Guide Gene

Gene ID
Mapoly0044s0032
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR12299] HYALURONIC ACID-BINDING PROTEIN 4; [PF09598] Stm1; [KOG2945] Predicted RNA-binding protein; [PF04774] Hyaluronan / mRNA binding family; [K13199] plasminogen activator inhibitor 1 RNA-binding protein

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0044s0032 [PTHR12299] HYALURONIC ACID-BINDING PROTEIN 4; [PF09598] Stm1; [KOG2945] Predicted RNA-binding protein; [PF04774] Hyaluronan / mRNA binding family; [K13199] plasminogen activator inhibitor 1 RNA-binding protein 0.00 1.0000
1 Mapoly0019s0051 [GO:0003723] RNA binding; [PTHR23270] PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5); [GO:0006397] mRNA processing; [GO:0005634] nucleus; [PF00575] S1 RNA binding domain; [KOG1070] rRNA processing protein Rrp5; [PF05843] Suppressor of forked protein (Suf)1.000.8650
2 Mapoly0067s0081 [GO:0003723] RNA binding; [K13126] polyadenylate-binding protein; [PF00658] Poly-adenylate binding protein, unique domain; [KOG0123] Polyadenylate-binding protein (RRM superfamily); [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)2.450.8326
3 Mapoly0005s0203 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PF00313] 'Cold-shock' DNA-binding domain; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [PTHR11544] COLD SHOCK DOMAIN CONTAINING PROTEINS; [K09250] cellular nucleic acid-binding protein; [GO:0003676] nucleic acid binding; [KOG3070] Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing2.830.8581
4 Mapoly0005s0130 [GO:0042393] histone binding; [PF02182] SAD/SRA domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF13923] Zinc finger, C3HC4 type (RING finger); [PTHR14140] E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED5.000.8116
5 Mapoly0084s0048 [PTHR10516] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [KOG0552] FKBP-type peptidyl-prolyl cis-trans isomerase; [GO:0006457] protein folding; [K01802] peptidylprolyl isomerase [EC:5.2.1.8]; [PF00254] FKBP-type peptidyl-prolyl cis-trans isomerase; [5.2.1.8] Peptidylprolyl isomerase.; [PF03066] Nucleoplasmin5.290.8169
6 Mapoly0108s0028 [GO:0003723] RNA binding; [GO:0003743] translation initiation factor activity; [GO:0031369] translation initiation factor binding; [GO:0003676] nucleic acid binding; [GO:0006413] translational initiation; [K03253] translation initiation factor eIF-3 subunit 9; [PTHR14068:SF0] SUBFAMILY NOT NAMED; [KOG2314] Translation initiation factor 3, subunit b (eIF-3b); [PTHR14068] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 (EIF3)-RELATED; [PF08662] Eukaryotic translation initiation factor eIF2A; [GO:0005852] eukaryotic translation initiation factor 3 complex; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)6.160.7834
7 Mapoly0011s0132 -11.750.8060
8 Mapoly0009s0136 [PTHR24012] FAMILY NOT NAMED; [KOG0126] Predicted RNA-binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)11.830.8001
9 Mapoly0012s0174 [PF00225] Kinesin motor domain; [KOG0239] Kinesin (KAR3 subfamily); [PTHR24115:SF162] PROTEIN F20C5.2B, PARTIALLY CONFIRMED BY TRANSCRIPT EVIDENCE; [GO:0005524] ATP binding; [PF00373] FERM central domain; [PTHR24115] FAMILY NOT NAMED; [GO:0005871] kinesin complex; [PF00784] MyTH4 domain; [GO:0005856] cytoskeleton; [GO:0007018] microtubule-based movement; [PF09379] FERM N-terminal domain; [GO:0008017] microtubule binding; [GO:0003777] microtubule motor activity13.270.7856
10 Mapoly0021s0043 -15.230.8026
11 Mapoly0099s0039 [GO:0033926] glycopeptide alpha-N-acetylgalactosaminidase activity; [PF12899] Alkaline and neutral invertase; [PTHR31916] FAMILY NOT NAMED15.490.7432
12 Mapoly0077s0024 [PTHR21596] RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED17.750.7566
13 Mapoly0031s0122 [PF10151] Uncharacterised conserved protein (DUF2359); [PTHR13448] UNCHARACTERIZED; [KOG4467] Uncharacterized conserved protein17.970.7847
14 Mapoly0005s0256 [PF12220] U1 small nuclear ribonucleoprotein of 70kDa MW N terminal; [KOG0113] U1 small nuclear ribonucleoprotein (RRM superfamily); [PTHR13952:SF5] PREDICTED: HYPOTHETICAL PROTEIN, PARTIAL; [PTHR13952] U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD; [K11093] U1 small nuclear ribonucleoprotein 70kDa; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)19.750.7876
15 Mapoly0056s0041 [K04382] protein phosphatase 2 (formerly 2A), catalytic subunit [EC:3.1.3.16]; [PTHR11668] SERINE/THREONINE PROTEIN PHOSPHATASE; [PF00149] Calcineurin-like phosphoesterase; [GO:0016787] hydrolase activity; [KOG0371] Serine/threonine protein phosphatase 2A, catalytic subunit; [3.1.3.16] Phosphoprotein phosphatase.22.720.7962
16 Mapoly0051s0078 [GO:0006355] regulation of transcription, DNA-dependent; [KOG0266] WD40 repeat-containing protein; [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat23.490.7783
17 Mapoly0014s0155 [PF08321] PPP5 TPR repeat region; [GO:0005737] cytoplasm; [PTHR11668] SERINE/THREONINE PROTEIN PHOSPHATASE; [PF00149] Calcineurin-like phosphoesterase; [GO:0005515] protein binding; [GO:0016787] hydrolase activity; [PF13414] TPR repeat; [GO:0004721] phosphoprotein phosphatase activity; [GO:0006470] protein dephosphorylation; [GO:0005634] nucleus; [PTHR11668:SF12] PROTEIN PHOSPHATASE-5; [PF00515] Tetratricopeptide repeat; [KOG0376] Serine-threonine phosphatase 2A, catalytic subunit; [3.1.3.16] Phosphoprotein phosphatase.; [K04460] protein phosphatase 5 [EC:3.1.3.16]24.660.7663
18 Mapoly0013s0048 [KOG0381] HMG box-containing protein; [PF00505] HMG (high mobility group) box; [PTHR13711] SWI/SNF-RELATED CHROMATIN BINDING PROTEIN25.630.8016
19 Mapoly0012s0162 [GO:0016020] membrane; [PF07933] Protein of unknown function (DUF1681); [KOG2500] Uncharacterized conserved protein; [PTHR12847:SF3] gb def: y110a2ar.3.p [caenorhabditis elegans]; [GO:0006897] endocytosis; [PTHR12847] ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATED25.810.7351
20 Mapoly0141s0015 [PTHR24412] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF01344] Kelch motif25.880.7044
21 Mapoly0001s0474 [PTHR24012] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [K11294] nucleolin; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [KOG0148] Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)26.320.7411
22 Mapoly0028s0110 [GO:0005524] ATP binding; [PTHR23069] TAT-BINDING HOMOLOG 7; [PTHR23069:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [PF00439] Bromodomain; [PF00004] ATPase family associated with various cellular activities (AAA); [KOG0732] AAA+-type ATPase containing the bromodomain26.530.7983
23 Mapoly0083s0034 -26.720.7793
24 Mapoly0002s0249 [GO:0006289] nucleotide-excision repair; [GO:0005515] protein binding; [KOG0011] Nucleotide excision repair factor NEF2, RAD23 component; [PTHR10621] UV EXCISION REPAIR PROTEIN RAD23; [PF09280] XPC-binding domain; [PF00627] UBA/TS-N domain; [PF00240] Ubiquitin family; [GO:0003684] damaged DNA binding; [GO:0043161] proteasomal ubiquitin-dependent protein catabolic process; [K10839] UV excision repair protein RAD2326.830.7624
25 Mapoly0084s0003 [PTHR10792:SF1] 60S RIBOSOMAL PROTEIN L24; [KOG1722] 60s ribosomal protein L24; [K02896] large subunit ribosomal protein L24e; [PF01246] Ribosomal protein L24e; [PTHR10792] 60S RIBOSOMAL PROTEIN L2430.970.8048
26 Mapoly0116s0033 [GO:0005840] ribosome; [PTHR19431] 60S RIBOSOMAL PROTEIN L4; [K02930] large subunit ribosomal protein L4e; [KOG1475] Ribosomal protein RPL1/RPL2/RL4L4; [GO:0003735] structural constituent of ribosome; [PF00573] Ribosomal protein L4/L1 family; [GO:0006412] translation; [PF14374] 60S ribosomal protein L4 C-terminal domain33.230.7024
27 Mapoly0084s0051 [2.1.1.43] Histone-lysine N-methyltransferase.; [GO:0005515] protein binding; [PF00856] SET domain; [KOG1079] Transcriptional repressor EZH1; [PTHR22884] SET DOMAIN PROTEINS; [K11430] enhancer of zeste [EC:2.1.1.43]33.630.7579
28 Mapoly0006s0255 [GO:0003723] RNA binding; [PTHR10288] KH DOMAIN CONTAINING RNA BINDING PROTEIN; [PF00013] KH domain; [KOG2192] PolyC-binding hnRNP-K protein HRB57A/hnRNP, contains KH domain; [K13210] far upstream element-binding protein36.630.7785
29 Mapoly0007s0143 [KOG2235] Uncharacterized conserved protein; [PTHR31057] FAMILY NOT NAMED; [PF09743] Uncharacterized conserved protein (DUF2042); [PTHR31057:SF0] SUBFAMILY NOT NAMED39.910.7446
30 Mapoly0069s0084 [3.6.5.5] Dynamin GTPase.; [KOG0446] Vacuolar sorting protein VPS1, dynamin, and related proteins; [K01528] dynamin GTPase [EC:3.6.5.5]; [PF02212] Dynamin GTPase effector domain; [PF00350] Dynamin family; [PTHR11566] DYNAMIN; [GO:0003924] GTPase activity; [PTHR11566:SF21] SUBFAMILY NOT NAMED; [GO:0005525] GTP binding; [PF01031] Dynamin central region41.020.7499
31 Mapoly0105s0028 [PTHR24012] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)42.580.7619
32 Mapoly0082s0081 [PF05383] La domain; [KOG2590] RNA-binding protein LARP/SRO9 and related La domain proteins; [PTHR22792] LUPUS LA PROTEIN-RELATED43.750.7395
33 Mapoly0011s0083 [PTHR10997] IMPORTIN-7, 8, 1144.830.7683
34 Mapoly0056s0016 [PTHR11359] AMP DEAMINASE; [PF00962] Adenosine/AMP deaminase; [GO:0032264] IMP salvage; [K01490] AMP deaminase [EC:3.5.4.6]; [GO:0019239] deaminase activity; [GO:0003876] AMP deaminase activity; [3.5.4.6] AMP deaminase.; [KOG1096] Adenosine monophosphate deaminase46.800.7355
35 Mapoly0179s0022 [PTHR10857] COPINE; [PF10539] Development and cell death domain47.340.7296
36 Mapoly0037s0030 [GO:0005840] ribosome; [PF03868] Ribosomal protein L6, N-terminal domain; [PTHR10715] 60S RIBOSOMAL PROTEIN L6; [K02934] large subunit ribosomal protein L6e; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PF01159] Ribosomal protein L6e; [GO:0006412] translation; [KOG1694] 60s ribosomal protein L648.060.7914
37 Mapoly0001s0208 [PTHR31431] FAMILY NOT NAMED; [KOG4833] Uncharacterized conserved protein; [K14311] nuclear pore complex protein Nup188; [PF10487] Nucleoporin subcomplex protein binding to Pom3449.130.7631
38 Mapoly0091s0013 [GO:0003723] RNA binding; [KOG2202] U2 snRNP splicing factor, small subunit, and related proteins; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR12620] U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT; [GO:0005634] nucleus; [K12836] splicing factor U2AF 35 kDa subunit; [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [GO:0046872] metal ion binding49.920.7719
39 Mapoly0005s0062 [GO:0005840] ribosome; [PF01158] Ribosomal protein L36e; [GO:0003735] structural constituent of ribosome; [K02920] large subunit ribosomal protein L36e; [GO:0005622] intracellular; [KOG3452] 60S ribosomal protein L36; [PTHR10114] 60S RIBOSOMAL PROTEIN L36; [GO:0006412] translation50.610.7948
40 Mapoly0053s0099 [PF02225] PA domain; [GO:0004252] serine-type endopeptidase activity; [PF00082] Subtilase family; [PF05922] Peptidase inhibitor I9; [GO:0006508] proteolysis; [PTHR10795] PROPROTEIN CONVERTASE SUBTILISIN/KEXIN50.830.7025
41 Mapoly0004s0006 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [KOG0600] Cdc2-related protein kinase; [PTHR24056] CELL DIVISION PROTEIN KINASE51.220.7421
42 Mapoly0043s0120 [K01527] nascent polypeptide-associated complex subunit beta; [PTHR10351] TRANSCRIPTION FACTOR BTF3; [KOG2240] RNA polymerase II general transcription factor BTF3 and related proteins; [PF01849] NAC domain53.830.7842
43 Mapoly0147s0018 [KOG2239] Transcription factor containing NAC and TS-N domains; [PTHR21713] NASCENT POLYPEPTIDE ASSOCIATED COMPLEX ALPHA SUBUNIT-RELATED; [PF01849] NAC domain; [K03626] nascent polypeptide-associated complex subunit alpha55.140.7812
44 Mapoly0040s0140 [K14500] BR-signaling kinase [EC:2.7.11.1]; [KOG1187] Serine/threonine protein kinase; [PF07714] Protein tyrosine kinase; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE57.970.7216
45 Mapoly0036s0153 [PTHR10971:SF5] MITOTIC CHECKPOINT PROTEIN BUB3; [PTHR10971] MRNA EXPORT FACTOR AND BUB3; [GO:0005515] protein binding; [K02180] cell cycle arrest protein BUB3; [KOG1036] Mitotic spindle checkpoint protein BUB3, WD repeat superfamily; [PF00400] WD domain, G-beta repeat58.360.7732
46 Mapoly0035s0068 [GO:0005840] ribosome; [PTHR11830] 40S RIBOSOMAL PROTEIN S3A; [K02984] small subunit ribosomal protein S3Ae; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [KOG1628] 40S ribosomal protein S3A; [PF01015] Ribosomal S3Ae family; [GO:0006412] translation58.740.7784
47 Mapoly0007s0163 [PTHR22055] 28 KDA HEAT- AND ACID-STABLE PHOSPHOPROTEIN (PDGF-ASSOCIATED PROTEIN); [PF10252] Casein kinase substrate phosphoprotein PP28; [KOG3375] Phosphoprotein/predicted coiled-coil protein62.750.7677
48 Mapoly0005s0129 [KOG0466] Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase); [PF00009] Elongation factor Tu GTP binding domain; [PF09173] Initiation factor eIF2 gamma, C terminal; [PTHR23115:SF9] EUKARYOTIC TRANSLATION INITIATION FACTOR 2 GAMMA SUBUNIT (EIF-2- GAMMA); [GO:0003924] GTPase activity; [K03242] translation initiation factor eIF-2 gamma subunit; [PTHR23115] TRANSLATION FACTOR; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 263.500.6834
49 Mapoly0032s0017 [GO:0005524] ATP binding; [GO:0016021] integral to membrane; [PTHR24223] FAMILY NOT NAMED; [PF00664] ABC transporter transmembrane region; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [KOG0054] Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PF00005] ABC transporter64.050.6521
50 Mapoly0062s0108 [GO:0005524] ATP binding; [2.7.11.26] [Tau protein] kinase.; [PF00069] Protein kinase domain; [KOG0658] Glycogen synthase kinase-3; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24057] GLYCOGEN SYNTHASE KINASE-3 ALPHA; [K03083] glycogen synthase kinase 3 beta [EC:2.7.11.26]65.480.7395
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