Guide Gene

Gene ID
Mapoly0087s0020
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG1781] Small Nuclear ribonucleoprotein splicing factor; [K12626] U6 snRNA-associated Sm-like protein LSm7; [PF01423] LSM domain; [PTHR10553] SMALL NUCLEAR RIBONUCLEOPROTEIN

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0087s0020 [KOG1781] Small Nuclear ribonucleoprotein splicing factor; [K12626] U6 snRNA-associated Sm-like protein LSm7; [PF01423] LSM domain; [PTHR10553] SMALL NUCLEAR RIBONUCLEOPROTEIN 0.00 1.0000
1 Mapoly0082s0039 [PTHR10657] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [KOG3258] Parvulin-like peptidyl-prolyl cis-trans isomerase; [K09579] peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [EC:5.2.1.8]; [GO:0016853] isomerase activity; [5.2.1.8] Peptidylprolyl isomerase.; [PF00639] PPIC-type PPIASE domain1.730.9068
2 Mapoly0028s0141 [GO:0003723] RNA binding; [KOG2523] Predicted RNA-binding protein with PUA domain; [PF01472] PUA domain; [PTHR22798] MCT-1 PROTEIN; [K07575] PUA domain protein3.740.8971
3 Mapoly0014s0113 -4.900.8965
4 Mapoly0092s0041 [K03104] signal recognition particle subunit SRP14; [PF02290] Signal recognition particle 14kD protein; [GO:0008312] 7S RNA binding; [GO:0005786] signal recognition particle, endoplasmic reticulum targeting; [KOG1761] Signal recognition particle, subunit Srp14; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [PTHR12013] SIGNAL RECOGNITION PARTICLE 14 KD PROTEIN; [GO:0030942] endoplasmic reticulum signal peptide binding6.320.8692
5 Mapoly0011s0105 [PTHR21242] TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10; [GO:0006352] DNA-dependent transcription, initiation; [PTHR21242:SF0] TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 10; [K03134] transcription initiation factor TFIID subunit 10; [GO:0005634] nucleus; [PF03540] Transcription initiation factor TFIID 23-30kDa subunit6.710.8235
6 Mapoly0073s0035 [PTHR12828:SF3] PROTEASOME MATURATION PROTEIN (UMP1); [K11599] proteasome maturation protein; [PF05348] Proteasome maturation factor UMP1; [KOG3061] Proteasome maturation factor; [PTHR12828] PROTEASOME MATURATION PROTEIN (UMP1)7.210.8843
7 Mapoly0092s0011 [PF06093] Spt4/RpoE2 zinc finger; [KOG3490] Transcription elongation factor SPT4; [PTHR12882:SF0] SUBFAMILY NOT NAMED; [PTHR12882] SUPPRESSOR OF TY 47.350.8346
8 Mapoly0006s0307 [GO:0019773] proteasome core complex, alpha-subunit complex; [GO:0051603] proteolysis involved in cellular protein catabolic process; [GO:0006511] ubiquitin-dependent protein catabolic process; [GO:0004175] endopeptidase activity; [GO:0004298] threonine-type endopeptidase activity; [K02730] 20S proteasome subunit alpha 1 [EC:3.4.25.1]; [KOG0182] 20S proteasome, regulatory subunit alpha type PSMA6/SCL1; [PF10584] Proteasome subunit A N-terminal signature; [GO:0005839] proteasome core complex; [PTHR11599:SF11] PROTEASOME SUBUNIT ALPHA TYPE 6; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA9.380.8744
9 Mapoly0016s0041 [GO:0051603] proteolysis involved in cellular protein catabolic process; [PTHR11599:SF4] PROTEASOME SUBUNIT BETA TYPE 6,9; [K02738] 20S proteasome subunit beta 1 [EC:3.4.25.1]; [KOG0174] 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3; [GO:0004298] threonine-type endopeptidase activity; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA9.750.8803
10 Mapoly0086s0040 [GO:0046872] metal ion binding; [PF01363] FYVE zinc finger; [PF12796] Ankyrin repeats (3 copies); [PTHR13856] VHS DOMAIN CONTAINING PROTEIN FAMILY10.200.8197
11 Mapoly0041s0007 [GO:0016272] prefoldin complex; [PF02996] Prefoldin subunit; [KOG3048] Molecular chaperone Prefoldin, subunit 5; [GO:0006457] protein folding; [PTHR12674] PREFOLDIN SUBUNIT 5; [GO:0051082] unfolded protein binding; [K04797] prefoldin alpha subunit10.250.8533
12 Mapoly0064s0055 [PF13656] RNA polymerase Rpb3/Rpb11 dimerisation domain; [K03008] DNA-directed RNA polymerase II subunit RPB11; [PTHR13946] DNA-DIRECTED RNA POLYMERASE I,II,III; [KOG4392] RNA polymerase, subunit L10.910.8761
13 Mapoly0161s0025 -11.660.8472
14 Mapoly0006s0079 [K04798] prefoldin beta subunit; [GO:0016272] prefoldin complex; [PTHR21431] PREFOLDIN SUBUNIT 6; [PTHR21431:SF0] SUBFAMILY NOT NAMED; [GO:0006457] protein folding; [KOG3478] Prefoldin subunit 6, KE2 family; [GO:0051082] unfolded protein binding; [PF01920] Prefoldin subunit12.000.8395
15 Mapoly0127s0039 [KOG1774] Small nuclear ribonucleoprotein E; [GO:0005681] spliceosomal complex; [K11097] small nuclear ribonucleoprotein E; [GO:0000398] mRNA splicing, via spliceosome; [PTHR11193] SMALL NUCLEAR RIBONUCLEOPROTEIN E; [PTHR11193:SF0] SMALL NUCLEAR RIBONUCLEOPROTEIN E; [PF01423] LSM domain13.960.8628
16 Mapoly0032s0045 [KOG3392] Exon-exon junction complex, Magoh component; [K12877] protein mago nashi; [GO:0005634] nucleus; [PF02792] Mago nashi protein; [PTHR12638] FAMILY NOT NAMED14.000.8589
17 Mapoly0004s0033 [GO:0019773] proteasome core complex, alpha-subunit complex; [GO:0051603] proteolysis involved in cellular protein catabolic process; [GO:0006511] ubiquitin-dependent protein catabolic process; [PTHR11599:SF16] PROTEASOME SUBUNIT ALPHA TYPE 2; [KOG0181] 20S proteasome, regulatory subunit alpha type PSMA2/PRE8; [GO:0004175] endopeptidase activity; [GO:0004298] threonine-type endopeptidase activity; [PF10584] Proteasome subunit A N-terminal signature; [GO:0005839] proteasome core complex; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [K02726] 20S proteasome subunit alpha 2 [EC:3.4.25.1]; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA14.070.8684
18 Mapoly0115s0039 [KOG1780] Small Nuclear ribonucleoprotein G; [K11099] small nuclear ribonucleoprotein G; [PF01423] LSM domain; [PTHR10553] SMALL NUCLEAR RIBONUCLEOPROTEIN15.300.8786
19 Mapoly0050s0123 [PTHR18901] 2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2; [KOG2914] Predicted haloacid-halidohydrolase and related hydrolases; [PF13419] Haloacid dehalogenase-like hydrolase16.490.8294
20 Mapoly0016s0085 [PTHR15590:SF0] SUBFAMILY NOT NAMED; [PTHR15590] FAMILY NOT NAMED; [PF08991] Domain of unknown function (DUF1903)17.320.8204
21 Mapoly0106s0034 [PTHR12936] ANAPHASE-PROMOTING COMPLEX 10; [KOG3437] Anaphase-promoting complex (APC), subunit 10; [PF03256] Anaphase-promoting complex, subunit 10 (APC10); [K03357] anaphase-promoting complex subunit 1018.570.8111
22 Mapoly0066s0117 [PF01230] HIT domain; [PTHR23089] HISTIDINE TRIAD (HIT) PROTEIN; [KOG3275] Zinc-binding protein of the histidine triad (HIT) family20.000.8528
23 Mapoly0102s0018 [PF06825] Heat shock factor binding protein 1; [KOG4117] Heat shock factor binding protein; [PTHR19424] HEAT SHOCK FACTOR BINDING PROTEIN 120.200.8650
24 Mapoly0166s0021 [PTHR12377] UNCHARACTERIZED; [KOG3381] Uncharacterized conserved protein; [PF01883] Domain of unknown function DUF5921.070.7874
25 Mapoly0044s0041 [K02734] 20S proteasome subunit beta 4 [EC:3.4.25.1]; [GO:0051603] proteolysis involved in cellular protein catabolic process; [PTHR11599:SF6] PROTEASOME SUBUNIT BETA TYPE 2; [GO:0004298] threonine-type endopeptidase activity; [GO:0005839] proteasome core complex; [KOG0177] 20S proteasome, regulatory subunit beta type PSMB2/PRE1; [PF00227] Proteasome subunit; [3.4.25.1] Proteasome endopeptidase complex.; [PTHR11599] PROTEASOME SUBUNIT ALPHA/BETA21.350.8447
26 Mapoly0052s0043 [K11098] small nuclear ribonucleoprotein F; [PTHR11021] SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F); [KOG3482] Small nuclear ribonucleoprotein (snRNP) SMF; [PF01423] LSM domain21.420.8712
27 Mapoly0044s0001 [PF04419] 4F5 protein family; [PTHR13596] SMALL EDRK-RICH FACTOR 122.160.6538
28 Mapoly0015s0046 [PTHR19338] TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG; [KOG1733] Mitochondrial import inner membrane translocase, subunit TIM13; [PF02953] Tim10/DDP family zinc finger24.680.8434
29 Mapoly0072s0064 [PTHR12718] CELL CYCLE CONTROL PROTEIN CWF15; [K12863] protein CWC15; [GO:0005681] spliceosomal complex; [GO:0000398] mRNA splicing, via spliceosome; [PF04889] Cwf15/Cwc15 cell cycle control protein; [KOG3228] Uncharacterized conserved protein24.980.8267
30 Mapoly0005s0214 -26.080.8443
31 Mapoly0033s0133 [PTHR21192] NUCLEAR PROTEIN E3-3; [K09008] hypothetical protein; [PF04430] Protein of unknown function (DUF498/DUF598)27.060.7846
32 Mapoly0010s0009 [PTHR12403] MBP-1 INTERACTING PROTEIN-2A; [PF04628] Sedlin, N-terminal conserved region; [GO:0005622] intracellular; [KOG3444] Uncharacterized conserved protein; [GO:0006888] ER to Golgi vesicle-mediated transport27.390.8317
33 Mapoly0001s0403 [K12832] splicing factor 3B subunit 5; [PF07189] Splicing factor 3B subunit 10 (SF3b10); [PTHR20978:SF0] SUBFAMILY NOT NAMED; [KOG3485] Uncharacterized conserved protein; [PTHR20978] FAMILY NOT NAMED28.140.8239
34 Mapoly0019s0069 [PF06552] Plant specific mitochondrial import receptor subunit TOM20; [PTHR32409] FAMILY NOT NAMED; [GO:0045040] protein import into mitochondrial outer membrane; [GO:0005742] mitochondrial outer membrane translocase complex29.440.8200
35 Mapoly0016s0054 [K12624] U6 snRNA-associated Sm-like protein LSm5; [PTHR20971] U6 SNRNA-ASSOCIATED PROTEIN; [KOG1775] U6 snRNA-associated Sm-like protein; [PF01423] LSM domain30.590.8291
36 Mapoly0026s0093 [GO:0009116] nucleoside metabolic process; [K01244] 5'-methylthioadenosine nucleosidase [EC:3.2.2.16]; [PF01048] Phosphorylase superfamily; [PTHR21234] PURINE NUCLEOSIDE PHOSPHORYLASE; [3.2.2.16] Methylthioadenosine nucleosidase.; [GO:0003824] catalytic activity31.450.8418
37 Mapoly0014s0216 [PF10602] 26S proteasome subunit RPN7; [GO:0005515] protein binding; [K03037] 26S proteasome regulatory subunit N7; [PTHR14145:SF1] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 6; [KOG0687] 26S proteasome regulatory complex, subunit RPN7/PSMD6; [PTHR14145] 26S PROTESOME SUBUNIT 6; [PF01399] PCI domain32.860.8155
38 Mapoly0001s0046 [GO:0016020] membrane; [GO:0009055] electron carrier activity; [KOG3382] NADH:ubiquinone oxidoreductase, B17.2 subunit; [1.6.5.3] NADH:ubiquinone reductase (H(+)-translocating).; [PF05071] NADH ubiquinone oxidoreductase subunit NDUFA12; [1.6.99.3] NADH dehydrogenase.; [GO:0008137] NADH dehydrogenase (ubiquinone) activity; [K11352] NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 12 [EC:1.6.5.3 1.6.99.3]; [PTHR12910] NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.233.200.8335
39 Mapoly0048s0106 -33.820.7897
40 Mapoly0016s0005 [GO:0008565] protein transporter activity; [PTHR11753] CLATHRIN COAT ASSEMBLY PROTEIN; [KOG0934] Clathrin adaptor complex, small subunit; [K12403] AP-4 complex subunit sigma-1; [GO:0015031] protein transport; [PF01217] Clathrin adaptor complex small chain33.880.8254
41 Mapoly0034s0051 [GO:0015035] protein disulfide oxidoreductase activity; [GO:0045454] cell redox homeostasis; [KOG1730] Thioredoxin-like protein; [GO:0006662] glycerol ether metabolic process; [PF06201] PITH domain; [PTHR10438] THIOREDOXIN34.640.8223
42 Mapoly0109s0030 [GO:0016021] integral to membrane; [GO:0004252] serine-type endopeptidase activity; [PF01694] Rhomboid family; [PTHR22936] RHOMBOID-RELATED; [GO:0006508] proteolysis34.990.7771
43 Mapoly0073s0081 [K11876] proteasome assembly chaperone 2; [KOG3112] Uncharacterized conserved protein; [PF09754] PAC2 family; [PTHR12970] TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 (CLAST3)35.500.8104
44 Mapoly0065s0037 [GO:0005840] ribosome; [PTHR12059] RIBOSOMAL PROTEIN L23-RELATED; [GO:0003735] structural constituent of ribosome; [PF00276] Ribosomal protein L23; [PTHR12059:SF5] SUBFAMILY NOT NAMED; [GO:0006412] translation37.820.8180
45 Mapoly0015s0101 [PTHR31134] FAMILY NOT NAMED37.880.8292
46 Mapoly0066s0049 [PTHR12056] DNA-DIRECTED RNA POLYMERASES I, II, AND III; [GO:0003677] DNA binding; [KOG3507] DNA-directed RNA polymerase, subunit RPB7.0; [K03009] DNA-directed RNA polymerases I, II, and III subunit RPABC4; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF03604] DNA directed RNA polymerase, 7 kDa subunit38.880.8340
47 Mapoly0086s0082 [KOG3391] Transcriptional co-repressor component; [PF06487] Sin3 associated polypeptide p18 (SAP18); [K14324] histone deacetylase complex subunit SAP18; [PTHR13082] SAP1838.900.7956
48 Mapoly0011s0077 [PTHR23419:SF0] SUBFAMILY NOT NAMED; [KOG3338] Divalent cation tolerance-related protein; [GO:0010038] response to metal ion; [PF03091] CutA1 divalent ion tolerance protein; [K03926] periplasmic divalent cation tolerance protein; [PTHR23419] DIVALENT CATION TOLERANCE CUTA-RELATED40.690.8085
49 Mapoly0014s0111 [PTHR32001] FAMILY NOT NAMED; [KOG4615] Uncharacterized conserved protein; [PF09775] Keratinocyte-associated protein 241.670.8171
50 Mapoly0058s0033 [PTHR20383] FAMILY NOT NAMED; [KOG2424] Protein involved in transcription start site selection; [GO:0004721] phosphoprotein phosphatase activity; [GO:0006397] mRNA processing; [GO:0005634] nucleus; [PF04722] Ssu72-like protein41.950.7643
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