Guide Gene

Gene ID
Mapoly0088s0090
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF12701] Scd6-like Sm domain; [PTHR13586:SF0] SUBFAMILY NOT NAMED; [KOG1073] Uncharacterized mRNA-associated protein RAP55; [PTHR13586] SCD6 PROTEIN-RELATED; [PF09532] FDF domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0088s0090 [PF12701] Scd6-like Sm domain; [PTHR13586:SF0] SUBFAMILY NOT NAMED; [KOG1073] Uncharacterized mRNA-associated protein RAP55; [PTHR13586] SCD6 PROTEIN-RELATED; [PF09532] FDF domain 0.00 1.0000
1 Mapoly0031s0138 [KOG1931] Putative transmembrane protein; [PTHR13251] EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1; [PF11817] Foie gras liver health family 1; [PF12584] Trafficking protein particle complex subunit 10, TRAPPC1010.100.7963
2 Mapoly0028s0046 [GO:0005643] nuclear pore; [KOG0845] Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116); [GO:0006810] transport; [PF12110] Nuclear protein 96; [PF04096] Nucleoporin autopeptidase; [PTHR23198] NUCLEOPORIN11.750.8030
3 Mapoly0004s0129 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [PF12436] ICP0-binding domain of Ubiquitin-specific protease 7; [PF00917] MATH domain; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0005515] protein binding; [KOG1863] Ubiquitin carboxyl-terminal hydrolase; [PF14533] Ubiquitin-specific protease C-terminal; [PTHR24619] FAMILY NOT NAMED; [K11838] ubiquitin carboxyl-terminal hydrolase 7 [EC:3.1.2.15]17.320.7839
4 Mapoly0009s0229 [PF01987] Mitochondrial biogenesis AIM2418.970.7761
5 Mapoly0020s0090 [K10782] fatty acyl-ACP thioesterase A [EC:3.1.2.14 3.1.2.-]; [3.1.2.14] Oleoyl-[acyl-carrier-protein] hydrolase.; [GO:0016790] thiolester hydrolase activity; [PTHR31727] FAMILY NOT NAMED; [GO:0006633] fatty acid biosynthetic process; [PTHR31727:SF0] SUBFAMILY NOT NAMED; [3.1.2.-] Thiolester hydrolases.; [PF01643] Acyl-ACP thioesterase18.970.7075
6 Mapoly0187s0019 [PF00855] PWWP domain; [PF12243] CTD kinase subunit gamma CTK3; [PTHR12550] HEPATOMA-DERIVED GROWTH FACTOR-RELATED; [KOG2669] Regulator of nuclear mRNA22.110.7915
7 Mapoly0028s0111 [PF07797] Protein of unknown function (DUF1639)27.570.7467
8 Mapoly0001s0364 [PTHR23322] FAS-ASSOCIATED PROTEIN; [PF02809] Ubiquitin interaction motif; [GO:0005515] protein binding; [PF00789] UBX domain; [PTHR23322:SF3] ARA4-INTERACTING PROTEIN29.090.6820
9 Mapoly0016s0170 [PF13513] HEAT-like repeat; [PF03810] Importin-beta N-terminal domain; [GO:0006886] intracellular protein transport; [GO:0008536] Ran GTPase binding; [PTHR10527] IMPORTIN BETA; [KOG1241] Karyopherin (importin) beta 1; [K14293] importin subunit beta-132.190.7564
10 Mapoly0075s0059 [GO:0005524] ATP binding; [KOG0296] Angio-associated migratory cell protein (contains WD40 repeats); [PF00069] Protein kinase domain; [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PF02138] Beige/BEACH domain; [PF00400] WD domain, G-beta repeat32.950.7744
11 Mapoly0121s0051 [KOG1003] Actin filament-coating protein tropomyosin33.470.7691
12 Mapoly0034s0048 [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [PTHR10943:SF2] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 (26S PROTEASOME REGULATORY SUBUNIT RPN2); [KOG2062] 26S proteasome regulatory complex, subunit RPN2/PSMD1; [K03032] 26S proteasome regulatory subunit N2; [PF01851] Proteasome/cyclosome repeat; [PF13646] HEAT repeats34.210.7577
13 Mapoly0006s0080 [GO:0005097] Rab GTPase activator activity; [PTHR21422:SF3] SUBFAMILY NOT NAMED; [PF13890] Rab3 GTPase-activating protein catalytic subunit; [PTHR21422] FAMILY NOT NAMED34.990.6591
14 Mapoly0129s0030 [GO:0005524] ATP binding; [K07760] cyclin-dependent kinase [EC:2.7.11.22]; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PTHR24056:SF92] CELL DIVISION PROTEIN KINASE 8; [GO:0006468] protein phosphorylation; [KOG0666] Cyclin C-dependent kinase CDK8; [2.7.11.22] Cyclin-dependent kinase.; [PTHR24056] CELL DIVISION PROTEIN KINASE39.120.6688
15 Mapoly0004s0082 [GO:0005515] protein binding; [PF00439] Bromodomain; [K11723] bromodomain-containing protein 7/9; [PTHR22881] BROMODOMAIN CONTAINING PROTEIN39.700.7670
16 Mapoly0011s0050 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR21704] NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED; [KOG1020] Sister chromatid cohesion protein SCC2/Nipped-B; [PF12765] HEAT repeat associated with sister chromatid cohesion; [K06672] cohesin loading factor subunit SCC2; [PF12830] Sister chromatid cohesion C-terminus43.870.7616
17 Mapoly0077s0055 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11665] DNA helicase INO80 [EC:3.6.4.12]; [PTHR10799:SF213] DNA HELICASE INO80-RELATED; [GO:0016817] hydrolase activity, acting on acid anhydrides; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [PF13892] DNA-binding domain; [KOG0388] SNF2 family DNA-dependent ATPase43.990.7668
18 Mapoly0103s0007 [PF03143] Elongation factor Tu C-terminal domain; [PF00009] Elongation factor Tu GTP binding domain; [GO:0003924] GTPase activity; [K03267] G1 to S phase transition protein; [PTHR23115] TRANSLATION FACTOR; [PTHR23115:SF36] EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR GTP-BINDING SUBUNIT (ERF2) (TRANSLATION RELEASE FACTOR 3) (ERF3) (ERF-3); [KOG0459] Polypeptide release factor 3; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 245.300.7312
19 Mapoly0055s0121 [KOG1187] Serine/threonine protein kinase; [PF07714] Protein tyrosine kinase; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE46.480.7165
20 Mapoly0013s0152 [PTHR12436:SF4] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8; [KOG1861] Leucine permease transcriptional regulator; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family47.430.7665
21 Mapoly0068s0063 -50.020.7517
22 Mapoly0029s0126 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain51.030.7582
23 Mapoly0019s0183 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PF00433] Protein kinase C terminal domain; [KOG0605] NDR and related serine/threonine kinases; [GO:0006468] protein phosphorylation; [PTHR24358] SERINE/THREONINE-PROTEIN KINASE 38; [GO:0004674] protein serine/threonine kinase activity54.500.7386
24 Mapoly0113s0049 [PTHR32091] FAMILY NOT NAMED54.860.7353
25 Mapoly0003s0232 [PF04815] Sec23/Sec24 helical domain; [K14006] protein transport protein SEC23; [GO:0008270] zinc ion binding; [PTHR11141:SF2] PROTEIN TRANSPORT PROTEIN SEC23 RELATED; [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [KOG1986] Vesicle coat complex COPII, subunit SEC23; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR11141] PROTEIN TRANSPORT PROTEIN SEC23; [GO:0006888] ER to Golgi vesicle-mediated transport; [PF00626] Gelsolin repeat55.080.7318
26 Mapoly0030s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED; [KOG1164] Casein kinase (serine/threonine/tyrosine protein kinase)55.620.7529
27 Mapoly0048s0072 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [KOG0920] ATP-dependent RNA helicase A; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold56.790.7561
28 Mapoly0029s0081 [PF12752] SUZ domain; [GO:0003676] nucleic acid binding; [PF01424] R3H domain; [PTHR15672] CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN58.690.7006
29 Mapoly0160s0010 [GO:0005524] ATP binding; [KOG0588] Serine/threonine protein kinase; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24343:SF15] CARBON CATABOLITE-DEREPRESSING PROTEIN KINASE; [PF02149] Kinase associated domain 1; [PTHR24343] SERINE/THREONINE KINASE58.740.7377
30 Mapoly0075s0020 [GO:0006396] RNA processing; [PTHR13361:SF1] SUBFAMILY NOT NAMED; [KOG4672] Uncharacterized conserved low complexity protein; [PTHR13361] FAMILY NOT NAMED; [PF09429] WW domain binding protein 1161.970.7130
31 Mapoly0136s0010 [K03028] 26S proteasome regulatory subunit N1; [GO:0000502] proteasome complex; [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [KOG2005] 26S proteasome regulatory complex, subunit RPN1/PSMD2; [PTHR10943:SF1] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 (26S PROTEASOME REGULATORY SUBUNIT RPN1); [GO:0030234] enzyme regulator activity; [PF01851] Proteasome/cyclosome repeat; [GO:0042176] regulation of protein catabolic process62.250.7373
32 Mapoly0002s0327 [K01552] arsenite-transporting ATPase [EC:3.6.3.16]; [KOG0209] P-type ATPase; [GO:0000166] nucleotide binding; [GO:0016021] integral to membrane; [PF00702] haloacid dehalogenase-like hydrolase; [GO:0016887] ATPase activity; [3.6.3.-] Acting on acid anhydrides; catalyzing transmembrane movement of substances.; [GO:0006812] cation transport; [PTHR24093] FAMILY NOT NAMED; [PTHR24093:SF82] ATPASE, P-TYPE, HAD SUPERFAMILY, SUBFAMILY IC, PUTATIVE; [GO:0046872] metal ion binding; [PF00122] E1-E2 ATPase63.940.7383
33 Mapoly0151s0018 [PF00917] MATH domain; [GO:0005515] protein binding; [PTHR24006] FAMILY NOT NAMED67.650.7434
34 Mapoly0004s0114 [PF03097] BRO1-like domain; [K12200] programmed cell death 6-interacting protein; [PTHR23030] PCD6 INTERACTING PROTEIN-RELATED; [KOG2220] Predicted signal transduction protein; [GO:0005515] protein binding; [PF13949] ALIX V-shaped domain binding to HIV; [PTHR23030:SF13] SUBFAMILY NOT NAMED68.370.7021
35 Mapoly0173s0010 [GO:0005524] ATP binding; [PF09262] Peroxisome biogenesis factor 1, N-terminal; [GO:0005777] peroxisome; [PTHR23077:SF12] PEROXISOME BIOGENESIS FACTOR 1 (PEROXIN-1); [GO:0006625] protein targeting to peroxisome; [GO:0005778] peroxisomal membrane; [GO:0007031] peroxisome organization; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23077] AAA-FAMILY ATPASE; [GO:0042623] ATPase activity, coupled; [KOG0735] AAA+-type ATPase; [K13338] peroxin-168.540.6719
36 Mapoly0020s0016 [PTHR13102:SF0] SUBFAMILY NOT NAMED; [PTHR13102] PROTEIN C14ORF21; [KOG2188] Predicted RNA-binding protein, contains Pumilio domains69.200.7511
37 Mapoly0005s0175 [GO:0005515] protein binding; [KOG0293] WD40 repeat-containing protein; [PTHR22838] WD REPEAT PROTEIN 26-RELATED; [PF00400] WD domain, G-beta repeat; [PTHR22838:SF0] SUBFAMILY NOT NAMED69.500.7097
38 Mapoly0031s0124 [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [KOG4462] WASP-interacting protein VRP1/WIP, contains WH2 domain; [PF00400] WD domain, G-beta repeat70.200.7158
39 Mapoly0105s0061 [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)71.730.7452
40 Mapoly0051s0028 [GO:0003723] RNA binding; [PTHR23253] EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA; [PF02854] MIF4G domain; [GO:0005515] protein binding; [PF02020] eIF4-gamma/eIF5/eIF2-epsilon; [KOG2992] Nucleolar GTPase/ATPase p130; [K03260] translation initiation factor eIF-4F; [PF02847] MA3 domain72.470.7386
41 Mapoly0005s0280 [PF01803] LIM-domain binding protein73.200.7236
42 Mapoly0063s0003 [PTHR10241] LETHAL(2) GIANT LARVAE PROTEIN; [GO:0016192] vesicle-mediated transport; [GO:0016021] integral to membrane; [PTHR10241:SF25] SUBFAMILY NOT NAMED; [PF00957] Synaptobrevin; [K08518] syntaxin binding protein 5 (tomosyn); [KOG1983] Tomosyn and related SNARE-interacting proteins73.530.7359
43 Mapoly0003s0296 [GO:0008408] 3'-5' exonuclease activity; [PF01612] 3'-5' exonuclease; [3.1.13.-] Exoribonucleases producing 5'-phosphomonoesters.; [GO:0005622] intracellular; [K12591] exosome complex exonuclease RRP6 [EC:3.1.13.-]; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [PTHR12124] POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; [PF00570] HRDC domain75.260.7411
44 Mapoly0072s0074 [GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [KOG2140] Uncharacterized conserved protein; [PTHR18034] CELL CYCLE CONTROL PROTEIN CWF22-RELATED; [PTHR18034:SF3] CELL CYCLE CONTROL PROTEIN CWF22; [K13100] pre-mRNA-splicing factor CWC22; [PF02847] MA3 domain76.110.7535
45 Mapoly0085s0035 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR23329] TUFTELIN-INTERACTING PROTEIN 11-RELATED; [PF07842] GC-rich sequence DNA-binding factor-like protein; [KOG2184] Tuftelin-interacting protein TIP39, contains G-patch domain; [PF01585] G-patch domain; [PF12457] Tuftelin interacting protein N terminal; [GO:0005634] nucleus; [GO:0003676] nucleic acid binding; [PTHR23329:SF1] TUFTELIN INTERACTING PROTEIN 11; [K13103] tuftelin-interacting protein 1181.670.7379
46 Mapoly0031s0044 [GO:0004222] metalloendopeptidase activity; [GO:0005524] ATP binding; [PF01434] Peptidase family M41; [KOG0734] AAA+-type ATPase containing the peptidase M41 domain; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis84.070.7158
47 Mapoly0080s0038 [PTHR14005:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [KOG2072] Translation initiation factor 3, subunit a (eIF-3a); [PF01399] PCI domain; [PTHR14005] EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT; [K03254] translation initiation factor eIF-3 subunit 10; [GO:0005852] eukaryotic translation initiation factor 3 complex87.120.7242
48 Mapoly0004s0049 [PF13414] TPR repeat; [PF00226] DnaJ domain; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER; [KOG0550] Molecular chaperone (DnaJ superfamily)87.270.7367
49 Mapoly0047s0024 [KOG1142] Transcription initiation factor TFIID, subunit TAF12 (also component of histone acetyltransferase SAGA); [GO:0006352] DNA-dependent transcription, initiation; [PF03847] Transcription initiation factor TFIID subunit A; [PTHR12264] FAMILY NOT NAMED; [K03126] transcription initiation factor TFIID subunit 12; [GO:0005669] transcription factor TFIID complex87.910.7155
50 Mapoly0124s0024 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24056:SF39] CDC2-RELATED PROTEIN KINASE; [KOG0600] Cdc2-related protein kinase; [PTHR24056] CELL DIVISION PROTEIN KINASE88.110.4784
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