) protein; [6.3.2.19] Ubiquitin--protein ligase.; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [KOG2012] Ubiquitin activating enzyme UBA1; [PF10585] Ubiquitin-activating enzyme active site; [GO:0006464] cellular protein modification process; [K03178] ubiquitin-activating enzyme E1 [EC:6.3.2.19]; [PTHR10953:SF4] UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 1 (UBIQUITIN-ACTIVATING ENZYME E1)17.290.6902
9 Mapoly0019s0073 [GO:0008565] protein transporter activity; [PTHR23316:SF0] SUBFAMILY NOT NAMED; [PF01749] Importin beta binding domain; [PF00514] Armadillo/beta-catenin-like repeat; [GO:0005737] cytoplasm; [GO:0005515] protein binding; [KOG0166] Karyopherin (importin) alpha; [GO:0005634] nucleus; [PTHR23316] IMPORTIN ALPHA; [GO:0006606] protein import into nucleus17.660.6946
10 Mapoly0043s0132 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00176] SNF2 family N-terminal domain; [PF06465] Domain of Unknown Function (DUF1087); [KOG0383] Predicted helicase17.750.7203
11 Mapoly0038s0024 [PTHR19878] AUTOPHAGY PROTEIN 16-LIKE21.630.7242
12 Mapoly0074s0001 [PF03810] Importin-beta N-terminal domain; [PF08767] CRM1 C terminal; [KOG2020] Nuclear transport receptor CRM1/MSN5 (importin beta superfamily); [PTHR11223] EXPORTIN 1/5; [GO:0006886] intracellular protein transport; [PTHR11223:SF2] EXPORTIN 1 (CHROMOSOME REGION MAINTENANCE PROTEIN 1); [K14290] exportin-1; [GO:0008536] Ran GTPase binding; [PF08389] Exportin 1-like protein26.150.6827
13 Mapoly0091s0053 [KOG0963] Transcription factor/CCAAT displacement protein CDP1; [PTHR14043] CCAAT DISPLACEMENT PROTEIN-RELATED; [K09313] homeobox protein cut-like; [GO:0006891] intra-Golgi vesicle-mediated transport; [GO:0030173] integral to Golgi membrane; [PF08172] CASP C terminal27.550.6693
14 Mapoly0001s0359 [KOG2286] Exocyst complex subunit SEC6; [GO:0000145] exocyst; [PF06046] Exocyst complex component Sec6; [PTHR21292] EXOCYST COMPLEX COMPONENT SEC6-RELATED; [PTHR21292:SF1] EXOCYST COMPLEX COMPONENT SEC6; [GO:0006887] exocytosis31.750.6176
15 Mapoly0016s0186 [PF00676] Dehydrogenase E1 component; [GO:0055114] oxidation-reduction process; [GO:0006099] tricarboxylic acid cycle; [1.2.4.2] Oxoglutarate dehydrogenase (succinyl-transferring).; [GO:0030976] thiamine pyrophosphate binding; [GO:0008152] metabolic process; [PF02779] Transketolase, pyrimidine binding domain; [K00164] 2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]; [GO:0004591] oxoglutarate dehydrogenase (succinyl-transferring) activity; [PTHR23152] 2-OXOGLUTARATE DEHYDROGENASE; [GO:0016624] oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor; [KOG0450] 2-oxoglutarate dehydrogenase, E1 subunit38.160.6526
16 Mapoly0143s0007 [PF08314] Secretory pathway protein Sec39; [PTHR15922:SF2] SUBFAMILY NOT NAMED; [PTHR15922] FAMILY NOT NAMED41.500.6876
17 Mapoly0034s0113 [3.6.3.8] Calcium-transporting ATPase.; [GO:0000166] nucleotide binding; [GO:0005516] calmodulin binding; [PF00702] haloacid dehalogenase-like hydrolase; [KOG0204] Calcium transporting ATPase; [PTHR24093] FAMILY NOT NAMED; [PF00690] Cation transporter/ATPase, N-terminus; [K01537] Ca2+-transporting ATPase [EC:3.6.3.8]; [PF00689] Cation transporting ATPase, C-terminus; [GO:0046872] metal ion binding; [PF00122] E1-E2 ATPase; [PF12515] Ca2+-ATPase N terminal autoinhibitory domain42.040.6173
18 Mapoly0112s0026 [PF11987] Translation-initiation factor 2; [KOG1144] Translation initiation factor 5B (eIF-5B); [PF00009] Elongation factor Tu GTP binding domain; [GO:0003924] GTPase activity; [PF14578] Elongation factor Tu domain 4; [PTHR23115] TRANSLATION FACTOR; [K03243] translation initiation factor eIF-5B; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 243.360.7194
19 Mapoly0013s0180 [PF12329] TATA element modulatory factor 1 DNA binding; [PTHR13140] MYOSIN; [KOG4673] Transcription factor TMF, TATA element modulatory factor; [PF12325] TATA element modulatory factor 1 TATA binding43.630.6839
20 Mapoly0009s0042 [KOG1985] Vesicle coat complex COPII, subunit SEC24/subunit SFB2; [PF04815] Sec23/Sec24 helical domain; [GO:0008270] zinc ion binding; [PTHR13803:SF4] gb def: SED5-binding protein 3 (SEC24-related protein 3) (Lethal with SEC13 protein 1); [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [K14007] protein transport protein SEC24; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR13803] SEC24-RELATED PROTEIN; [GO:0006888] ER to Golgi vesicle-mediated transport46.100.6832
21 Mapoly0013s0076 [PTHR23029] PHOSPHOGLYCERATE MUTASE; [KOG0235] Phosphoglycerate mutase; [PF00300] Histidine phosphatase superfamily (branch 1)47.750.5492
22 Mapoly0012s0024 -49.360.6795
23 Mapoly0051s0028 [GO:0003723] RNA binding; [PTHR23253] EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA; [PF02854] MIF4G domain; [GO:0005515] protein binding; [PF02020] eIF4-gamma/eIF5/eIF2-epsilon; [KOG2992] Nucleolar GTPase/ATPase p130; [K03260] translation initiation factor eIF-4F; [PF02847] MA3 domain49.480.7072
24 Mapoly0004s0129 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [PF12436] ICP0-binding domain of Ubiquitin-specific protease 7; [PF00917] MATH domain; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0005515] protein binding; [KOG1863] Ubiquitin carboxyl-terminal hydrolase; [PF14533] Ubiquitin-specific protease C-terminal; [PTHR24619] FAMILY NOT NAMED; [K11838] ubiquitin carboxyl-terminal hydrolase 7 [EC:3.1.2.15]50.890.7030
25 Mapoly0012s0190 [GO:0003723] RNA binding; [GO:0005524] ATP binding; [GO:0003774] motor activity; [PTHR13140] MYOSIN; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PF01843] DIL domain; [GO:0005515] protein binding; [KOG0160] Myosin class V heavy chain; [PF00612] IQ calmodulin-binding motif; [PF02736] Myosin N-terminal SH3-like domain; [PF00013] KH domain; [GO:0046872] metal ion binding; [PF00063] Myosin head (motor domain); [GO:0016459] myosin complex52.990.6649
26 Mapoly0156s0024 [PF08506] Cse1; [PF03810] Importin-beta N-terminal domain; [GO:0005515] protein binding; [KOG1992] Nuclear export receptor CSE1/CAS (importin beta superfamily); [PTHR10997:SF8] IMPORTIN-ALPHA RE-EXPORTER (CHROMOSOME SEGREGATION 1-LIKE PROTEIN); [PF03378] CAS/CSE protein, C-terminus; [GO:0006886] intracellular protein transport; [PTHR10997] IMPORTIN-7, 8, 11; [GO:0008536] Ran GTPase binding56.910.6358
27 Mapoly0125s0035 [PTHR23081] RNA POLYMERASE II CTD PHOSPHATASE; [PF00035] Double-stranded RNA binding motif; [PF03031] NLI interacting factor-like phosphatase; [GO:0005515] protein binding; [PTHR23081:SF1] RNA POLYMERASE II CTD PHOSPHATASE57.620.6801
28 Mapoly0104s0033 [GO:0005524] ATP binding; [3.6.4.6] Vesicle-fusing ATPase.; [PF02359] Cell division protein 48 (CDC48), N-terminal domain; [PF02933] Cell division protein 48 (CDC48), domain 2; [K06027] vesicle-fusing ATPase [EC:3.6.4.6]; [PF00004] ATPase family associated with various cellular activities (AAA); [KOG0741] AAA+-type ATPase; [PTHR23078] VESICULAR-FUSION PROTEIN NSF; [PTHR23078:SF3] VESICULAR-FUSION PROTEIN NSF57.630.5981
29 Mapoly0054s0061 [KOG3228] Uncharacterized conserved protein59.330.6362
30 Mapoly0001s0542 [KOG0266] WD40 repeat-containing protein; [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat60.250.6727
31 Mapoly0089s0039 [PF04571] lipin, N-terminal conserved region; [PTHR12181] LIPIN; [PF08235] LNS2 (Lipin/Ned1/Smp2); [PTHR12181:SF12] SUBFAMILY NOT NAMED; [KOG2116] Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism62.570.6486
32 Mapoly0056s0137 [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PTHR13743:SF16] SUBFAMILY NOT NAMED; [KOG1787] Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins; [PF02138] Beige/BEACH domain; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat63.320.6819
33 Mapoly0030s0155 [GO:0005086] ARF guanyl-nucleotide exchange factor activity; [PF09324] Domain of unknown function (DUF1981); [PF12783] Guanine nucleotide exchange factor in Golgi transport N-terminal; [KOG0929] Guanine nucleotide exchange factor; [PTHR10663] GUANYL-NUCLEOTIDE EXCHANGE FACTOR; [PF01369] Sec7 domain; [GO:0032012] regulation of ARF protein signal transduction63.640.6610
34 Mapoly0224s0002 -64.400.6444
35 Mapoly0123s0014 [GO:0008270] zinc ion binding; [PF02207] Putative zinc finger in N-recognin (UBR box); [KOG1139] Predicted ubiquitin-protein ligase of the N-recognin family; [PTHR21497] UBIQUITIN LIGASE E3 ALPHA-RELATED; [GO:0004842] ubiquitin-protein ligase activity64.900.6386
36 Mapoly0022s0045 [PTHR10121:SF0] COATOMER SUBUNIT DELTA; [GO:0016192] vesicle-mediated transport; [GO:0005515] protein binding; [GO:0030126] COPI vesicle coat; [PF00928] Adaptor complexes medium subunit family; [KOG2635] Medium subunit of clathrin adaptor complex; [GO:0006890] retrograde vesicle-mediated transport, Golgi to ER; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [PTHR10121] COATOMER SUBUNIT DELTA67.510.6246
37 Mapoly0123s0038 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [K11844] ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.1.2.15]; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [KOG1873] Ubiquitin-specific protease; [PTHR24006] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein71.200.6544
38 Mapoly0175s0011 [KOG4172] Predicted E3 ubiquitin ligase; [PTHR15600] FAMILY NOT NAMED; [PF13920] Zinc finger, C3HC4 type (RING finger)72.380.6474
39 Mapoly0022s0125 [PTHR19876:SF2] COATOMER BETA SUBUNIT; [GO:0016192] vesicle-mediated transport; [KOG0276] Vesicle coat complex COPI, beta' subunit; [GO:0005515] protein binding; [PTHR19876] COATOMER; [PF04053] Coatomer WD associated region; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [GO:0005198] structural molecule activity; [PF00400] WD domain, G-beta repeat73.790.6284
40 Mapoly0031s0140 [GO:0016307] phosphatidylinositol phosphate kinase activity; [KOG0230] Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins; [GO:0005524] ATP binding; [GO:0044267] cellular protein metabolic process; [PF01504] Phosphatidylinositol-4-phosphate 5-Kinase; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [K00921] 1-phosphatidylinositol-3-phosphate 5-kinase [EC:2.7.1.150]; [2.7.1.150] 1-phosphatidylinositol-3-phosphate 5-kinase.; [GO:0046872] metal ion binding; [GO:0046488] phosphatidylinositol metabolic process; [PF01363] FYVE zinc finger76.010.6211
41 Mapoly0033s0105 [PF03470] XS zinc finger domain; [PTHR21596] RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED; [PF03468] XS domain; [GO:0031047] gene silencing by RNA87.310.6141
42 Mapoly0035s0057 [PF03109] ABC1 family; [PTHR10566] CHAPERONE-ACTIVITY OF BC1 COMPLEX (CABC1)-RELATED; [KOG1235] Predicted unusual protein kinase; [K08869] aarF domain-containing kinase87.910.5599
43 Mapoly0101s0045 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [GO:0005515] protein binding; [K08873] PI-3-kinase-related kinase SMG-1; [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED88.490.6536
44 Mapoly0148s0007 [GO:0016020] membrane; [PTHR12741] LYST-INTERACTING PROTEIN LIP5 (DOPAMINE RESPONSIVE PROTEIN DRG-1); [PF02364] 1,3-beta-glucan synthase component; [GO:0006075] (1-3)-beta-D-glucan biosynthetic process; [KOG0916] 1,3-beta-glucan synthase/callose synthase catalytic subunit; [GO:0000148] 1,3-beta-D-glucan synthase complex; [PF14288] 1,3-beta-glucan synthase subunit FKS1, domain-1; [K11000] callose synthase [EC:2.4.1.-]; [GO:0003843] 1,3-beta-D-glucan synthase activity; [PTHR12741:SF8] gb def: CG7967-PA (GH19706p) (RH70193p); [2.4.1.-] Hexosyltransferases.89.330.6476
45 Mapoly0082s0083 [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [KOG1788] Uncharacterized conserved protein; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat89.800.6465
46 Mapoly0065s0073 [KOG0010] Ubiquitin-like protein; [PTHR10677:SF3] UBIQUITIN FAMILY PROTEIN; [GO:0005515] protein binding; [PTHR10677] UBIQUILIN; [PF00627] UBA/TS-N domain; [PF00240] Ubiquitin family; [K04523] ubiquilin90.150.5313
47 Mapoly0076s0036 [PF06101] Plant protein of unknown function (DUF946); [PTHR16166] VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13); [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter; [PTHR16166:SF61] PUTATIVE UNCHARACTERIZED PROTEIN92.740.6326
48 Mapoly0009s0021 [PF04815] Sec23/Sec24 helical domain; [GO:0008270] zinc ion binding; [KOG1984] Vesicle coat complex COPII, subunit SFB3; [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [K14007] protein transport protein SEC24; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR13803] SEC24-RELATED PROTEIN; [GO:0006888] ER to Golgi vesicle-mediated transport; [PF00626] Gelsolin repeat96.070.6130
49 Mapoly0086s0049 [PF01602] Adaptin N terminal region; [GO:0005737] cytoplasm; [GO:0016192] vesicle-mediated transport; [PF07718] Coatomer beta C-terminal region; [PF14806] Coatomer beta subunit appendage platform; [GO:0030126] COPI vesicle coat; [KOG1058] Vesicle coat complex COPI, beta subunit; [PTHR10635] COATOMER SUBUNIT BETA; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [GO:0005198] structural molecule activity97.080.6029
50 Mapoly0012s0193 [PTHR31365] FAMILY NOT NAMED102.490.5807
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