Guide Gene
- Gene ID
- Mapoly0025s0095
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [GO:0003677] DNA binding; [GO:0003917] DNA topoisomerase type I activity; [PTHR11390:SF22] DNA TOPOISOMERASE I; [PF01751] Toprim domain; [PF13368] Topoisomerase C-terminal repeat; [GO:0006265] DNA topological change; [KOG1956] DNA topoisomerase III alpha; [PF01396] Topoisomerase DNA binding C4 zinc finger; [GO:0005694] chromosome; [GO:0003916] DNA topoisomerase activity; [PTHR11390] PROKARYOTIC DNA TOPOISOMERASE; [PF01131] DNA topoisomerase
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0025s0095 [GO:0003677] DNA binding; [GO:0003917] DNA topoisomerase type I activity; [PTHR11390:SF22] DNA TOPOISOMERASE I; [PF01751] Toprim domain; [PF13368] Topoisomerase C-terminal repeat; [GO:0006265] DNA topological change; [KOG1956] DNA topoisomerase III alpha; [PF01396] Topoisomerase DNA binding C4 zinc finger; [GO:0005694] chromosome; [GO:0003916] DNA topoisomerase activity; [PTHR11390] PROKARYOTIC DNA TOPOISOMERASE; [PF01131] DNA topoisomerase 0.00 1.0000 1 Mapoly0039s0093 [GO:0003677] DNA binding; [GO:0006260] DNA replication; [PTHR10133] DNA POLYMERASE I; [K02335] DNA polymerase I [EC:2.7.7.7]; [GO:0008408] 3'-5' exonuclease activity; [2.7.7.7] DNA-directed DNA polymerase.; [PF01612] 3'-5' exonuclease; [PF00476] DNA polymerase family A; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [GO:0003887] DNA-directed DNA polymerase activity 4.90 0.8208 2 Mapoly0069s0045 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [GO:0003910] DNA ligase (ATP) activity; [PF04679] ATP dependent DNA ligase C terminal region; [PTHR10459] DNA LIGASE; [PF01068] ATP dependent DNA ligase domain; [GO:0006281] DNA repair; [PF12706] Beta-lactamase superfamily domain; [PF04675] DNA ligase N terminus; [PF07522] DNA repair metallo-beta-lactamase; [GO:0006310] DNA recombination; [KOG0967] ATP-dependent DNA ligase I 6.32 0.8174 3 Mapoly0049s0043 [PTHR15682] FAMILY NOT NAMED; [PF10441] Urb2/Npa2 family 6.78 0.8344 4 Mapoly0013s0059 [GO:0005515] protein binding; [PF02213] GYF domain; [PTHR14445] GRB10 INTERACTING GYF PROTEIN 8.66 0.8203 5 Mapoly0075s0087 [PTHR31576] FAMILY NOT NAMED 12.81 0.8185 6 Mapoly0043s0050 [PTHR23019:SF0] SUBFAMILY NOT NAMED; [K14314] nuclear pore complex protein Nup210; [PF02368] Bacterial Ig-like domain (group 2); [PTHR23019] NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED; [KOG1833] Nuclear pore complex, gp210 component 13.04 0.8043 7 Mapoly0015s0081 [PF11707] Ribosome 60S biogenesis N-terminal; [PTHR13500] NUCLEOLAR PRERIBOSOMAL-ASSOCIATED PROTEIN 1 20.83 0.8118 8 Mapoly0054s0075 [PTHR17695] UNCHARACTERIZED; [PTHR17695:SF11] SUBFAMILY NOT NAMED; [PF07539] Down-regulated in metastasis; [KOG1823] DRIM (Down-regulated in metastasis)-like proteins 21.17 0.8111 9 Mapoly0053s0083 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [KOG0262] RNA polymerase I, large subunit; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [K02999] DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [PTHR19376:SF11] DNA-DIRECTED RNA POLYMERASE I LARGEST SUBUNIT 21.77 0.8160 10 Mapoly0014s0219 [K03165] DNA topoisomerase III [EC:5.99.1.2]; [GO:0003677] DNA binding; [GO:0003917] DNA topoisomerase type I activity; [PF01751] Toprim domain; [PTHR11390:SF20] DNA TOPOISOMERASE I,III; [GO:0006265] DNA topological change; [GO:0003916] DNA topoisomerase activity; [KOG1957] DNA topoisomerase III beta; [PTHR11390] PROKARYOTIC DNA TOPOISOMERASE; [5.99.1.2] DNA topoisomerase.; [PF01131] DNA topoisomerase 23.11 0.6976 11 Mapoly0023s0084 [PTHR16056:SF2] TESTIS EXPRESSED GENE 10-RELATED; [PTHR16056] UNCHARACTERIZED; [PF12333] Rix1 complex component involved in 60S ribosome maturation 23.32 0.7728 12 Mapoly0061s0009 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23.37 0.7367 13 Mapoly0008s0022 - 24.37 0.7726 14 Mapoly0020s0127 [GO:0005515] protein binding; [PTHR14344] WD REPEAT PROTEIN; [KOG0974] WD-repeat protein WDR6, WD repeat superfamily; [PF00400] WD domain, G-beta repeat 25.92 0.7580 15 Mapoly0105s0052 [PTHR32387] FAMILY NOT NAMED; [PF13020] Domain of unknown function (DUF3883); [PTHR32387:SF0] SUBFAMILY NOT NAMED 26.15 0.7262 16 Mapoly0048s0059 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [PF13086] AAA domain; [PF13087] AAA domain 28.67 0.6719 17 Mapoly0059s0080 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 28.77 0.7405 18 Mapoly0052s0095 [GO:0005643] nuclear pore; [PTHR31344:SF0] SUBFAMILY NOT NAMED; [K14310] nuclear pore complex protein Nup205; [PF11894] Protein of unknown function (DUF3414); [PTHR31344] FAMILY NOT NAMED; [KOG1835] Uncharacterized conserved protein 30.03 0.7616 19 Mapoly0051s0017 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376:SF31] OS04G0572600 PROTEIN; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [K03018] DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]; [GO:0032549] ribonucleoside binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [KOG0261] RNA polymerase III, large subunit 30.59 0.8104 20 Mapoly0075s0033 - 32.16 0.8001 21 Mapoly0012s0035 [PTHR14150] U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14; [K14567] U3 small nucleolar RNA-associated protein 14; [PF04615] Utp14 protein; [KOG2172] Uncharacterized conserved protein; [GO:0006364] rRNA processing; [PTHR14150:SF12] U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 14; [GO:0032040] small-subunit processome 33.05 0.7930 22 Mapoly0040s0120 [PTHR12858] RIBOSOME BIOGENESIS PROTEIN; [KOG1951] GTP-binding protein AARP2 involved in 40S ribosome biogenesis; [GO:0042254] ribosome biogenesis; [PTHR12858:SF2] RIBOSOME BIOGENESIS PROTEIN BMS1; [GO:0005634] nucleus; [PF08142] AARP2CN (NUC121) domain; [K14569] ribosome biogenesis protein BMS1; [PF04950] Protein of unknown function (DUF663) 33.26 0.7818 23 Mapoly0057s0097 [PF13513] HEAT-like repeat; [PF03810] Importin-beta N-terminal domain; [GO:0005515] protein binding; [PTHR10527:SF3] TRANSPORTIN-1 (IMPORTIN BETA-2)(KARYOPHERIN BETA-2); [KOG2023] Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily); [PF02985] HEAT repeat; [GO:0006886] intracellular protein transport; [GO:0008536] Ran GTPase binding; [PTHR10527] IMPORTIN BETA 33.59 0.7330 24 Mapoly0009s0044 [GO:0003676] nucleic acid binding; [PTHR24622] FAMILY NOT NAMED; [K14573] nucleolar protein 4; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); [KOG0127] Nucleolar protein fibrillarin NOP77 (RRM superfamily) 36.33 0.7934 25 Mapoly0056s0018 [GO:0004222] metalloendopeptidase activity; [GO:0005524] ATP binding; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis 40.79 0.7476 26 Mapoly0160s0012 [PTHR10357] ALPHA-AMYLASE; [GO:0004553] hydrolase activity, hydrolyzing O-glycosyl compounds; [GO:0005975] carbohydrate metabolic process; [PF02806] Alpha amylase, C-terminal all-beta domain; [GO:0003824] catalytic activity; [KOG0470] 1,4-alpha-glucan branching enzyme/starch branching enzyme II; [GO:0043169] cation binding; [PF00128] Alpha amylase, catalytic domain; [PF02922] Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 42.49 0.7671 27 Mapoly0132s0012 [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [PF10458] Valyl tRNA synthetase tRNA binding arm; [KOG0432] Valyl-tRNA synthetase; [6.1.1.9] Valine--tRNA ligase.; [GO:0004832] valine-tRNA ligase activity; [GO:0006438] valyl-tRNA aminoacylation; [K01873] valyl-tRNA synthetase [EC:6.1.1.9]; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PTHR11946:SF5] VALYL-TRNA SYNTHETASE 43.45 0.7737 28 Mapoly0003s0232 [PF04815] Sec23/Sec24 helical domain; [K14006] protein transport protein SEC23; [GO:0008270] zinc ion binding; [PTHR11141:SF2] PROTEIN TRANSPORT PROTEIN SEC23 RELATED; [PF08033] Sec23/Sec24 beta-sandwich domain; [PF04811] Sec23/Sec24 trunk domain; [GO:0006886] intracellular protein transport; [KOG1986] Vesicle coat complex COPII, subunit SEC23; [PF04810] Sec23/Sec24 zinc finger; [GO:0030127] COPII vesicle coat; [PTHR11141] PROTEIN TRANSPORT PROTEIN SEC23; [GO:0006888] ER to Golgi vesicle-mediated transport; [PF00626] Gelsolin repeat 44.41 0.7448 29 Mapoly0006s0098 [GO:0003723] RNA binding; [KOG1990] Poly(A)-specific exoribonuclease PARN; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED 44.47 0.7362 30 Mapoly0072s0083 [PTHR13808] CBP/P300-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF00569] Zinc finger, ZZ type; [PF02135] TAZ zinc finger; [GO:0003712] transcription cofactor activity; [GO:0008270] zinc ion binding; [PF08214] Histone acetylation protein; [GO:0005634] nucleus; [GO:0004402] histone acetyltransferase activity; [K04498] E1A/CREB-binding protein [EC:2.3.1.48]; [2.3.1.48] Histone acetyltransferase.; [KOG1778] CREB binding protein/P300 and related TAZ Zn-finger proteins 46.31 0.7803 31 Mapoly0043s0008 [PTHR13457:SF1] gb def: part of small (ribosomal) subunit (ssu) processosome (contains u3 snorna), utp10; [PF12397] U3 small nucleolar RNA-associated protein 10; [PTHR13457] BAP28; [PF08146] BP28CT (NUC211) domain; [K14550] U3 small nucleolar RNA-associated protein 10 48.37 0.7648 32 Mapoly0080s0038 [PTHR14005:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [KOG2072] Translation initiation factor 3, subunit a (eIF-3a); [PF01399] PCI domain; [PTHR14005] EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT; [K03254] translation initiation factor eIF-3 subunit 10; [GO:0005852] eukaryotic translation initiation factor 3 complex 48.91 0.7548 33 Mapoly0038s0059 [GO:0003677] DNA binding; [PF13513] HEAT-like repeat; [GO:0005524] ATP binding; [GO:0005515] protein binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain; [PF12054] Domain of unknown function (DUF3535); [PF02985] HEAT repeat; [KOG0392] SNF2 family DNA-dependent ATPase domain-containing protein; [PTHR10799:SF225] TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172 55.18 0.7524 34 Mapoly0006s0083 [3.4.24.-] Metalloendopeptidases.; [GO:0005524] ATP binding; [GO:0004222] metalloendopeptidase activity; [K03798] cell division protease FtsH [EC:3.4.24.-]; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis 55.50 0.7527 35 Mapoly0019s0008 [GO:0003723] RNA binding; [PF10596] U6-snRNA interacting domain of PrP8; [PF08083] PROCN (NUC071) domain; [GO:0005515] protein binding; [GO:0005681] spliceosomal complex; [PTHR11140] PRE-MRNA SPLICING FACTOR PRP8; [PTHR11140:SF0] SUBFAMILY NOT NAMED; [PF01398] JAB1/Mov34/MPN/PAD-1 ubiquitin protease; [GO:0030623] U5 snRNA binding; [PF10597] U5-snRNA binding site 2 of PrP8; [KOG1795] U5 snRNP spliceosome subunit; [GO:0000398] mRNA splicing, via spliceosome; [PF12134] PRP8 domain IV core; [PF10598] RNA recognition motif of the spliceosomal PrP8; [K12856] pre-mRNA-processing factor 8; [GO:0017070] U6 snRNA binding; [PF08082] PRO8NT (NUC069), PrP8 N-terminal domain; [PF08084] PROCT (NUC072) domain 55.81 0.7436 36 Mapoly0036s0119 [PF14500] Dos2-interacting transcription regulator of RNA-Pol-II; [PF12460] RNAPII transcription regulator C-terminal; [PTHR12891] DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 59.22 0.7641 37 Mapoly0031s0153 [2.3.1.-] Transferring groups other than amino-acyl groups.; [PTHR10925] N-ACETYLTRANSFERASE 10; [GO:0008080] N-acetyltransferase activity; [K14521] N-acetyltransferase 10 [EC:2.3.1.-]; [PF13725] Possible tRNA binding domain; [PF13718] GNAT acetyltransferase 2; [PF05127] Helicase; [PF08351] Domain of unknown function (DUF1726); [KOG2036] Predicted P-loop ATPase fused to an acetyltransferase 61.60 0.7615 38 Mapoly0062s0116 [K11789] HIV-1 Vpr-binding protein; [PTHR13129] VPRBP PROTEIN-RELATED; [KOG1832] HIV-1 Vpr-binding protein; [PTHR13129:SF4] SUBFAMILY NOT NAMED 62.50 0.7495 39 Mapoly0022s0121 - 64.48 0.7547 40 Mapoly0156s0022 [PTHR11226] UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE; [GO:0006486] protein glycosylation; [PF06427] UDP-glucose:Glycoprotein Glucosyltransferase; [K11718] UDP-glucose:glycoprotein glucosyltransferase [EC:2.4.1.-]; [GO:0003980] UDP-glucose:glycoprotein glucosyltransferase activity; [PTHR11226:SF0] SUBFAMILY NOT NAMED; [KOG1879] UDP-glucose:glycoprotein glucosyltransferase; [2.4.1.-] Hexosyltransferases. 65.31 0.7046 41 Mapoly0001s0556 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 65.38 0.6559 42 Mapoly0216s0004 [PF00817] impB/mucB/samB family; [PF00533] BRCA1 C Terminus (BRCT) domain; [KOG2093] Translesion DNA polymerase - REV1 deoxycytidyl transferase; [K03515] DNA repair protein REV1 [EC:2.7.7.-]; [GO:0006281] DNA repair; [PF11799] impB/mucB/samB family C-terminal domain; [PTHR11076] DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER; [PTHR11076:SF13] TERMINAL DEOXYCYTIDYL TRANSFERASE REV1; [GO:0003887] DNA-directed DNA polymerase activity; [2.7.7.-] Nucleotidyltransferases.; [GO:0003684] damaged DNA binding; [PF11798] IMS family HHH motif 70.10 0.7225 43 Mapoly0125s0017 [PTHR31515] FAMILY NOT NAMED 70.48 0.5883 44 Mapoly0033s0024 [GO:0005524] ATP binding; [K14572] midasin; [PF07728] AAA domain (dynein-related subfamily); [GO:0016887] ATPase activity; [KOG1808] AAA ATPase containing von Willebrand factor type A (vWA) domain; [PTHR22908] MIDASIN-RELATED 72.46 0.7128 45 Mapoly0002s0142 - 72.55 0.7270 46 Mapoly0001s0116 [KOG0620] Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins; [PF03372] Endonuclease/Exonuclease/phosphatase family; [K12603] CCR4-NOT transcription complex subunit 6 [EC:3.1.-.-]; [3.1.-.-] Acting on ester bonds.; [PTHR12121] CARBON CATABOLITE REPRESSOR PROTEIN 4 72.89 0.6278 47 Mapoly0151s0007 [GO:0008168] methyltransferase activity; [PTHR10920:SF13] RRNA METHYLTRANSFERASE 3; [PF11861] Domain of unknown function (DUF3381); [GO:0031167] rRNA methylation; [PTHR10920] RIBOSOMAL RNA METHYLTRANSFERASE; [GO:0032259] methylation; [PF01728] FtsJ-like methyltransferase; [KOG1098] Putative SAM-dependent rRNA methyltransferase SPB1; [GO:0005634] nucleus; [GO:0006364] rRNA processing; [PF07780] Spb1 C-terminal domain; [GO:0001510] RNA methylation; [GO:0008649] rRNA methyltransferase activity 75.66 0.7295 48 Mapoly0089s0002 [PF12850] Calcineurin-like phosphoesterase superfamily domain; [PF02463] RecF/RecN/SMC N terminal domain; [PTHR32114] FAMILY NOT NAMED; [GO:0006281] DNA repair; [GO:0004518] nuclease activity 75.98 0.6286 49 Mapoly0207s0007 [PTHR14387:SF0] SUBFAMILY NOT NAMED; [PTHR14387] THADA/DEATH RECEPTOR INTERACTING PROTEIN; [PF10350] Putative death-receptor fusion protein (DUF2428) 76.35 0.6864 50 Mapoly0045s0029 [PF13374] Tetratricopeptide repeat; [KOG1840] Kinesin light chain; [PF13424] Tetratricopeptide repeat; [PTHR19959] KINESIN LIGHT CHAIN 76.50 0.7352