Guide Gene

Gene ID
Mapoly0030s0155
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0005086] ARF guanyl-nucleotide exchange factor activity; [PF09324] Domain of unknown function (DUF1981); [PF12783] Guanine nucleotide exchange factor in Golgi transport N-terminal; [KOG0929] Guanine nucleotide exchange factor; [PTHR10663] GUANYL-NUCLEOTIDE EXCHANGE FACTOR; [PF01369] Sec7 domain; [GO:0032012] regulation of ARF protein signal transduction

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0030s0155 [GO:0005086] ARF guanyl-nucleotide exchange factor activity; [PF09324] Domain of unknown function (DUF1981); [PF12783] Guanine nucleotide exchange factor in Golgi transport N-terminal; [KOG0929] Guanine nucleotide exchange factor; [PTHR10663] GUANYL-NUCLEOTIDE EXCHANGE FACTOR; [PF01369] Sec7 domain; [GO:0032012] regulation of ARF protein signal transduction 0.00 1.0000
1 Mapoly0007s0005 [PF06957] Coatomer (COPI) alpha subunit C-terminus; [GO:0016192] vesicle-mediated transport; [K05236] coatomer protein complex, subunit alpha (xenin); [KOG0292] Vesicle coat complex COPI, alpha subunit; [GO:0005515] protein binding; [PTHR19876:SF1] COATOMER ALPHA SUBUNIT; [PTHR19876] COATOMER; [GO:0030126] COPI vesicle coat; [PF04053] Coatomer WD associated region; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [GO:0005198] structural molecule activity; [PF00400] WD domain, G-beta repeat1.410.8720
2 Mapoly0036s0102 [PTHR11216] EH DOMAIN; [GO:0005509] calcium ion binding; [PF13202] EF hand; [PF12763] Cytoskeletal-regulatory complex EF hand2.450.8488
3 Mapoly0143s0007 [PF08314] Secretory pathway protein Sec39; [PTHR15922:SF2] SUBFAMILY NOT NAMED; [PTHR15922] FAMILY NOT NAMED2.650.8426
4 Mapoly0022s0125 [PTHR19876:SF2] COATOMER BETA SUBUNIT; [GO:0016192] vesicle-mediated transport; [KOG0276] Vesicle coat complex COPI, beta' subunit; [GO:0005515] protein binding; [PTHR19876] COATOMER; [PF04053] Coatomer WD associated region; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [GO:0005198] structural molecule activity; [PF00400] WD domain, G-beta repeat2.830.8666
5 Mapoly0038s0024 [PTHR19878] AUTOPHAGY PROTEIN 16-LIKE3.000.8608
6 Mapoly0086s0049 [PF01602] Adaptin N terminal region; [GO:0005737] cytoplasm; [GO:0016192] vesicle-mediated transport; [PF07718] Coatomer beta C-terminal region; [PF14806] Coatomer beta subunit appendage platform; [GO:0030126] COPI vesicle coat; [KOG1058] Vesicle coat complex COPI, beta subunit; [PTHR10635] COATOMER SUBUNIT BETA; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [GO:0005198] structural molecule activity4.000.8598
7 Mapoly0099s0021 [PF10351] Golgi-body localisation protein domain; [KOG1910] Uncharacterized conserved protein; [PF10347] RNA pol II promoter Fmp27 protein domain; [PTHR15678:SF6] SUBFAMILY NOT NAMED; [PTHR15678] ANTIGEN MLAA-22-RELATED4.120.8073
8 Mapoly0005s0083 [PF01602] Adaptin N terminal region; [GO:0016192] vesicle-mediated transport; [GO:0030126] COPI vesicle coat; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [KOG1078] Vesicle coat complex COPI, gamma subunit; [PF08752] Coatomer gamma subunit appendage platform subdomain; [GO:0005198] structural molecule activity; [PTHR10261] COATOMER SUBUNIT GAMMA7.750.8285
9 Mapoly0045s0097 [GO:0030130] clathrin coat of trans-Golgi network vesicle; [PF00637] Region in Clathrin and VPS; [GO:0016192] vesicle-mediated transport; [PF09268] Clathrin, heavy-chain linker; [PF13838] Clathrin-H-link; [K04646] clathrin heavy chain; [GO:0006886] intracellular protein transport; [GO:0030132] clathrin coat of coated pit; [KOG0985] Vesicle coat protein clathrin, heavy chain; [PF01394] Clathrin propeller repeat; [GO:0005198] structural molecule activity; [PTHR10292] CLATHRIN HEAVY CHAIN8.060.8489
10 Mapoly0009s0042 [KOG1985] Vesicle coat complex COPII, subunit SEC24/subunit SFB2; [PF04815] Sec23/Sec24 helical domain; [GO:0008270] zinc ion binding; [PTHR13803:SF4] gb def: SED5-binding protein 3 (SEC24-related protein 3) (Lethal with SEC13 protein 1); [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [K14007] protein transport protein SEC24; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR13803] SEC24-RELATED PROTEIN; [GO:0006888] ER to Golgi vesicle-mediated transport9.490.8124
11 Mapoly0012s0190 [GO:0003723] RNA binding; [GO:0005524] ATP binding; [GO:0003774] motor activity; [PTHR13140] MYOSIN; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PF01843] DIL domain; [GO:0005515] protein binding; [KOG0160] Myosin class V heavy chain; [PF00612] IQ calmodulin-binding motif; [PF02736] Myosin N-terminal SH3-like domain; [PF00013] KH domain; [GO:0046872] metal ion binding; [PF00063] Myosin head (motor domain); [GO:0016459] myosin complex9.800.8087
12 Mapoly0006s0304 [KOG2033] Low density lipoprotein B-like protein; [PTHR31658:SF0] SUBFAMILY NOT NAMED; [PF08700] Vps51/Vps67; [PTHR31658] FAMILY NOT NAMED10.950.7856
13 Mapoly0105s0052 [PTHR32387] FAMILY NOT NAMED; [PF13020] Domain of unknown function (DUF3883); [PTHR32387:SF0] SUBFAMILY NOT NAMED11.490.7661
14 Mapoly0100s0023 [GO:0005086] ARF guanyl-nucleotide exchange factor activity; [PF12783] Guanine nucleotide exchange factor in Golgi transport N-terminal; [PTHR10663] GUANYL-NUCLEOTIDE EXCHANGE FACTOR; [PF01369] Sec7 domain; [GO:0032012] regulation of ARF protein signal transduction; [KOG0928] Pattern-formation protein/guanine nucleotide exchange factor11.830.8387
15 Mapoly0003s0171 [GO:0005086] ARF guanyl-nucleotide exchange factor activity; [PF09324] Domain of unknown function (DUF1981); [PF12783] Guanine nucleotide exchange factor in Golgi transport N-terminal; [KOG0929] Guanine nucleotide exchange factor; [PTHR10663] GUANYL-NUCLEOTIDE EXCHANGE FACTOR; [K13462] guanine nucleotide-exchange factor; [PF01369] Sec7 domain; [GO:0032012] regulation of ARF protein signal transduction13.750.8407
16 Mapoly0082s0083 [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [KOG1788] Uncharacterized conserved protein; [PF02138] Beige/BEACH domain; [PF13385] Concanavalin A-like lectin/glucanases superfamily; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat13.860.8424
17 Mapoly0004s0252 [GO:0004843] ubiquitin-specific protease activity; [3.1.2.15] Ubiquitin thiolesterase.; [PTHR24006:SF24] SUBFAMILY NOT NAMED; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [K11835] ubiquitin carboxyl-terminal hydrolase 4/11/15 [EC:3.1.2.15]; [GO:0006511] ubiquitin-dependent protein catabolic process; [PF14836] Ubiquitin-like domain; [PTHR24006] FAMILY NOT NAMED; [PF06337] DUSP domain; [KOG1870] Ubiquitin C-terminal hydrolase15.000.7895
18 Mapoly0090s0030 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation15.200.8333
19 Mapoly0051s0033 [PTHR32060] FAMILY NOT NAMED; [PF03572] Peptidase family S41; [PF00595] PDZ domain (Also known as DHR or GLGF); [GO:0008236] serine-type peptidase activity; [GO:0005515] protein binding; [GO:0006508] proteolysis15.490.7225
20 Mapoly0003s0046 [GO:0016020] membrane; [PTHR12961] CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2; [GO:0015031] protein transport; [KOG2307] Low density lipoprotein receptor; [GO:0007030] Golgi organization; [PF06148] COG (conserved oligomeric Golgi) complex component, COG2; [PF12022] Domain of unknown function (DUF3510)16.160.7857
21 Mapoly0072s0011 [PF01602] Adaptin N terminal region; [PTHR22780] ADAPTIN, ALPHA/GAMMA/EPSILON; [GO:0016192] vesicle-mediated transport; [KOG1077] Vesicle coat complex AP-2, alpha subunit; [PF02883] Adaptin C-terminal domain; [PF02296] Alpha adaptin AP2, C-terminal domain; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [PTHR22780:SF4] ADAPTER-RELATED PROTEIN COMPLEX 2 ALPHA 1 SUBUNIT (ALPHA-ADAPTIN A); [K11824] AP-2 complex subunit alpha17.660.7912
22 Mapoly0022s0120 [PTHR23323] VACUOLAR MEMBRANE PROTEIN RELATED; [PF00637] Region in Clathrin and VPS; [PF12451] Vacuolar protein sorting protein 11 C terminal; [GO:0016192] vesicle-mediated transport; [GO:0006886] intracellular protein transport; [PTHR23323:SF24] VACUOLAR MEMBRANE PROTEIN PEP5, 11; [KOG2114] Vacuolar assembly/sorting protein PEP5/VPS1118.030.7323
23 Mapoly0056s0137 [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [PTHR13743:SF16] SUBFAMILY NOT NAMED; [KOG1787] Kinase A-anchor protein Neurobeachin and related BEACH and WD40 repeat proteins; [PF02138] Beige/BEACH domain; [PF14844] PH domain associated with Beige/BEACH; [PF00400] WD domain, G-beta repeat18.730.8280
24 Mapoly0012s0024 -18.760.7938
25 Mapoly0004s0108 [GO:0007067] mitosis; [K11578] centromere/kinetochore protein ZW10; [GO:0005634] nucleus; [PTHR12205:SF0] SUBFAMILY NOT NAMED; [GO:0000775] chromosome, centromeric region; [PTHR12205] CENTROMERE/KINETOCHORE PROTEIN ZW10; [PF06248] Centromere/kinetochore Zw1019.050.6927
26 Mapoly0022s0045 [PTHR10121:SF0] COATOMER SUBUNIT DELTA; [GO:0016192] vesicle-mediated transport; [GO:0005515] protein binding; [GO:0030126] COPI vesicle coat; [PF00928] Adaptor complexes medium subunit family; [KOG2635] Medium subunit of clathrin adaptor complex; [GO:0006890] retrograde vesicle-mediated transport, Golgi to ER; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [PTHR10121] COATOMER SUBUNIT DELTA19.210.7701
27 Mapoly0087s0079 [KOG4172] Predicted E3 ubiquitin ligase; [PF13920] Zinc finger, C3HC4 type (RING finger)19.620.7739
28 Mapoly0101s0033 [PTHR21663] HYPOTHETICAL HEAT DOMAIN-CONTAINING; [KOG1822] Uncharacterized conserved protein; [PTHR21663:SF0] SUBFAMILY NOT NAMED19.800.8152
29 Mapoly0035s0061 [KOG2056] Equilibrative nucleoside transporter protein; [PF01417] ENTH domain; [PTHR12276] EPSIN/ENT-RELATED20.150.7396
30 Mapoly0025s0051 [PTHR12984] SCY1-RELATED S/T PROTEIN KINASE-LIKE; [GO:0005524] ATP binding; [PTHR12984:SF3] SCY1(YEAST) PROTEIN KINASE-LIKE; [KOG1243] Protein kinase; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [K08876] SCY1-like21.730.6945
31 Mapoly0023s0171 [GO:0016021] integral to membrane; [GO:0008381] mechanically-gated ion channel activity; [PTHR13167] UNCHARACTERIZED; [PF12166] Protein of unknown function (DUF3595); [PTHR13167:SF25] PREDICTED: SIMILAR TO MIB23.000.7920
32 Mapoly0123s0038 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [K11844] ubiquitin carboxyl-terminal hydrolase 16/45 [EC:3.1.2.15]; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0008270] zinc ion binding; [KOG1873] Ubiquitin-specific protease; [PTHR24006] FAMILY NOT NAMED; [PF02148] Zn-finger in ubiquitin-hydrolases and other protein26.500.7895
33 Mapoly0049s0060 [KOG1811] Predicted Zn2+-binding protein, contains FYVE domain27.200.7978
34 Mapoly0224s0002 -27.240.7457
35 Mapoly0125s0045 [PF05664] Protein of unknown function (DUF810); [PTHR31280] FAMILY NOT NAMED27.550.7291
36 Mapoly0013s0180 [PF12329] TATA element modulatory factor 1 DNA binding; [PTHR13140] MYOSIN; [KOG4673] Transcription factor TMF, TATA element modulatory factor; [PF12325] TATA element modulatory factor 1 TATA binding28.280.7714
37 Mapoly0082s0043 [GO:0046034] ATP metabolic process; [GO:0005524] ATP binding; [3.6.3.14] H(+)-transporting two-sector ATPase.; [PF00006] ATP synthase alpha/beta family, nucleotide-binding domain; [GO:0015992] proton transport; [K02133] F-type H+-transporting ATPase subunit beta [EC:3.6.3.14]; [KOG1350] F0F1-type ATP synthase, beta subunit; [GO:0033178] proton-transporting two-sector ATPase complex, catalytic domain; [GO:0015991] ATP hydrolysis coupled proton transport; [GO:0016820] hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; [PF02874] ATP synthase alpha/beta family, beta-barrel domain; [PTHR15184] ATP SYNTHASE; [PF00306] ATP synthase alpha/beta chain, C terminal domain28.900.6580
38 Mapoly0130s0022 [GO:0008565] protein transporter activity; [PF01602] Adaptin N terminal region; [PTHR22780] ADAPTIN, ALPHA/GAMMA/EPSILON; [GO:0016192] vesicle-mediated transport; [GO:0015031] protein transport; [PTHR22780:SF5] ADAPTER-RELATED PROTEIN COMPLEX 1 GAMMA SUBUNIT (GAMMA-ADAPTIN); [PF02883] Adaptin C-terminal domain; [KOG1062] Vesicle coat complex AP-1, gamma subunit; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [K12391] AP-1 complex subunit gamma-1; [GO:0005794] Golgi apparatus29.460.7351
39 Mapoly0167s0007 [PF12783] Guanine nucleotide exchange factor in Golgi transport N-terminal; [GO:0015031] protein transport; [PTHR10663] GUANYL-NUCLEOTIDE EXCHANGE FACTOR; [KOG1848] Uncharacterized conserved protein29.980.7822
40 Mapoly0109s0022 [GO:0016020] membrane; [PTHR13302] CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 3; [GO:0005801] cis-Golgi network; [GO:0006886] intracellular protein transport; [KOG2604] Subunit of cis-Golgi transport vesicle tethering complex - Sec34p; [PF04136] Sec34-like family30.200.7397
41 Mapoly0029s0137 -30.250.6500
42 Mapoly0014s0213 [KOG1991] Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily); [PF08506] Cse1; [PF03810] Importin-beta N-terminal domain; [GO:0005515] protein binding; [PF03378] CAS/CSE protein, C-terminus; [PTHR10997:SF18] IMPORTIN 7, 8 (IMP7, 8) (RAN-BINDING PROTEIN 7, 8); [GO:0006886] intracellular protein transport; [PTHR10997] IMPORTIN-7, 8, 11; [GO:0008536] Ran GTPase binding30.380.7282
43 Mapoly0117s0034 [PF00168] C2 domain; [PF12357] Phospholipase D C terminal; [GO:0005515] protein binding; [PTHR18896] PHOSPHOLIPASE D; [PF00614] Phospholipase D Active site motif; [GO:0008152] metabolic process; [GO:0003824] catalytic activity; [KOG1329] Phospholipase D1; [PTHR18896:SF11] PHOPHOLIPASE D ALPHA31.940.6140
44 Mapoly0023s0169 -33.820.6744
45 Mapoly0156s0008 [PTHR13923] SEC31-RELATED PROTEIN; [GO:0005515] protein binding; [KOG0307] Vesicle coat complex COPII, subunit SEC31; [K14005] protein transport protein SEC31; [PF12931] Sec23-binding domain of Sec16; [PF00400] WD domain, G-beta repeat33.940.7639
46 Mapoly0101s0045 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [GO:0005515] protein binding; [K08873] PI-3-kinase-related kinase SMG-1; [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED34.320.7993
47 Mapoly0076s0036 [PF06101] Plant protein of unknown function (DUF946); [PTHR16166] VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13); [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter; [PTHR16166:SF61] PUTATIVE UNCHARACTERIZED PROTEIN34.990.7775
48 Mapoly0138s0020 [PTHR23213] FORMIN-RELATED; [PF02181] Formin Homology 2 Domain; [PF10409] C2 domain of PTEN tumour-suppressor protein; [KOG1922] Rho GTPase effector BNI1 and related formins35.000.7630
49 Mapoly0004s0114 [PF03097] BRO1-like domain; [K12200] programmed cell death 6-interacting protein; [PTHR23030] PCD6 INTERACTING PROTEIN-RELATED; [KOG2220] Predicted signal transduction protein; [GO:0005515] protein binding; [PF13949] ALIX V-shaped domain binding to HIV; [PTHR23030:SF13] SUBFAMILY NOT NAMED35.100.7418
50 Mapoly0170s0008 [K06111] exocyst complex component 4; [GO:0006904] vesicle docking involved in exocytosis; [PF04048] Sec8 exocyst complex component specific domain; [GO:0000145] exocyst; [PTHR14146] EXOCYST COMPLEX COMPONENT 4; [GO:0015031] protein transport35.240.7451
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