Guide Gene

Gene ID
Mapoly0001s0456
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG3473] RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C; [K03872] transcription elongation factor B, polypeptide 1; [GO:0006511] ubiquitin-dependent protein catabolic process; [PTHR20648] FAMILY NOT NAMED; [PF03931] Skp1 family, tetramerisation domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0001s0456 [KOG3473] RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C; [K03872] transcription elongation factor B, polypeptide 1; [GO:0006511] ubiquitin-dependent protein catabolic process; [PTHR20648] FAMILY NOT NAMED; [PF03931] Skp1 family, tetramerisation domain 0.00 1.0000
1 Mapoly0019s0137 [PF03908] Sec20; [K08497] protein transport protein SEC20; [PTHR12825] BNIP1-RELATED; [PTHR12825:SF0] SUBFAMILY NOT NAMED3.000.8600
2 Mapoly0094s0077 -4.470.8249
3 Mapoly0038s0068 [PTHR14534:SF2] SUBFAMILY NOT NAMED; [PF09783] Vacuolar import and degradation protein; [PTHR14534] FAMILY NOT NAMED5.100.8584
4 Mapoly0001s0441 [PTHR15664] C20ORF30 PROTEIN; [PF05915] Eukaryotic protein of unknown function (DUF872); [KOG4753] Predicted membrane protein6.930.8275
5 Mapoly0058s0033 [PTHR20383] FAMILY NOT NAMED; [KOG2424] Protein involved in transcription start site selection; [GO:0004721] phosphoprotein phosphatase activity; [GO:0006397] mRNA processing; [GO:0005634] nucleus; [PF04722] Ssu72-like protein6.930.8132
6 Mapoly0012s0169 [PTHR22504] REPRESSOR OF RNA POLYMERASE III TRANSCRIPTION MAF1; [PTHR22504:SF0] SUBFAMILY NOT NAMED; [PF09174] Maf1 regulator; [KOG3104] Mod5 protein sorting/negative effector of RNA Pol III synthesis; [GO:0016480] negative regulation of transcription from RNA polymerase III promoter8.600.7897
7 Mapoly0001s0064 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0008173] RNA methyltransferase activity; [PTHR12029] RNA METHYLTRANSFERASE; [KOG0838] RNA Methylase, SpoU family; [PF00588] SpoU rRNA Methylase family8.660.8345
8 Mapoly0090s0046 [GO:0003677] DNA binding; [KOG1756] Histone 2A; [K11251] histone H2A; [PTHR23430] HISTONE H2A; [PF00125] Core histone H2A/H2B/H3/H49.540.8287
9 Mapoly0055s0016 [PF00450] Serine carboxypeptidase; [3.4.16.5] Carboxypeptidase C.; [K13289] cathepsin A (carboxypeptidase C) [EC:3.4.16.5]; [PTHR11802] SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE; [KOG1282] Serine carboxypeptidases (lysosomal cathepsin A); [GO:0006508] proteolysis; [GO:0004185] serine-type carboxypeptidase activity10.770.7952
10 Mapoly0025s0126 [KOG4764] Uncharacterized conserved protein; [PF05160] DSS1/SEM1 family; [PTHR16771:SF0] SUBFAMILY NOT NAMED; [PTHR16771] 26 PROTEASOME COMPLEX SUBUNIT DSS111.220.8292
11 Mapoly0173s0018 [KOG2351] RNA polymerase II, fourth largest subunit; [PTHR21297] DNA-DIRECTED RNA POLYMERASE II; [PF03874] RNA polymerase Rpb4; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [K03012] DNA-directed RNA polymerase II subunit RPB412.730.7964
12 Mapoly0081s0075 [PF06749] Protein of unknown function (DUF1218); [PTHR31769] FAMILY NOT NAMED12.960.8401
13 Mapoly0055s0054 [PTHR13476] UNCHARACTERIZED; [PTHR13476:SF0] SUBFAMILY NOT NAMED; [PF09340] Histone acetyltransferase subunit NuA4; [K11344] chromatin modification-related protein EAF613.270.7867
14 Mapoly0099s0054 [GO:0035064] methylated histone residue binding; [PTHR10333] INHIBITOR OF GROWTH PROTEIN; [PF12998] Inhibitor of growth proteins N-terminal histone-binding; [PF00628] PHD-finger; [GO:0005515] protein binding; [KOG1973] Chromatin remodeling protein, contains PHD Zn-finger; [GO:0016568] chromatin modification; [GO:0005634] nucleus13.860.7839
15 Mapoly0037s0101 [PTHR31126:SF0] SUBFAMILY NOT NAMED; [PF03162] Tyrosine phosphatase family; [PTHR31126] FAMILY NOT NAMED14.070.8247
16 Mapoly0048s0015 [K00721] dolichol-phosphate mannosyltransferase [EC:2.4.1.83]; [PTHR10859] GLYCOSYL TRANSFERASE; [2.4.1.83] Dolichyl-phosphate beta-D-mannosyltransferase.; [KOG2978] Dolichol-phosphate mannosyltransferase; [PF00535] Glycosyl transferase family 214.700.8201
17 Mapoly0127s0049 [K04649] ubiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:6.3.2.19]; [GO:0005515] protein binding; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0418] Ubiquitin-protein ligase; [PF00627] UBA/TS-N domain; [PTHR24067:SF29] UBIQUITIN-CONJUGATING ENZYME E2 K; [PF00179] Ubiquitin-conjugating enzyme14.700.7710
18 Mapoly0107s0014 -17.440.7896
19 Mapoly0013s0162 [GO:0005515] protein binding; [PF02201] SWIB/MDM2 domain; [PTHR13844] BRG-1 ASSOCIATED FACTOR 60 (BAF60)18.970.8002
20 Mapoly0029s0079 [GO:0042393] histone binding; [PF12165] Domain of unknown function (DUF3594); [GO:0006355] regulation of transcription, DNA-dependent; [KOG1632] Uncharacterized PHD Zn-finger protein; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR12321] CPG BINDING PROTEIN19.180.8023
21 Mapoly0054s0023 [PTHR24320] FAMILY NOT NAMED; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [KOG1208] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); [PF00106] short chain dehydrogenase19.440.7822
22 Mapoly0135s0041 [GO:0005840] ribosome; [GO:0006414] translational elongation; [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [KOG1762] 60s acidic ribosomal protein P1; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [K02942] large subunit ribosomal protein LP1; [PF00428] 60s Acidic ribosomal protein19.750.8522
23 Mapoly0001s0452 [KOG0798] Uncharacterized conserved protein; [PTHR13395:SF6] SUBFAMILY NOT NAMED; [PF09724] Uncharacterized conserved protein (DUF2036); [K11271] sister chromatid cohesion protein DCC1; [PTHR13395] SISTER CHROMATID COHESION PROTEIN DCC1-RELATED21.770.7277
24 Mapoly0007s0039 [PTHR12357] YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING; [PF04146] YT521-B-like domain22.980.7406
25 Mapoly0108s0016 -23.240.8142
26 Mapoly0151s0039 [PTHR13345:SF2] NUT2; [KOG3046] Transcription factor, subunit of SRB subcomplex of RNA polymerase II; [GO:0006357] regulation of transcription from RNA polymerase II promoter; [GO:0001104] RNA polymerase II transcription cofactor activity; [GO:0016592] mediator complex; [PF09748] Transcription factor subunit Med10 of Mediator complex; [PTHR13345] NUT2 AND UXT24.250.7328
27 Mapoly0010s0048 -26.830.8069
28 Mapoly0107s0018 [GO:0015035] protein disulfide oxidoreductase activity; [PTHR13887] GLUTATHIONE S-TRANSFERASE KAPPA; [PF01323] DSBA-like thioredoxin domain28.200.7275
29 Mapoly0161s0021 [K11805] WD repeat-containing protein 68; [GO:0005515] protein binding; [KOG0290] Conserved WD40 repeat-containing protein AN11; [PTHR19919] WD REPEAT CONTAINING PROTEIN; [PF00400] WD domain, G-beta repeat28.530.7704
30 Mapoly0033s0127 [PF01713] Smr domain; [PTHR13308] UNCHARACTERIZED; [PF08590] Domain of unknown function (DUF1771)28.930.7943
31 Mapoly0007s0109 -29.390.7942
32 Mapoly0039s0081 -32.000.7751
33 Mapoly0011s0077 [PTHR23419:SF0] SUBFAMILY NOT NAMED; [KOG3338] Divalent cation tolerance-related protein; [GO:0010038] response to metal ion; [PF03091] CutA1 divalent ion tolerance protein; [K03926] periplasmic divalent cation tolerance protein; [PTHR23419] DIVALENT CATION TOLERANCE CUTA-RELATED32.620.7961
34 Mapoly0066s0049 [PTHR12056] DNA-DIRECTED RNA POLYMERASES I, II, AND III; [GO:0003677] DNA binding; [KOG3507] DNA-directed RNA polymerase, subunit RPB7.0; [K03009] DNA-directed RNA polymerases I, II, and III subunit RPABC4; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF03604] DNA directed RNA polymerase, 7 kDa subunit33.880.8164
35 Mapoly0002s0230 [GO:0003677] DNA binding; [GO:0000784] nuclear chromosome, telomeric region; [PF02765] Telomeric single stranded DNA binding POT1/CDC13; [GO:0043047] single-stranded telomeric DNA binding; [PTHR14513] PROTECTION OF TELOMERES 1; [KOG4757] Predicted telomere binding protein; [GO:0000723] telomere maintenance34.060.7464
36 Mapoly0006s0223 [PF01987] Mitochondrial biogenesis AIM24; [PTHR31801] FAMILY NOT NAMED34.250.8113
37 Mapoly0012s0181 [GO:0005840] ribosome; [PTHR12010] 40S RIBOSOMAL PROTEIN S29; [KOG3506] 40S ribosomal protein S29; [K02980] small subunit ribosomal protein S29e; [PF00253] Ribosomal protein S14p/S29e; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation38.180.8271
38 Mapoly0024s0085 [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [PTHR10696] GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED; [PF02668] Taurine catabolism dioxygenase TauD, TfdA family39.240.7064
39 Mapoly0107s0039 [PF03819] MazG nucleotide pyrophosphohydrolase domain; [PTHR14552:SF2] SUBFAMILY NOT NAMED; [PTHR14552] FAMILY NOT NAMED; [PF13837] Myb/SANT-like DNA-binding domain39.570.7216
40 Mapoly0170s0033 [PTHR11669] REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT; [KOG2035] Replication factor C, subunit RFC3; [PF13177] DNA polymerase III, delta subunit; [PTHR11669:SF1] DNA POLYMERASE III SUBUNIT GAMMA/TAU; [PF08542] Replication factor C C-terminal domain; [K10756] replication factor C subunit 3/539.660.7355
41 Mapoly0008s0153 [K04554] ubiquitin-conjugating enzyme E2 J2 [EC:6.3.2.19]; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0894] Ubiquitin-protein ligase; [PF00179] Ubiquitin-conjugating enzyme; [PTHR24067:SF42] UBIQUITIN-CONJUGATING ENZYME E2 J241.670.7429
42 Mapoly0037s0056 [GO:0003677] DNA binding; [KOG1745] Histones H3 and H4; [GO:0000786] nucleosome; [K11253] histone H3; [PTHR11426] HISTONE H3; [PF00125] Core histone H2A/H2B/H3/H444.670.7903
43 Mapoly0013s0130 [PF11221] Subunit 21 of Mediator complex; [PTHR13381] RNA POLYMERASE II HOLOENZYME COMPONENT SRB7; [KOG1510] RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB746.450.7236
44 Mapoly0062s0043 [PF00782] Dual specificity phosphatase, catalytic domain; [K14165] dual specificity phosphatase [EC:3.1.3.16 3.1.3.48]; [GO:0006470] protein dephosphorylation; [KOG1716] Dual specificity phosphatase; [PTHR10159] DUAL SPECIFICITY PROTEIN PHOSPHATASE; [3.1.3.16] Phosphoprotein phosphatase.; [GO:0008138] protein tyrosine/serine/threonine phosphatase activity; [3.1.3.48] Protein-tyrosine-phosphatase.46.900.7548
45 Mapoly0090s0015 [GO:0005840] ribosome; [K02971] small subunit ribosomal protein S21e; [PTHR10442] 40S RIBOSOMAL PROTEIN S21; [KOG3486] 40S ribosomal protein S21; [PF01249] Ribosomal protein S21e; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [GO:0006412] translation47.010.8176
46 Mapoly0088s0088 [PF02672] CP12 domain47.620.7422
47 Mapoly0035s0029 [PF10602] 26S proteasome subunit RPN7; [KOG0686] COP9 signalosome, subunit CSN1; [GO:0005515] protein binding; [PTHR14145] 26S PROTESOME SUBUNIT 6; [PTHR14145:SF2] COP9 SIGNALOSOME COMPLEX SUBUNIT 1; [PF01399] PCI domain; [K12175] COP9 signalosome complex subunit 149.640.7501
48 Mapoly0076s0002 [PTHR14854] NIF3L1BP1 PROTEIN-RELATED; [KOG3215] Uncharacterized conserved protein; [GO:0000445] THO complex part of transcription export complex; [GO:0006397] mRNA processing; [K13176] THO complex subunit 7; [PF05615] Tho complex subunit 750.020.7379
49 Mapoly0028s0130 [PTHR12452] 42-9-9 PROTEIN-RELATED; [KOG3425] Uncharacterized conserved protein; [PF06110] Eukaryotic protein of unknown function (DUF953)51.700.6751
50 Mapoly0070s0078 [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [PTHR13355] GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE; [PTHR13355:SF2] gb def: acetyltransferase (gnat) family [caenorhabditis elegans]51.730.6221
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