Guide Gene

Gene ID
Mapoly0047s0092
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF00899] ThiF family; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [KOG2018] Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis; [GO:0003824] catalytic activity

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0047s0092 [PF00899] ThiF family; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [KOG2018] Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis; [GO:0003824] catalytic activity 0.00 1.0000
1 Mapoly0006s0052 [GO:0003723] RNA binding; [GO:0004523] ribonuclease H activity; [PF01351] Ribonuclease HII; [PTHR10954] RIBONUCLEASE H2 SUBUNIT A; [K10743] ribonuclease H2 subunit A [EC:3.1.26.4]; [3.1.26.4] Ribonuclease H.; [PTHR10954:SF7] RIBONUCLEASE H2 SUBUNIT A; [KOG2299] Ribonuclease HI1.000.8180
2 Mapoly0146s0040 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase4.470.8017
3 Mapoly0107s0007 [PF06839] GRF zinc finger; [4.2.99.18] DNA-(apurinic or apyrimidinic site) lyase.; [K10772] AP endonuclease 2 [EC:4.2.99.18]; [GO:0008270] zinc ion binding; [GO:0006281] DNA repair; [PF03372] Endonuclease/Exonuclease/phosphatase family; [GO:0004518] nuclease activity; [PTHR22748] AP ENDONUCLEASE6.930.7654
4 Mapoly0032s0121 [PTHR22976] BIOTIN SYNTHASE; [PTHR22976:SF4] SUBFAMILY NOT NAMED; [PF04055] Radical SAM superfamily; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding7.750.7558
5 Mapoly0002s0233 [GO:0008168] methyltransferase activity; [KOG2899] Predicted methyltransferase; [PF06859] Bicoid-interacting protein 3 (Bin3); [PTHR12315:SF0] SUBFAMILY NOT NAMED; [PTHR12315] BICOID-INTERACTING PROTEIN RELATED7.940.7647
6 Mapoly0002s0306 [GO:0016763] transferase activity, transferring pentosyl groups; [PF04179] Initiator tRNA phosphoribosyl transferase; [KOG2634] Initiator tRNA phosphoribosyl-transferase; [PTHR31811:SF0] SUBFAMILY NOT NAMED; [PTHR31811] FAMILY NOT NAMED10.950.7616
7 Mapoly0009s0198 [GO:0003723] RNA binding; [PTHR14911] FAMILY NOT NAMED; [PF02926] THUMP domain; [PF01170] Putative RNA methylase family UPF002011.220.7836
8 Mapoly0072s0017 [PF02096] 60Kd inner membrane protein; [KOG1239] Inner membrane protein translocase involved in respiratory chain assembly; [PF14559] Tetratricopeptide repeat; [GO:0016021] integral to membrane; [PTHR12428] OXA1; [GO:0051205] protein insertion into membrane12.650.7195
9 Mapoly0100s0025 [K13175] THO complex subunit 6; [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat; [KOG0649] WD40 repeat protein12.650.7477
10 Mapoly0051s0060 [PTHR31399:SF0] SUBFAMILY NOT NAMED; [PF03121] Herpesviridae UL52/UL70 DNA primase; [GO:0006260] DNA replication; [GO:0003896] DNA primase activity; [PTHR31399] FAMILY NOT NAMED13.750.7834
11 Mapoly0082s0056 [PTHR13211] UNCHARACTERIZED; [GO:0005515] protein binding; [KOG2919] Guanine nucleotide-binding protein; [PF00400] WD domain, G-beta repeat14.280.7591
12 Mapoly0168s0007 [PTHR10252:SF25] SUBFAMILY NOT NAMED; [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [GO:0005622] intracellular; [PTHR10252] HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED14.420.7516
13 Mapoly0033s0023 -14.900.6935
14 Mapoly0060s0110 [PF15072] Domain of unknown function (DUF4539); [PTHR14523] FAMILY NOT NAMED; [PTHR14523:SF1] SUBFAMILY NOT NAMED15.620.7918
15 Mapoly0002s0209 [PF04413] 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); [K02527] 3-deoxy-D-manno-octulosonic-acid transferase [EC:2.-.-.-]; [PTHR23417] 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA (GUANINE-N(7)-)-METHYLTRANSFERASE; [2.-.-.-] Transferases.16.430.7132
16 Mapoly0004s0159 -16.490.7262
17 Mapoly0057s0032 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PTHR22807:SF4] WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN 20; [PF01189] NOL1/NOP2/sun family; [KOG2360] Proliferation-associated nucleolar protein (NOL1)16.790.7950
18 Mapoly0139s0008 [PF14929] TAF RNA Polymerase I subunit A19.970.7474
19 Mapoly0078s0037 [KOG0987] DNA helicase PIF1/RRM3; [PF05970] PIF1-like helicase; [GO:0006281] DNA repair; [PTHR23274] DNA HELICASE-RELATED; [GO:0003678] DNA helicase activity; [GO:0000723] telomere maintenance20.070.7573
20 Mapoly0008s0208 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0005515] protein binding; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [K12736] peptidylprolyl isomerase domain and WD repeat-containing protein 1 [EC:5.2.1.8]; [5.2.1.8] Peptidylprolyl isomerase.; [KOG0882] Cyclophilin-related peptidyl-prolyl cis-trans isomerase; [PF00400] WD domain, G-beta repeat20.170.7597
21 Mapoly0033s0101 [PF15011] Casein Kinase 2 substrate20.490.7347
22 Mapoly0037s0098 [KOG3089] Predicted DEAD-box-containing helicase; [PTHR24030] FAMILY NOT NAMED; [PF14617] U3-containing 90S pre-ribosomal complex subunit21.210.7880
23 Mapoly0049s0091 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain; [KOG0385] Chromatin remodeling complex WSTF-ISWI, small subunit25.100.6710
24 Mapoly0019s0003 [PTHR11079] CYTOSINE DEAMINASE; [GO:0016787] hydrolase activity; [PF00383] Cytidine and deoxycytidylate deaminase zinc-binding region; [GO:0008270] zinc ion binding; [PTHR11079:SF3] CYTIDINE AND DEOXYCYTIDYLATE DEAMINASE ZINC-BINDING REGION25.420.7208
25 Mapoly0069s0083 [K11662] actin-related protein 6; [PF00022] Actin; [PTHR11937:SF21] ACTIN-LIKE PROTEIN; [PTHR11937] ACTIN; [KOG0680] Actin-related protein - Arp6p25.900.7027
26 Mapoly0116s0041 [PF13297] Telomere stability C-terminal; [PTHR12786:SF2] SPLICING FACTOR 3A; [PF12108] Splicing factor SF3a60 binding domain; [KOG2636] Splicing factor 3a, subunit 3; [PTHR12786] SPLICING FACTOR SF3A-RELATED; [K12827] splicing factor 3A subunit 3; [PF11931] Domain of unknown function (DUF3449)37.420.7564
27 Mapoly0101s0047 [KOG2084] Predicted histone tail methylase containing SET domain; [GO:0005515] protein binding; [PF00856] SET domain; [K11426] SET and MYND domain-containing protein; [PTHR12197] SET AND MYND DOMAIN CONTAINING; [PF01753] MYND finger37.970.6376
28 Mapoly0146s0011 [PTHR13387] FAMILY NOT NAMED; [PF04063] Domain of unknown function (DUF383); [KOG2973] Uncharacterized conserved protein; [PF04064] Domain of unknown function (DUF384)38.070.7419
29 Mapoly0121s0036 [GO:0002161] aminoacyl-tRNA editing activity; [PF04073] Aminoacyl-tRNA editing domain; [PTHR30411] UNCHARACTERIZED38.650.6898
30 Mapoly0060s0046 [GO:0006396] RNA processing; [PTHR11246] PRE-MRNA SPLICING FACTOR; [KOG1915] Cell cycle control protein (crooked neck); [GO:0005515] protein binding; [PF13181] Tetratricopeptide repeat; [K12869] crooked neck; [GO:0005622] intracellular; [PF02184] HAT (Half-A-TPR) repeat; [PTHR11246:SF3] CROOKED NECK PROTEIN39.500.7397
31 Mapoly0066s0099 [GO:0005840] ribosome; [PF01165] Ribosomal protein S21; [PTHR21109:SF0] SUBFAMILY NOT NAMED; [PTHR21109] MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21; [GO:0003735] structural constituent of ribosome; [GO:0006412] translation40.250.6902
32 Mapoly0071s0027 [GO:0008168] methyltransferase activity; [PF01795] MraW methylase family; [KOG2782] Putative SAM dependent methyltransferases; [PTHR11265] S-ADENOSYL-METHYLTRANSFERASE MRAW; [PTHR11265:SF0] SUBFAMILY NOT NAMED41.170.6757
33 Mapoly0164s0017 [PTHR12181] LIPIN42.470.6560
34 Mapoly0069s0072 [GO:0005524] ATP binding; [GO:0008026] ATP-dependent helicase activity; [3.6.4.13] RNA helicase.; [PF13307] Helicase C-terminal domain; [PTHR11472] DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [GO:0016818] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; [K11273] chromosome transmission fidelity protein 1 [EC:3.6.4.13]43.010.7396
35 Mapoly0039s0098 [PF13812] Pentatricopeptide repeat domain; [PF01713] Smr domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family43.830.7491
36 Mapoly0052s0057 [PTHR22807] NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PTHR22807:SF16] SUN FAMILY PROTEIN-RELATED; [PF01189] NOL1/NOP2/sun family; [KOG2198] tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily44.730.6957
37 Mapoly0022s0148 [PTHR23245] UNCHARACTERIZED; [PTHR23245:SF25] METHIONINE 10+ HOMOLOG; [PF02475] Met-10+ like-protein; [GO:0016740] transferase activity; [KOG2078] tRNA modification enzyme; [K07055] TatD-related deoxyribonuclease45.600.6290
38 Mapoly0209s0009 [PF04266] ASCH domain47.250.6918
39 Mapoly0226s0007 [PF00817] impB/mucB/samB family; [2.7.7.7] DNA-directed DNA polymerase.; [GO:0006281] DNA repair; [PF11799] impB/mucB/samB family C-terminal domain; [PTHR11076] DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER; [PTHR11076:SF11] DNA POLYMERASE ETA; [GO:0003887] DNA-directed DNA polymerase activity; [GO:0003684] damaged DNA binding; [K03509] DNA polymerase eta subunit [EC:2.7.7.7]50.230.6884
40 Mapoly0066s0041 [GO:0030915] Smc5-Smc6 complex; [PTHR21330] UNCHARACTERIZED; [GO:0019789] SUMO ligase activity; [PF11789] Zinc-finger of the MIZ type in Nse subunit; [GO:0000724] double-strand break repair via homologous recombination51.120.7204
41 Mapoly0045s0079 [PTHR12818:SF0] SUBFAMILY NOT NAMED; [PF01980] Uncharacterised protein family UPF0066; [KOG2942] Uncharacterized conserved protein; [PTHR12818] UNCHARACTERIZED52.500.7374
42 Mapoly0031s0129 [K14561] U3 small nucleolar ribonucleoprotein protein IMP4; [KOG2781] U3 small nucleolar ribonucleoprotein (snoRNP) component; [PTHR22734] U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4; [PF04427] Brix domain54.000.7489
43 Mapoly0131s0021 [PTHR13119] FAMILY NOT NAMED; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [GO:0046872] metal ion binding54.680.6294
44 Mapoly0014s0219 [K03165] DNA topoisomerase III [EC:5.99.1.2]; [GO:0003677] DNA binding; [GO:0003917] DNA topoisomerase type I activity; [PF01751] Toprim domain; [PTHR11390:SF20] DNA TOPOISOMERASE I,III; [GO:0006265] DNA topological change; [GO:0003916] DNA topoisomerase activity; [KOG1957] DNA topoisomerase III beta; [PTHR11390] PROKARYOTIC DNA TOPOISOMERASE; [5.99.1.2] DNA topoisomerase.; [PF01131] DNA topoisomerase58.020.6600
45 Mapoly0013s0140 [K13107] RNA-binding motif protein, X-linked 2; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [PTHR23139] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)58.090.6665
46 Mapoly0005s0264 [PF03725] 3' exoribonuclease family, domain 2; [PTHR11097] EXOSOME COMPLEX EXONUCLEASE (RIBOSOMAL RNA PROCESSING PROTEIN); [KOG1614] Exosomal 3'-5' exoribonuclease complex, subunit Rrp45; [PF01138] 3' exoribonuclease family, domain 158.400.7432
47 Mapoly0006s0010 [PTHR21568] UNCHARACTERIZED; [KOG2364] Predicted pseudouridylate synthase58.580.6869
48 Mapoly0071s0019 [PTHR12176] UNCHARACTERIZED; [PF13847] Methyltransferase domain; [KOG1271] Methyltransferases58.750.7331
49 Mapoly0022s0008 [PTHR22808] NCL1(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING; [PF01189] NOL1/NOP2/sun family; [KOG2198] tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily; [PTHR22808:SF1] PUTATIVE METHYLTRANSFERASE NCL1(YEAST)-RELATED60.250.7296
50 Mapoly0068s0044 [GO:0016787] hydrolase activity; [KOG1592] Asparaginase; [PTHR10188:SF8] THREONINE ASPARTASE 1; [PTHR10188] L-ASPARAGINASE; [PF01112] Asparaginase61.600.7072
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