Guide Gene

Gene ID
Mapoly0095s0002
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [PTHR24031:SF35] DEAD/DEAH BOX HELICASE, PUTATIVE (MITOCHONDRIAL); [GO:0003676] nucleic acid binding

Coexpressed Gene List

Search : Show :

Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0095s0002 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [PTHR24031:SF35] DEAD/DEAH BOX HELICASE, PUTATIVE (MITOCHONDRIAL); [GO:0003676] nucleic acid binding 0.00 1.0000
1 Mapoly0041s0034 [PF03725] 3' exoribonuclease family, domain 2; [GO:0003723] RNA binding; [K00962] polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]; [KOG1067] Predicted RNA-binding polyribonucleotide nucleotidyltransferase; [PF00575] S1 RNA binding domain; [2.7.7.8] Polyribonucleotide nucleotidyltransferase.; [GO:0004654] polyribonucleotide nucleotidyltransferase activity; [PF00013] KH domain; [PTHR11252:SF1] POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; [GO:0006402] mRNA catabolic process; [PF01138] 3' exoribonuclease family, domain 1; [PTHR11252] POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE4.470.8573
2 Mapoly0005s0049 [GO:0005840] ribosome; [PTHR21011] MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6; [KOG4708] Mitochondrial ribosomal protein MRP17; [PF01250] Ribosomal protein S6; [GO:0003735] structural constituent of ribosome; [GO:0019843] rRNA binding; [GO:0006412] translation9.490.8119
3 Mapoly0007s0136 [GO:0005737] cytoplasm; [PTHR11476] HISTIDYL-TRNA SYNTHETASE; [PF13393] Histidyl-tRNA synthetase10.250.8318
4 Mapoly0013s0203 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [PTHR24089:SF45] SUBFAMILY NOT NAMED; [KOG0768] Mitochondrial carrier protein PET814.070.8259
5 Mapoly0137s0001 [GO:0004830] tryptophan-tRNA ligase activity; [6.1.1.2] Tryptophan--tRNA ligase.; [GO:0005524] ATP binding; [PF00579] tRNA synthetases class I (W and Y); [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [K01867] tryptophanyl-tRNA synthetase [EC:6.1.1.2]; [GO:0006436] tryptophanyl-tRNA aminoacylation; [GO:0006418] tRNA aminoacylation for protein translation; [KOG2713] Mitochondrial tryptophanyl-tRNA synthetase; [PTHR10055] TRYPTOPHANYL-TRNA SYNTHETASE; [GO:0004812] aminoacyl-tRNA ligase activity14.490.8519
6 Mapoly0005s0038 [KOG2743] Cobalamin synthesis protein; [PTHR13748:SF11] PRLI-INTERACTING FACTOR L; [PF07683] Cobalamin synthesis protein cobW C-terminal domain; [PTHR13748] COBW-RELATED; [PF02492] CobW/HypB/UreG, nucleotide-binding domain15.360.8300
7 Mapoly0015s0205 [PTHR12770] FAMILY NOT NAMED; [PTHR12770:SF5] SUBFAMILY NOT NAMED; [PF04884] Vitamin B6 photo-protection and homoeostasis; [KOG4249] Uncharacterized conserved protein16.250.7783
8 Mapoly0005s0156 [GO:0005737] cytoplasm; [PF04055] Radical SAM superfamily; [PTHR30544] 23S RRNA METHYLTRANSFERASE; [GO:0008173] RNA methyltransferase activity; [GO:0003824] catalytic activity; [GO:0006364] rRNA processing; [GO:0051536] iron-sulfur cluster binding16.520.7867
9 Mapoly0058s0025 [GO:0005524] ATP binding; [GO:0044267] cellular protein metabolic process; [PTHR11353:SF11] RUBISCO SUBUNIT BINDING-PROTEIN ALPHA SUBUNIT, RUBA; [PTHR11353] CHAPERONIN; [PF00118] TCP-1/cpn60 chaperonin family; [KOG0356] Mitochondrial chaperonin, Cpn60/Hsp60p21.240.8156
10 Mapoly0010s0063 [PTHR11601] CYSTEINE DESULFURYLASE; [4.4.1.16] Selenocysteine lyase.; [GO:0008152] metabolic process; [KOG1549] Cysteine desulfurase NFS1; [2.8.1.7] Cysteine desulfurase.; [K11717] cysteine desulfurase / selenocysteine lyase [EC:2.8.1.7 4.4.1.16]; [PF00266] Aminotransferase class-V21.420.8018
11 Mapoly0055s0018 [GO:0003723] RNA binding; [K03595] GTP-binding protein Era; [PTHR11649:SF3] GTP-BINDING PROTEIN ERA; [PF01926] 50S ribosome-binding GTPase; [KOG1423] Ras-like GTPase ERA; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [PF07650] KH domain; [GO:0005525] GTP binding21.680.8269
12 Mapoly0107s0036 [PTHR11659] GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED; [PF02637] GatB domain; [GO:0016874] ligase activity; [PTHR11659:SF1] GLUTAMYL-TRNA AMIDOTRANSFERASE SUBUNIT B; [GO:0016884] carbon-nitrogen ligase activity, with glutamine as amido-N-donor; [6.3.5.7] Glutaminyl-tRNA synthase (glutamine-hydrolyzing).; [PF02934] GatB/GatE catalytic domain; [6.3.5.6] Asparaginyl-tRNA synthase (glutamine-hydrolyzing).; [KOG2438] Glutamyl-tRNA amidotransferase subunit B; [K02434] aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]21.820.8007
13 Mapoly0042s0010 [GO:0008168] methyltransferase activity; [K07056] TatD-related deoxyribonuclease; [PF00590] Tetrapyrrole (Corrin/Porphyrin) Methylases; [PTHR21091] METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED; [GO:0008152] metabolic process; [PTHR21091:SF18] S-ADENOSYLMETHIONINE-DEPENDENT METHYTRANSFERASE22.230.6936
14 Mapoly0033s0063 [PTHR31906] FAMILY NOT NAMED; [PF04755] PAP_fibrillin22.520.8140
15 Mapoly0010s0086 [PF08245] Mur ligase middle domain; [GO:0005524] ATP binding; [GO:0009396] folic acid-containing compound biosynthetic process; [PTHR11136] FOLYLPOLYGLUTAMATE SYNTHASE-RELATED; [GO:0009058] biosynthetic process; [KOG2525] Folylpolyglutamate synthase; [PTHR11136:SF5] FOLYLPOLYGLUTAMATE SYNTHASE; [GO:0004326] tetrahydrofolylpolyglutamate synthase activity27.390.7283
16 Mapoly0060s0093 [PTHR21256] HISTIDINOL DEHYDROGENASE (HDH); [GO:0055114] oxidation-reduction process; [K00013] histidinol dehydrogenase [EC:1.1.1.23]; [KOG2697] Histidinol dehydrogenase; [GO:0000105] histidine biosynthetic process; [GO:0008270] zinc ion binding; [GO:0004399] histidinol dehydrogenase activity; [PF00815] Histidinol dehydrogenase; [GO:0051287] NAD binding; [1.1.1.23] Histidinol dehydrogenase.; [PTHR21256:SF2] HISTIDINOL DEHYDROGENASE (HDH)27.710.7536
17 Mapoly0153s0005 [PF06485] Protein of unknown function (DUF1092)29.930.8223
18 Mapoly0020s0120 [K03686] molecular chaperone DnaJ; [GO:0031072] heat shock protein binding; [KOG0715] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PF01556] DnaJ C terminal domain; [PTHR24076] FAMILY NOT NAMED; [PF00684] DnaJ central domain; [GO:0051082] unfolded protein binding30.000.8169
19 Mapoly0025s0053 [PF02576] Uncharacterised BCR, YhbC family COG077930.980.6704
20 Mapoly0059s0075 -32.500.8209
21 Mapoly0047s0104 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family34.290.8064
22 Mapoly0103s0019 [GO:0009523] photosystem II; [PTHR31407] FAMILY NOT NAMED; [GO:0019898] extrinsic to membrane; [GO:0009654] oxygen evolving complex; [PF01789] PsbP; [GO:0005509] calcium ion binding; [GO:0015979] photosynthesis35.240.8093
23 Mapoly0120s0006 [GO:0009231] riboflavin biosynthetic process; [PTHR21058] 6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE (DMRL SYNTHASE) (LUMAZINE SYNTHASE); [PF00885] 6,7-dimethyl-8-ribityllumazine synthase; [GO:0009349] riboflavin synthase complex; [KOG3243] 6,7-dimethyl-8-ribityllumazine synthase; [K00794] 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78]; [2.5.1.78] 6,7-dimethyl-8-ribityllumazine synthase.; [PTHR21058:SF0] SUBFAMILY NOT NAMED35.410.7870
24 Mapoly0068s0103 [GO:0008168] methyltransferase activity; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process; [KOG4300] Predicted methyltransferase35.940.8112
25 Mapoly0027s0170 -37.680.7656
26 Mapoly0027s0161 -39.690.7690
27 Mapoly0267s0001 -39.890.7795
28 Mapoly0062s0099 [PF14237] Domain of unknown function (DUF4339)40.690.8048
29 Mapoly0027s0163 -42.400.7708
30 Mapoly0091s0025 [PF00574] Clp protease; [PTHR10381] ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; [KOG0840] ATP-dependent Clp protease, proteolytic subunit43.270.8020
31 Mapoly0036s0041 [PF11833] Protein of unknown function (DUF3353)44.160.8025
32 Mapoly0080s0087 [PF09285] Elongation factor P, C-terminal; [GO:0003746] translation elongation factor activity; [GO:0006414] translational elongation; [GO:0005737] cytoplasm; [GO:0043043] peptide biosynthetic process; [K02356] elongation factor EF-P; [PF08207] Elongation factor P (EF-P) KOW-like domain; [PF01132] Elongation factor P (EF-P) OB domain; [PTHR30053] ELONGATION FACTOR P44.410.8003
33 Mapoly0088s0012 -45.200.8172
34 Mapoly0086s0021 [PF00226] DnaJ domain; [PTHR24077] FAMILY NOT NAMED45.570.7976
35 Mapoly0005s0181 [GO:0016876] ligase activity, forming aminoacyl-tRNA and related compounds; [PF00749] tRNA synthetases class I (E and Q), catalytic domain; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [GO:0043039] tRNA aminoacylation; [6.1.1.17] Glutamate--tRNA ligase.; [KOG1149] Glutamyl-tRNA synthetase (mitochondrial); [PTHR10119] GLUTAMYL/GLUTAMINYL-TRNA SYNTHETASE; [K01885] glutamyl-tRNA synthetase [EC:6.1.1.17]45.910.7940
36 Mapoly0137s0029 [PTHR10742] AMINE OXIDASE; [PF01593] Flavin containing amine oxidoreductase; [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [PTHR10742:SF30] AMINE OXIDASE; [KOG0029] Amine oxidase46.470.7365
37 Mapoly0027s0162 -47.560.7562
38 Mapoly0027s0165 -52.740.7476
39 Mapoly0069s0053 [GO:0050660] flavin adenine dinucleotide binding; [K03495] glucose inhibited division protein A; [PTHR11806:SF1] GLUCOSE INHIBITED DIVISION PROTEIN A; [PTHR11806] GLUCOSE INHIBITED DIVISION PROTEIN A; [PF01134] Glucose inhibited division protein A; [KOG2311] NAD/FAD-utilizing protein possibly involved in translation; [GO:0008033] tRNA processing; [PF13932] GidA associated domain 353.580.7943
40 Mapoly0027s0169 -55.960.7473
41 Mapoly0007s0262 [GO:0005840] ribosome; [PF01245] Ribosomal protein L19; [KOG1698] Mitochondrial/chloroplast ribosomal protein L19; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PTHR15680] RIBOSOMAL PROTEIN L19; [GO:0006412] translation56.710.8143
42 Mapoly0164s0013 [GO:0051087] chaperone binding; [PTHR21237] GRPE PROTEIN; [PF01025] GrpE; [PTHR21237:SF4] GRPE PROTEIN (HEAT SHOCK PROTEIN) (CGE1); [GO:0006457] protein folding; [GO:0042803] protein homodimerization activity; [K03687] molecular chaperone GrpE; [KOG3003] Molecular chaperone of the GrpE family; [GO:0000774] adenyl-nucleotide exchange factor activity56.920.8045
43 Mapoly0050s0024 [GO:0008168] methyltransferase activity; [PTHR10108] METHYLTRANSFERASE; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process57.690.8113
44 Mapoly0073s0050 -59.280.6926
45 Mapoly0136s0003 [PF01926] 50S ribosome-binding GTPase; [PTHR11702] DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED; [GO:0000166] nucleotide binding; [PTHR11702:SF20] GTP-BINDING PROTEIN; [PF09269] Domain of unknown function (DUF1967); [PF01018] GTP1/OBG; [KOG1489] Predicted GTP-binding protein (ODN superfamily); [GO:0005525] GTP binding60.500.8000
46 Mapoly0030s0153 [PF13460] NADH(P)-binding; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED61.850.7737
47 Mapoly0027s0168 -62.990.7362
48 Mapoly0034s0091 -63.500.8121
49 Mapoly0046s0116 [PF11326] Protein of unknown function (DUF3128)63.950.6436
50 Mapoly0027s0171 -64.300.7234
Showing 1 to 50 of 200 records
S