Guide Gene

Gene ID
Mapoly0064s0021
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0064s0021 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 0.00 1.0000
1 Mapoly0001s0536 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0770] Predicted mitochondrial carrier protein1.410.8942
2 Mapoly0001s0083 [PF08573] DNA repair protein endonuclease SAE2/CtIP C-terminus; [PTHR15107] RETINOBLASTOMA BINDING PROTEIN 84.470.8414
3 Mapoly0116s0031 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family; [PF07721] Tetratricopeptide repeat; [GO:0042802] identical protein binding6.240.8632
4 Mapoly0058s0072 [PF01926] 50S ribosome-binding GTPase; [PTHR11702] DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED; [PF01018] GTP1/OBG; [KOG1489] Predicted GTP-binding protein (ODN superfamily); [GO:0005525] GTP binding; [PTHR11702:SF21] GTP-BINDING PROTEIN6.930.8621
5 Mapoly0008s0196 [KOG2505] Ankyrin repeat protein; [GO:0005515] protein binding; [PTHR16036:SF2] SUBFAMILY NOT NAMED; [PF13606] Ankyrin repeat; [PTHR16036] FAMILY NOT NAMED7.070.8619
6 Mapoly0117s0021 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family9.590.8753
7 Mapoly0059s0089 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR11472:SF1] DNA REPAIR HELICASE RAD3/XP-D; [KOG1131] RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3; [PF06777] Protein of unknown function (DUF1227); [GO:0008026] ATP-dependent helicase activity; [K10844] DNA excision repair protein ERCC-2 [EC:3.6.4.12]; [GO:0016787] hydrolase activity; [PF04851] Type III restriction enzyme, res subunit; [PF13307] Helicase C-terminal domain; [3.6.4.12] DNA helicase.; [PF06733] DEAD_2; [GO:0005634] nucleus; [PTHR11472] DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [GO:0004003] ATP-dependent DNA helicase activity; [GO:0016818] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides11.400.8579
8 Mapoly0019s0108 [PF02033] Ribosome-binding factor A; [GO:0006364] rRNA processing12.120.8588
9 Mapoly0074s0056 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [PF03948] Ribosomal protein L9, C-terminal domain; [PF01281] Ribosomal protein L9, N-terminal domain; [PTHR21368] 50S RIBOSOMAL PROTEIN L9; [GO:0005622] intracellular; [GO:0006412] translation12.450.8322
10 Mapoly0010s0148 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE14.420.8586
11 Mapoly0003s0295 [PF00501] AMP-binding enzyme; [KOG1176] Acyl-CoA synthetase; [PTHR24095:SF52] SUBFAMILY NOT NAMED; [PF13193] AMP-binding enzyme C-terminal domain; [GO:0008152] metabolic process; [PTHR24095] FAMILY NOT NAMED; [GO:0003824] catalytic activity14.590.8099
12 Mapoly0004s0184 [GO:0005515] protein binding; [PF00856] SET domain; [K07117] uncharacterized protein; [PTHR12197] SET AND MYND DOMAIN CONTAINING14.700.8375
13 Mapoly0066s0060 [GO:0005515] protein binding; [GO:0005730] nucleolus; [KOG0310] Conserved WD40 repeat-containing protein; [PF09384] UTP15 C terminal; [GO:0006364] rRNA processing; [K14549] U3 small nucleolar RNA-associated protein 15; [PTHR19924] FAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat15.100.8615
14 Mapoly0001s0055 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family18.970.8419
15 Mapoly0029s0109 [GO:0003723] RNA binding; [PF01926] 50S ribosome-binding GTPase; [KOG1423] Ras-like GTPase ERA; [PTHR11649] MSS1/TRME-RELATED GTP-BINDING PROTEIN; [PF07650] KH domain; [GO:0005525] GTP binding21.000.8582
16 Mapoly0115s0038 [PTHR14614] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN; [PF10294] Putative methyltransferase; [PTHR14614:SF3] UNCHARACTERIZED; [KOG2793] Putative N2,N2-dimethylguanosine tRNA methyltransferase21.490.7740
17 Mapoly0009s0093 [GO:0006289] nucleotide-excision repair; [K03141] transcription initiation factor TFIIH subunit 1; [PF03909] BSD domain; [PTHR12856] TRANSCRIPTION INITIATION FACTOR IIH-RELATED; [GO:0006351] transcription, DNA-dependent; [GO:0000439] core TFIIH complex; [KOG2074] RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB122.200.8348
18 Mapoly0114s0011 [PTHR10848] MEIOTIC RECOMBINATION PROTEIN SPO11; [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K10878] meiotic recombination protein SPO11; [GO:0006259] DNA metabolic process; [PTHR10848:SF0] MEIOTIC RECOMBINATION PROTEIN SPO11; [PF04406] Type IIB DNA topoisomerase; [GO:0000737] DNA catabolic process, endonucleolytic; [GO:0005694] chromosome; [GO:0003824] catalytic activity; [KOG2795] Catalytic subunit of the meiotic double strand break transesterase24.740.8123
19 Mapoly0037s0055 [GO:0016758] transferase activity, transferring hexosyl groups; [K03848] alpha-1,3-glucosyltransferase [EC:2.4.1.-]; [KOG2575] Glucosyltransferase - Alg6p; [PTHR12413] DOLICHYL GLYCOSYLTRANSFERASE; [PF03155] ALG6, ALG8 glycosyltransferase family; [PTHR12413:SF1] DOLICHYL GLYCOSYLTRANSFERASE; [GO:0005789] endoplasmic reticulum membrane; [2.4.1.-] Hexosyltransferases.25.000.8370
20 Mapoly0067s0022 [PTHR12746] NONSENSE-MEDIATED MRNA DECAY PROTEIN 3; [KOG2613] NMD protein affecting ribosome stability and mRNA decay; [PTHR12746:SF2] gb def: Hypothetical protein; [K07562] nonsense-mediated mRNA decay protein 3; [PF04981] NMD3 family25.920.8513
21 Mapoly0137s0034 [PF02676] Methyltransferase TYW3; [PTHR23245] UNCHARACTERIZED; [PF13415] Galactose oxidase, central domain; [KOG1227] Putative methyltransferase; [PF02475] Met-10+ like-protein; [GO:0016740] transferase activity28.250.8471
22 Mapoly0164s0014 [KOG0341] DEAD-box protein abstrakt; [GO:0005524] ATP binding; [K13116] ATP-dependent RNA helicase DDX41 [EC:3.6.4.13]; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF20] SUBFAMILY NOT NAMED28.620.8491
23 Mapoly0001s0181 [PTHR10784] EUKARYOTIC TRANSLATION INITIATION FACTOR 6; [PTHR10784:SF0] EUKARYOTIC TRANSLATION INITIATION FACTOR 6; [K03264] translation initiation factor eIF-6; [GO:0042256] mature ribosome assembly; [GO:0043022] ribosome binding; [KOG3185] Translation initiation factor 6 (eIF-6); [PF01912] eIF-6 family30.300.8421
24 Mapoly0216s0005 [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED30.410.8301
25 Mapoly0008s0195 [PTHR13304] GLYCOSYLPHOSPHATIDYLINOSITOL ANCHOR ATTACHMENT 1 PROTEIN; [PF04114] Gaa1-like, GPI transamidase component; [GO:0016021] integral to membrane; [PTHR13304:SF0] SUBFAMILY NOT NAMED; [GO:0042765] GPI-anchor transamidase complex; [K05289] glycosylphosphatidylinositol transamidase; [KOG3566] Glycosylphosphatidylinositol anchor attachment protein GAA130.590.8271
26 Mapoly0039s0104 [GO:0006396] RNA processing; [3.1.26.5] Ribonuclease P.; [GO:0004526] ribonuclease P activity; [PF06978] Ribonucleases P/MRP protein subunit POP1; [K01164] ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5]; [GO:0001682] tRNA 5'-leader removal; [PTHR22731] RIBONUCLEASE P/MRP SUBUNIT; [PF08170] POPLD (NUC188) domain30.940.8526
27 Mapoly0026s0116 [PTHR16193] UNCHARACTERIZED; [PF13414] TPR repeat; [KOG1128] Uncharacterized conserved protein, contains TPR repeats31.220.8462
28 Mapoly0116s0020 [GO:0005524] ATP binding; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [K01529] dynamin GTPase [EC:3.6.5.5]; [PTHR24031:SF78] SUBFAMILY NOT NAMED; [3.6.1.-] In phosphorous-containing anhydrides.; [KOG0330] ATP-dependent RNA helicase31.750.8432
29 Mapoly0128s0017 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase33.500.8307
30 Mapoly0094s0071 [GO:0016020] membrane; [KOG1563] Mitochondrial protein Surfeit 1/SURF1/SHY1, required for expression of cytochrome oxidase; [PTHR23427:SF2] SURFEIT LOCUS PROTEIN 1; [PTHR23427] SURFEIT LOCUS PROTEIN; [PF02104] SURF1 family34.290.8019
31 Mapoly0133s0004 [GO:0003677] DNA binding; [K03023] DNA-directed RNA polymerase III subunit RPC3; [PF05645] RNA polymerase III subunit RPC82; [KOG2587] RNA polymerase III (C) subunit; [GO:0006351] transcription, DNA-dependent; [PF08221] RNA polymerase III subunit RPC82 helix-turn-helix domain; [GO:0003899] DNA-directed RNA polymerase activity; [PTHR12949] RNA POLYMERASE III (DNA DIRECTED)-RELATED; [2.7.7.6] DNA-directed RNA polymerase.34.700.8355
32 Mapoly0007s0121 [PTHR21027] TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54; [PF12928] tRNA-splicing endonuclease subunit sen54 N-term34.960.8370
33 Mapoly0072s0009 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family35.990.8307
34 Mapoly0010s0199 [GO:0005737] cytoplasm; [PTHR11933] TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE; [PF03054] tRNA methyl transferase; [GO:0008033] tRNA processing; [GO:0016740] transferase activity; [2.8.1.-] Sulfurtransferases.; [K00566] tRNA-specific 2-thiouridylase [EC:2.8.1.-]; [KOG2805] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase36.330.8326
35 Mapoly0031s0152 [PF01545] Cation efflux family; [KOG1484] Putative Zn2+ transporter MSC2 (cation diffusion facilitator superfamily); [GO:0016021] integral to membrane; [GO:0055085] transmembrane transport; [GO:0006812] cation transport; [GO:0008324] cation transmembrane transporter activity; [PTHR11562] CATION EFFLUX PROTEIN/ ZINC TRANSPORTER37.670.8255
36 Mapoly0026s0073 [PTHR22870] REGULATOR OF CHROMOSOME CONDENSATION; [PF00415] Regulator of chromosome condensation (RCC1) repeat38.880.8356
37 Mapoly0065s0011 [PF01963] TraB family; [PTHR21530] PHEROMONE SHUTDOWN PROTEIN39.120.8250
38 Mapoly0001s0547 [PF07258] HCaRG protein; [PTHR31159] FAMILY NOT NAMED39.550.7990
39 Mapoly0107s0037 [GO:0006260] DNA replication; [PF14520] Helix-hairpin-helix domain; [PF01653] NAD-dependent DNA ligase adenylation domain; [PF03119] NAD-dependent DNA ligase C4 zinc finger domain; [PF00533] BRCA1 C Terminus (BRCT) domain; [PF03120] NAD-dependent DNA ligase OB-fold domain; [PF12826] Helix-hairpin-helix motif; [GO:0006281] DNA repair; [PTHR11107] BRCT DOMAIN-CONTAINING PROTEIN; [PTHR11107:SF11] SUBFAMILY NOT NAMED; [GO:0003911] DNA ligase (NAD+) activity40.410.8400
40 Mapoly0015s0117 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0764] Mitochondrial FAD carrier protein; [PTHR24089:SF62] SUBFAMILY NOT NAMED41.290.8187
41 Mapoly0064s0032 [GO:0005515] protein binding; [KOG1063] RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily; [PTHR13729] ELONGATOR COMPLEX PROTEIN 2 (STAT3-INTERACTING PROTEIN); [K11374] elongator complex protein 2; [PTHR13729:SF2] ELONGATOR COMPLEX PROTEIN 2 (STAT3-INTERACTING PROTEIN); [PF00400] WD domain, G-beta repeat41.580.8418
42 Mapoly0041s0094 [3.1.26.5] Ribonuclease P.; [PTHR13031] RIBONUCLEASE P-RELATED; [K03539] ribonuclease P/MRP protein subunit RPP1 [EC:3.1.26.5]; [KOG2363] Protein subunit of nuclear ribonuclease P (RNase P); [GO:0008033] tRNA processing; [PF01876] RNase P subunit p30; [GO:0004540] ribonuclease activity41.820.8318
43 Mapoly0001s0533 [KOG1267] Mitochondrial transcription termination factor, mTERF; [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED41.950.8321
44 Mapoly0090s0009 [PTHR13130] 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED; [PF11571] Mediator complex subunit 2742.070.8160
45 Mapoly0093s0084 [PF12752] SUZ domain; [GO:0003676] nucleic acid binding; [PF01424] R3H domain; [PTHR15672] CAMP-REGULATED PHOSPHOPROTEIN 21 RELATED R3H DOMAIN CONTAINING PROTEIN43.010.8056
46 Mapoly0212s0005 [PTHR19855] WD40 REPEAT PROTEIN 12, 37; [GO:0005515] protein binding; [KOG0313] Microtubule binding protein YTM1 (contains WD40 repeats); [PF08154] NLE (NUC135) domain; [PF00400] WD domain, G-beta repeat43.470.8405
47 Mapoly0033s0014 [PF08772] Nin one binding (NOB1) Zn-ribbon like; [PTHR12814] RNA-BINDING PROTEIN NOB1; [K11883] RNA-binding protein NOB145.990.8229
48 Mapoly0133s0003 [GO:0005524] ATP binding; [PTHR24031:SF91] SUBFAMILY NOT NAMED; [KOG0347] RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding46.200.8402
49 Mapoly0015s0189 [K14289] exportin-5; [PTHR11223:SF3] EXPORTIN 5; [PTHR11223] EXPORTIN 1/5; [PF08389] Exportin 1-like protein46.960.8227
50 Mapoly0043s0013 [KOG0143] Iron/ascorbate family oxidoreductases; [GO:0055114] oxidation-reduction process; [PF14226] non-haem dioxygenase in morphine synthesis N-terminal; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10209] OXIDOREDUCTASE, 2OG-FE(II) OXYGENASE FAMILY PROTEIN; [GO:0016491] oxidoreductase activity; [PF03171] 2OG-Fe(II) oxygenase superfamily47.540.7874
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