Guide Gene

Gene ID
Mapoly0039s0093
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [GO:0006260] DNA replication; [PTHR10133] DNA POLYMERASE I; [K02335] DNA polymerase I [EC:2.7.7.7]; [GO:0008408] 3'-5' exonuclease activity; [2.7.7.7] DNA-directed DNA polymerase.; [PF01612] 3'-5' exonuclease; [PF00476] DNA polymerase family A; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [GO:0003887] DNA-directed DNA polymerase activity

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0039s0093 [GO:0003677] DNA binding; [GO:0006260] DNA replication; [PTHR10133] DNA POLYMERASE I; [K02335] DNA polymerase I [EC:2.7.7.7]; [GO:0008408] 3'-5' exonuclease activity; [2.7.7.7] DNA-directed DNA polymerase.; [PF01612] 3'-5' exonuclease; [PF00476] DNA polymerase family A; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [GO:0003887] DNA-directed DNA polymerase activity 0.00 1.0000
1 Mapoly0049s0043 [PTHR15682] FAMILY NOT NAMED; [PF10441] Urb2/Npa2 family4.360.8756
2 Mapoly0054s0075 [PTHR17695] UNCHARACTERIZED; [PTHR17695:SF11] SUBFAMILY NOT NAMED; [PF07539] Down-regulated in metastasis; [KOG1823] DRIM (Down-regulated in metastasis)-like proteins4.690.8747
3 Mapoly0025s0095 [GO:0003677] DNA binding; [GO:0003917] DNA topoisomerase type I activity; [PTHR11390:SF22] DNA TOPOISOMERASE I; [PF01751] Toprim domain; [PF13368] Topoisomerase C-terminal repeat; [GO:0006265] DNA topological change; [KOG1956] DNA topoisomerase III alpha; [PF01396] Topoisomerase DNA binding C4 zinc finger; [GO:0005694] chromosome; [GO:0003916] DNA topoisomerase activity; [PTHR11390] PROKARYOTIC DNA TOPOISOMERASE; [PF01131] DNA topoisomerase4.900.8208
4 Mapoly0040s0120 [PTHR12858] RIBOSOME BIOGENESIS PROTEIN; [KOG1951] GTP-binding protein AARP2 involved in 40S ribosome biogenesis; [GO:0042254] ribosome biogenesis; [PTHR12858:SF2] RIBOSOME BIOGENESIS PROTEIN BMS1; [GO:0005634] nucleus; [PF08142] AARP2CN (NUC121) domain; [K14569] ribosome biogenesis protein BMS1; [PF04950] Protein of unknown function (DUF663)6.240.8709
5 Mapoly0043s0008 [PTHR13457:SF1] gb def: part of small (ribosomal) subunit (ssu) processosome (contains u3 snorna), utp10; [PF12397] U3 small nucleolar RNA-associated protein 10; [PTHR13457] BAP28; [PF08146] BP28CT (NUC211) domain; [K14550] U3 small nucleolar RNA-associated protein 106.930.8684
6 Mapoly0096s0019 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family10.680.7523
7 Mapoly0012s0035 [PTHR14150] U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14; [K14567] U3 small nucleolar RNA-associated protein 14; [PF04615] Utp14 protein; [KOG2172] Uncharacterized conserved protein; [GO:0006364] rRNA processing; [PTHR14150:SF12] U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14; [GO:0032040] small-subunit processome11.490.8599
8 Mapoly0015s0081 [PF11707] Ribosome 60S biogenesis N-terminal; [PTHR13500] NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 111.530.8571
9 Mapoly0009s0044 [GO:0003676] nucleic acid binding; [PTHR24622] FAMILY NOT NAMED; [K14573] nucleolar protein 4; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [KOG0127] Nucleolar protein fibrillarin NOP77 (RRM superfamily)13.040.8642
10 Mapoly0069s0045 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [GO:0003910] DNA ligase (ATP) activity; [PF04679] ATP dependent DNA ligase C terminal region; [PTHR10459] DNA LIGASE; [PF01068] ATP dependent DNA ligase domain; [GO:0006281] DNA repair; [PF12706] Beta-lactamase superfamily domain; [PF04675] DNA ligase N terminus; [PF07522] DNA repair metallo-beta-lactamase; [GO:0006310] DNA recombination; [KOG0967] ATP-dependent DNA ligase I16.120.8025
11 Mapoly0053s0083 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [KOG0262] RNA polymerase I, large subunit; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [K02999] DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [PTHR19376:SF11] DNA-DIRECTED RNA POLYMERASE I LARGEST SUBUNIT16.250.8535
12 Mapoly0075s0033 -17.890.8484
13 Mapoly0051s0017 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376:SF31] OS04G0572600 PROTEIN; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [K03018] DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]; [GO:0032549] ribonucleoside binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [KOG0261] RNA polymerase III, large subunit19.670.8487
14 Mapoly0207s0007 [PTHR14387:SF0] SUBFAMILY NOT NAMED; [PTHR14387] THADA/DEATH RECEPTOR INTERACTING PROTEIN; [PF10350] Putative death-receptor fusion protein (DUF2428)20.200.7469
15 Mapoly0132s0012 [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [PF10458] Valyl tRNA synthetase tRNA binding arm; [KOG0432] Valyl-tRNA synthetase; [6.1.1.9] Valine--tRNA ligase.; [GO:0004832] valine-tRNA ligase activity; [GO:0006438] valyl-tRNA aminoacylation; [K01873] valyl-tRNA synthetase [EC:6.1.1.9]; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PTHR11946:SF5] VALYL-TRNA SYNTHETASE25.500.8188
16 Mapoly0008s0022 -26.930.7894
17 Mapoly0010s0126 [3.1.26.11] Ribonuclease Z.; [PTHR12553] RIBONUCLEASE Z; [K00784] ribonuclease Z [EC:3.1.26.11]; [PF12706] Beta-lactamase superfamily domain27.350.7808
18 Mapoly0151s0007 [GO:0008168] methyltransferase activity; [PTHR10920:SF13] RRNA METHYLTRANSFERASE 3; [PF11861] Domain of unknown function (DUF3381); [GO:0031167] rRNA methylation; [PTHR10920] RIBOSOMAL RNA METHYLTRANSFERASE; [GO:0032259] methylation; [PF01728] FtsJ-like methyltransferase; [KOG1098] Putative SAM-dependent rRNA methyltransferase SPB1; [GO:0005634] nucleus; [GO:0006364] rRNA processing; [PF07780] Spb1 C-terminal domain; [GO:0001510] RNA methylation; [GO:0008649] rRNA methyltransferase activity28.840.7906
19 Mapoly0075s0087 [PTHR31576] FAMILY NOT NAMED29.120.8097
20 Mapoly0013s0047 [KOG2147] Nucleolar protein involved in 40S ribosome biogenesis; [PTHR23183:SF0] SUBFAMILY NOT NAMED; [PTHR23183] NOP14; [PF03715] Noc2p family; [GO:0032040] small-subunit processome; [PF04147] Nop14-like family30.400.8227
21 Mapoly0136s0021 [PTHR13213] DNA POLYMERASE V RELATED; [GO:0003677] DNA binding; [PF04931] DNA polymerase phi; [2.7.7.7] DNA-directed DNA polymerase.; [PTHR13213:SF2] DNA POLYMERASE V; [GO:0006351] transcription, DNA-dependent; [GO:0003887] DNA-directed DNA polymerase activity; [K02331] DNA polymerase phi subunit [EC:2.7.7.7]34.290.8145
22 Mapoly0061s0020 [PTHR21576:SF2] UNCHARACTERIZED NODULIN-LIKE PROTEIN; [PF08161] NUC173 domain; [KOG1248] Uncharacterized conserved protein; [PTHR21576] UNCHARACTERIZED NODULIN-LIKE PROTEIN37.630.7981
23 Mapoly0021s0013 [PTHR19853] WD REPEAT CONTAINING PROTEIN 3 (WDR3); [GO:0005515] protein binding; [PF04003] Dip2/Utp12 Family; [KOG0306] WD40-repeat-containing subunit of the 18S rRNA processing complex; [PTHR19853:SF0] SUBFAMILY NOT NAMED; [K14556] U3 small nucleolar RNA-associated protein 12; [PF00400] WD domain, G-beta repeat39.230.7905
24 Mapoly0084s0039 [GO:0005524] ATP binding; [K07178] RIO kinase 1 [EC:2.7.11.1]; [2.7.11.1] Non-specific serine/threonine protein kinase.; [PF01163] RIO1 family; [GO:0003824] catalytic activity; [PTHR10593] SERINE/THREONINE-PROTEIN KINASE RIO; [KOG2270] Serine/threonine protein kinase involved in cell cycle control41.170.8124
25 Mapoly0001s0039 [PF03914] CBF/Mak21 family; [PTHR12048] CCAAT-BINDING FACTOR-RELATED; [KOG2038] CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein42.210.8094
26 Mapoly0044s0018 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [KOG0926] DEAH-box RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold42.850.8095
27 Mapoly0057s0025 [PTHR11142] PSEUDOURIDYLATE SYNTHASE; [GO:0003723] RNA binding; [K06173] tRNA pseudouridine synthase A [EC:5.4.99.12]; [GO:0001522] pseudouridine synthesis; [KOG2553] Pseudouridylate synthase; [GO:0009451] RNA modification; [PF01416] tRNA pseudouridine synthase; [GO:0009982] pseudouridine synthase activity; [5.4.99.12] tRNA pseudouridine(38-40) synthase.43.870.7938
28 Mapoly0045s0029 [PF13374] Tetratricopeptide repeat; [KOG1840] Kinesin light chain; [PF13424] Tetratricopeptide repeat; [PTHR19959] KINESIN LIGHT CHAIN44.900.7799
29 Mapoly0125s0016 [GO:0005737] cytoplasm; [GO:0009058] biosynthetic process; [K01892] histidyl-tRNA synthetase [EC:6.1.1.21]; [GO:0016841] ammonia-lyase activity; [PF00221] Aromatic amino acid lyase; [PTHR11476:SF1] HISTIDYL-TRNA SYNTHETASE; [PF03129] Anticodon binding domain; [PTHR11476] HISTIDYL-TRNA SYNTHETASE; [PF13393] Histidyl-tRNA synthetase; [KOG1936] Histidyl-tRNA synthetase; [6.1.1.21] Histidine--tRNA ligase.45.090.8047
30 Mapoly0160s0012 [PTHR10357] ALPHA-AMYLASE; [GO:0004553] hydrolase activity, hydrolyzing O-glycosyl compounds; [GO:0005975] carbohydrate metabolic process; [PF02806] Alpha amylase, C-terminal all-beta domain; [GO:0003824] catalytic activity; [KOG0470] 1,4-alpha-glucan branching enzyme/starch branching enzyme II; [GO:0043169] cation binding; [PF00128] Alpha amylase, catalytic domain; [PF02922] Carbohydrate-binding module 48 (Isoamylase N-terminal domain)45.610.7845
31 Mapoly0090s0088 [KOG0338] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [3.6.4.13] RNA helicase.; [K13181] ATP-dependent RNA helicase DDX27 [EC:3.6.4.13]; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF93] PREDICTED PROTEIN (FRAGMENT)46.280.8018
32 Mapoly0003s0296 [GO:0008408] 3'-5' exonuclease activity; [PF01612] 3'-5' exonuclease; [3.1.13.-] Exoribonucleases producing 5'-phosphomonoesters.; [GO:0005622] intracellular; [K12591] exosome complex exonuclease RRP6 [EC:3.1.13.-]; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [PTHR12124] POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; [PF00570] HRDC domain47.230.7998
33 Mapoly0006s0083 [3.4.24.-] Metalloendopeptidases.; [GO:0005524] ATP binding; [GO:0004222] metalloendopeptidase activity; [K03798] cell division protease FtsH [EC:3.4.24.-]; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis53.240.7800
34 Mapoly0004s0090 [GO:0003677] DNA binding; [PF06883] RNA polymerase I, Rpa2 specific domain; [KOG0216] RNA polymerase I, second largest subunit; [PF04565] RNA polymerase Rpb2, domain 3; [PTHR20856] DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2; [PF00562] RNA polymerase Rpb2, domain 6; [K03002] DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]; [GO:0032549] ribonucleoside binding; [GO:0005634] nucleus; [PF04561] RNA polymerase Rpb2, domain 2; [GO:0006351] transcription, DNA-dependent; [PTHR20856:SF5] DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2; [GO:0003899] DNA-directed RNA polymerase activity; [2.7.7.6] DNA-directed RNA polymerase.; [PF04560] RNA polymerase Rpb2, domain 7; [PF04563] RNA polymerase beta subunit57.640.8011
35 Mapoly0216s0004 [PF00817] impB/mucB/samB family; [PF00533] BRCA1 C Terminus (BRCT) domain; [KOG2093] Translesion DNA polymerase - REV1 deoxycytidyl transferase; [K03515] DNA repair protein REV1 [EC:2.7.7.-]; [GO:0006281] DNA repair; [PF11799] impB/mucB/samB family C-terminal domain; [PTHR11076] DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER; [PTHR11076:SF13] TERMINAL DEOXYCYTIDYL TRANSFERASE REV1; [GO:0003887] DNA-directed DNA polymerase activity; [2.7.7.-] Nucleotidyltransferases.; [GO:0003684] damaged DNA binding; [PF11798] IMS family HHH motif60.790.7402
36 Mapoly0032s0003 [PF05178] KRI1-like family; [KOG2409] KRR1-interacting protein involved in 40S ribosome biogenesis; [PTHR14490] ZINC FINGER, ZZ TYPE; [PF12936] KRI1-like family C-terminal61.020.7786
37 Mapoly0126s0034 [GO:0005524] ATP binding; [6.3.5.5] Carbamoyl-phosphate synthase (glutamine-hydrolyzing).; [K01955] carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]; [KOG0370] Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase); [PF00289] Carbamoyl-phosphate synthase L chain, N-terminal domain; [PF02142] MGS-like domain; [GO:0008152] metabolic process; [PTHR11405] CARBAMOYLTRANSFERASE RELATED; [PF02787] Carbamoyl-phosphate synthetase large chain, oligomerisation domain; [GO:0003824] catalytic activity; [PF02786] Carbamoyl-phosphate synthase L chain, ATP binding domain64.060.7444
38 Mapoly0025s0013 [GO:0010468] regulation of gene expression; [GO:0005777] peroxisome; [PTHR14379] LIMKAIN B (LKAP); [PF01936] NYN domain; [PF12872] OST-HTH/LOTUS domain65.570.7613
39 Mapoly0165s0012 [PF08640] U3 small nucleolar RNA-associated protein 6; [KOG2396] HAT (Half-A-TPR) repeat-containing protein; [K14557] U3 small nucleolar RNA-associated protein 6; [PTHR23271] HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 6666.500.7825
40 Mapoly0076s0060 [PTHR12389] ZINC FINGER PROTEIN 294; [PF11793] FANCL C-terminal domain67.040.7862
41 Mapoly0060s0020 [K14544] U3 small nucleolar RNA-associated protein 22; [KOG2054] Nucleolar RNA-associated protein (NRAP); [PTHR17972] NUCLEOLAR RNA-ASSOCIATED PROTEIN; [PF03813] Nrap protein68.410.7763
42 Mapoly0133s0002 [KOG2441] mRNA splicing factor/probable chromatin binding snw family nuclear protein; [GO:0005681] spliceosomal complex; [GO:0000398] mRNA splicing, via spliceosome; [K06063] SNW domain-containing protein 1; [PTHR12096] NUCLEAR PROTEIN SKIP-RELATED; [PF02731] SKIP/SNW domain69.610.7612
43 Mapoly1100s0003 [GO:0005524] ATP binding; [PTHR10046:SF23] LON PROTEASE HOMOLOG, MITOCHONDRIAL; [GO:0004176] ATP-dependent peptidase activity; [GO:0004252] serine-type endopeptidase activity; [PF02190] ATP-dependent protease La (LON) domain; [GO:0030163] protein catabolic process; [PTHR10046] ATP DEPENDENT LON PROTEASE FAMILY MEMBER; [GO:0006508] proteolysis70.930.7105
44 Mapoly0035s0137 [GO:0005643] nuclear pore; [PTHR10350:SF6] NUCLEOPORIN 155; [PF03177] Non-repetitive/WGA-negative nucleoporin C-terminal; [K14312] nuclear pore complex protein Nup155; [KOG1900] Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170); [GO:0006913] nucleocytoplasmic transport; [PF08801] Nup133 N terminal like; [GO:0017056] structural constituent of nuclear pore; [PTHR10350] NUCLEAR PORE COMPLEX PROTEIN NUP15571.230.7730
45 Mapoly0170s0020 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [GO:0005681] spliceosomal complex; [PTHR10887:SF5] INTRON-BINDING PROTEIN AQUARIUS; [PF13086] AAA domain; [GO:0000398] mRNA splicing, via spliceosome; [K12874] intron-binding protein aquarius; [PF13087] AAA domain; [KOG1806] DEAD box containing helicases73.320.7900
46 Mapoly0156s0021 [GO:0005515] protein binding; [PTHR22847] WD40 REPEAT PROTEIN; [KOG1963] WD40 repeat protein; [PF00400] WD domain, G-beta repeat73.480.7871
47 Mapoly0047s0031 [K01952] phosphoribosylformylglycinamidine synthase [EC:6.3.5.3]; [PTHR10099] PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE; [PF02769] AIR synthase related protein, C-terminal domain; [PF13507] CobB/CobQ-like glutamine amidotransferase domain; [PF00586] AIR synthase related protein, N-terminal domain; [KOG1907] Phosphoribosylformylglycinamidine synthase; [GO:0003824] catalytic activity; [PTHR10099:SF1] TEGUMENT PROTEIN; [6.3.5.3] Phosphoribosylformylglycinamidine synthase.75.050.7716
48 Mapoly0064s0104 [PF13355] Protein of unknown function (DUF4101)76.040.7246
49 Mapoly0004s0060 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0006511] ubiquitin-dependent protein catabolic process; [K11855] ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.1.2.15]; [KOG1865] Ubiquitin carboxyl-terminal hydrolase; [PTHR24006] FAMILY NOT NAMED77.150.7497
50 Mapoly0013s0059 [GO:0005515] protein binding; [PF02213] GYF domain; [PTHR14445] GRB10 INTERACTING GYF PROTEIN77.410.7530
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