Guide Gene

Gene ID
Mapoly0035s0045
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0005524] ATP binding; [KOG0332] ATP-dependent RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [K01529] dynamin GTPase [EC:3.6.5.5]; [3.6.1.-] In phosphorous-containing anhydrides.

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0035s0045 [GO:0005524] ATP binding; [KOG0332] ATP-dependent RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [K01529] dynamin GTPase [EC:3.6.5.5]; [3.6.1.-] In phosphorous-containing anhydrides. 0.00 1.0000
1 Mapoly0126s0032 -1.000.8294
2 Mapoly0153s0017 [PTHR12860] SIGNAL RECOGNITION PARTICLE 68 KDA PROTEIN; [KOG2460] Signal recognition particle, subunit Srp68; [K03107] signal recognition particle subunit SRP681.410.8191
3 Mapoly0005s0074 [GO:0000287] magnesium ion binding; [PTHR11902] ENOLASE; [PF03952] Enolase, N-terminal domain; [GO:0004634] phosphopyruvate hydratase activity; [GO:0006096] glycolysis; [PF00113] Enolase, C-terminal TIM barrel domain; [4.2.1.11] Phosphopyruvate hydratase.; [GO:0000015] phosphopyruvate hydratase complex; [K01689] enolase [EC:4.2.1.11]; [KOG2670] Enolase3.160.8141
4 Mapoly0157s0018 [GO:0000287] magnesium ion binding; [GO:0005737] cytoplasm; [PTHR21403:SF1] ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE); [GO:0000105] histidine biosynthetic process; [K00765] ATP phosphoribosyltransferase [EC:2.4.2.17]; [PF01634] ATP phosphoribosyltransferase; [PF08029] HisG, C-terminal domain; [GO:0003879] ATP phosphoribosyltransferase activity; [2.4.2.17] ATP phosphoribosyltransferase.; [KOG2831] ATP phosphoribosyltransferase; [PTHR21403] ATP PHOSPHORIBOSYLTRANSFERASE (ATP-PRTASE)4.580.8147
5 Mapoly0100s0024 [KOG1763] Uncharacterized conserved protein, contains CCCH-type Zn-finger; [PTHR12681] ZINC FINGER-CONTAINING PROTEIN P48ZNF4.900.7817
6 Mapoly0038s0048 [GO:0005737] cytoplasm; [PF08597] Translation initiation factor eIF3 subunit; [GO:0003743] translation initiation factor activity; [K03245] translation initiation factor eIF-3 subunit 1; [PTHR21681] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 1; [GO:0005852] eukaryotic translation initiation factor 3 complex; [KOG4813] Translation initiation factor eIF3, p35 subunit6.000.7778
7 Mapoly0134s0022 [PF01926] 50S ribosome-binding GTPase; [KOG1491] Predicted GTP-binding protein (ODN superfamily); [PF06071] Protein of unknown function (DUF933); [K06942] ribosomal RNA large subunit methyltransferase N [EC:2.1.1.-]; [PTHR23305] GTP-BINDING PROTEIN-RELATED; [GO:0005525] GTP binding8.370.7987
8 Mapoly0011s0194 [PF02897] Prolyl oligopeptidase, N-terminal beta-propeller domain; [GO:0008236] serine-type peptidase activity; [PTHR11757:SF3] OLIGOPEPTIDASE B (LYSYL AND ARGININYL OLIGOPEPTIDASE); [3.4.21.83] Oligopeptidase B.; [GO:0070008] serine-type exopeptidase activity; [K01354] oligopeptidase B [EC:3.4.21.83]; [GO:0004252] serine-type endopeptidase activity; [GO:0006508] proteolysis; [PTHR11757] PROTEASE FAMILY S9A OLIGOPEPTIDASE; [PF00326] Prolyl oligopeptidase family; [KOG2237] Predicted serine protease9.170.7735
9 Mapoly0090s0010 [K04567] lysyl-tRNA synthetase, class II [EC:6.1.1.6]; [GO:0005524] ATP binding; [PTHR22594:SF4] LYSYL-TRNA SYNTHETASE; [6.1.1.6] Lysine--tRNA ligase.; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [KOG1885] Lysyl-tRNA synthetase (class II); [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)10.000.8147
10 Mapoly0067s0015 [PTHR13271] UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE; [GO:0005515] protein binding; [PF00856] SET domain; [PF09273] Rubisco LSMT substrate-binding11.660.7640
11 Mapoly0001s0386 [GO:0000287] magnesium ion binding; [KOG0786] 3-isopropylmalate dehydrogenase; [1.1.1.85] 3-isopropylmalate dehydrogenase.; [GO:0055114] oxidation-reduction process; [PF00180] Isocitrate/isopropylmalate dehydrogenase; [K00052] 3-isopropylmalate dehydrogenase [EC:1.1.1.85]; [GO:0016616] oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; [PTHR11835] DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE; [GO:0051287] NAD binding12.000.7988
12 Mapoly0154s0021 [GO:0003723] RNA binding; [PTHR23253] EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA; [PF02854] MIF4G domain; [GO:0005515] protein binding; [KOG0401] Translation initiation factor 4F, ribosome/mRNA-bridging subunit (eIF-4G); [K03260] translation initiation factor eIF-4F; [PF02847] MA3 domain12.410.7495
13 Mapoly0024s0126 [GO:0004471] malate dehydrogenase (decarboxylating) activity; [PF00390] Malic enzyme, N-terminal domain; [GO:0055114] oxidation-reduction process; [PTHR23406] MALIC ENZYME-RELATED; [PF03949] Malic enzyme, NAD binding domain; [KOG1257] NADP+-dependent malic enzyme; [GO:0051287] NAD binding; [PTHR23406:SF2] MALIC ENZYME15.170.7476
14 Mapoly0008s0155 [6.3.5.5] Carbamoyl-phosphate synthase (glutamine-hydrolyzing).; [PF00988] Carbamoyl-phosphate synthase small chain, CPSase domain; [PTHR11405] CARBAMOYLTRANSFERASE RELATED; [KOG0026] Anthranilate synthase, beta chain; [PF00117] Glutamine amidotransferase class-I; [K01956] carbamoyl-phosphate synthase small subunit [EC:6.3.5.5]15.200.7496
15 Mapoly0063s0091 [PF13839] GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p; [PTHR32285] FAMILY NOT NAMED; [PF14416] PMR5 N terminal Domain15.490.7647
16 Mapoly0107s0040 [PF02219] Methylenetetrahydrofolate reductase; [K00297] methylenetetrahydrofolate reductase (NADPH) [EC:1.5.1.20]; [1.5.1.20] Methylenetetrahydrofolate reductase (NAD(P)H).; [KOG0564] 5,10-methylenetetrahydrofolate reductase; [GO:0055114] oxidation-reduction process; [PTHR21091] METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED; [PTHR21091:SF31] PREDICTED PROTEIN; [GO:0004489] methylenetetrahydrofolate reductase (NADPH) activity; [GO:0006555] methionine metabolic process16.730.7529
17 Mapoly0091s0002 [GO:0016020] membrane; [PTHR11119] XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER; [GO:0006810] transport; [GO:0055085] transmembrane transport; [KOG1292] Xanthine/uracil transporters; [GO:0005215] transporter activity; [PF00860] Permease family17.440.7177
18 Mapoly0083s0034 -17.890.7800
19 Mapoly0082s0081 [PF05383] La domain; [KOG2590] RNA-binding protein LARP/SRO9 and related La domain proteins; [PTHR22792] LUPUS LA PROTEIN-RELATED18.490.7617
20 Mapoly0151s0030 [PF00557] Metallopeptidase family M24; [PTHR10804:SF11] PROLIFERATION-ASSOCIATED PROTEIN 2G4; [PTHR10804] PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P); [KOG2776] Metallopeptidase19.210.7808
21 Mapoly0016s0043 [2.7.2.4] Aspartate kinase.; [PF00742] Homoserine dehydrogenase; [GO:0016597] amino acid binding; [PTHR21499] ASPARTATE KINASE; [PF01842] ACT domain; [GO:0055114] oxidation-reduction process; [GO:0016491] oxidoreductase activity; [PF00696] Amino acid kinase family; [GO:0008152] metabolic process; [GO:0006520] cellular amino acid metabolic process; [K12524] bifunctional aspartokinase / homoserine dehydrogenase 1 [EC:2.7.2.4 1.1.1.3]; [KOG0455] Homoserine dehydrogenase; [GO:0050661] NADP binding; [PF03447] Homoserine dehydrogenase, NAD binding domain; [1.1.1.3] Homoserine dehydrogenase.19.750.7754
22 Mapoly0029s0091 [PF13855] Leucine rich repeat; [GO:0005515] protein binding; [PTHR23155] LEUCINE-RICH REPEAT-CONTAINING PROTEIN; [PF12799] Leucine Rich repeats (2 copies); [KOG0472] Leucine-rich repeat protein20.120.7027
23 Mapoly0012s0037 [PTHR11751:SF22] AMINOTRANSFERASE RELATED; [GO:0009058] biosynthetic process; [K10206] LL-diaminopimelate aminotransferase [EC:2.6.1.83]; [GO:0030170] pyridoxal phosphate binding; [2.6.1.83] LL-diaminopimelate aminotransferase.; [KOG0257] Kynurenine aminotransferase, glutamine transaminase K; [PF00155] Aminotransferase class I and II; [GO:0009089] lysine biosynthetic process via diaminopimelate; [GO:0010285] L,L-diaminopimelate aminotransferase activity; [PTHR11751] SUBGROUP I AMINOTRANSFERASE RELATED21.240.7789
24 Mapoly0012s0193 [PTHR31365] FAMILY NOT NAMED22.140.7001
25 Mapoly0110s0012 [PTHR19375] HEAT SHOCK PROTEIN 70KDA; [K03283] heat shock 70kDa protein 1/8; [PF00012] Hsp70 protein; [KOG0102] Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily23.560.7188
26 Mapoly0010s0169 [PTHR31184] FAMILY NOT NAMED; [KOG3450] Huntingtin interacting protein HYPK26.380.7454
27 Mapoly0005s0006 [GO:0003723] RNA binding; [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [KOG1670] Translation initiation factor 4F, cap-binding subunit (eIF-4E) and related cap-binding proteins; [K03259] translation initiation factor eIF-4E; [PF01652] Eukaryotic initiation factor 4E; [GO:0006413] translational initiation; [PTHR11960] EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED26.510.7581
28 Mapoly0038s0028 [6.3.4.5] Argininosuccinate synthase.; [GO:0005524] ATP binding; [PF00764] Arginosuccinate synthase; [GO:0004055] argininosuccinate synthase activity; [GO:0006526] arginine biosynthetic process; [PTHR11587] ARGININOSUCCINATE SYNTHASE; [KOG1706] Argininosuccinate synthase; [K01940] argininosuccinate synthase [EC:6.3.4.5]28.200.7681
29 Mapoly0001s0065 [GO:0019867] outer membrane; [PF07244] Surface antigen variable number repeat; [PF01103] Surface antigen; [PTHR12815] SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN28.500.7354
30 Mapoly0043s0090 [GO:0005524] ATP binding; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [6.1.1.22] Asparagine--tRNA ligase.; [KOG0554] Asparaginyl-tRNA synthetase (mitochondrial); [K01893] asparaginyl-tRNA synthetase [EC:6.1.1.22]; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)31.620.7453
31 Mapoly0030s0078 [GO:0016597] amino acid binding; [PF01842] ACT domain; [GO:0006099] tricarboxylic acid cycle; [PTHR30523] PHOSPHOENOLPYRUVATE CARBOXYLASE; [PF00311] Phosphoenolpyruvate carboxylase; [GO:0008152] metabolic process; [GO:0008964] phosphoenolpyruvate carboxylase activity; [GO:0015977] carbon fixation32.500.7005
32 Mapoly0023s0178 [GO:0005524] ATP binding; [PF00579] tRNA synthetases class I (W and Y); [GO:0000166] nucleotide binding; [K01866] tyrosyl-tRNA synthetase [EC:6.1.1.1]; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [6.1.1.1] Tyrosine--tRNA ligase.; [KOG2144] Tyrosyl-tRNA synthetase, cytoplasmic; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity32.940.7350
33 Mapoly0014s0173 [PTHR10984] ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN; [PF13850] Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC); [KOG2667] COPII vesicle protein; [PF07970] Endoplasmic reticulum vesicle transporter34.150.6974
34 Mapoly0186s0007 [PF07250] Glyoxal oxidase N-terminus; [PF09118] Domain of unknown function (DUF1929); [PTHR32208] FAMILY NOT NAMED34.410.6777
35 Mapoly0006s0254 [PTHR13026:SF0] SUBFAMILY NOT NAMED; [PTHR13026] NNP-1 PROTEIN (NOVEL NUCLEAR PROTEIN 1) (NOP52); [GO:0030688] preribosome, small subunit precursor; [PF05997] Nucleolar protein,Nop52; [GO:0006364] rRNA processing34.860.7435
36 Mapoly0001s0301 [KOG3028] Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1; [PTHR12289] METAXIN RELATED36.220.7105
37 Mapoly0014s0109 [PTHR32227] FAMILY NOT NAMED; [GO:0004553] hydrolase activity, hydrolyzing O-glycosyl compounds; [GO:0005975] carbohydrate metabolic process; [PF07983] X8 domain; [PF00332] Glycosyl hydrolases family 1737.790.6541
38 Mapoly0061s0018 [KOG2318] Uncharacterized conserved protein; [GO:0005634] nucleus; [PF08159] NUC153 domain; [PTHR12202] UNCHARACTERIZED39.800.7214
39 Mapoly0013s0072 [PTHR16092] SEC3/SYNTAXIN-RELATED; [PF09763] Exocyst complex component Sec3; [KOG2148] Exocyst protein Sec3; [PF15277] Exocyst complex component SEC3 N-terminal PIP2 binding PH42.330.6874
40 Mapoly0030s0053 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [PF00009] Elongation factor Tu GTP binding domain; [K14538] nuclear GTP-binding protein; [PF08701] GNL3L/Grn1 putative GTPase; [GO:0003924] GTPase activity; [KOG2484] GTPase; [GO:0005525] GTP binding42.660.7403
41 Mapoly0003s0204 [KOG0331] ATP-dependent RNA helicase; [GO:0005524] ATP binding; [PTHR24031:SF0] SUBFAMILY NOT NAMED; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding42.990.6842
42 Mapoly0025s0131 [GO:0006433] prolyl-tRNA aminoacylation; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [GO:0000166] nucleotide binding; [GO:0004827] proline-tRNA ligase activity; [KOG4163] Prolyl-tRNA synthetase; [PTHR11451] TRNA SYNTHETASE-RELATED; [PF03129] Anticodon binding domain; [6.1.1.15] Proline--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity; [PF09180] Prolyl-tRNA synthetase, C-terminal; [K01881] prolyl-tRNA synthetase [EC:6.1.1.15]44.160.7352
43 Mapoly0162s0018 [GO:0005840] ribosome; [PF00297] Ribosomal protein L3; [GO:0003735] structural constituent of ribosome; [PTHR11229] 50S RIBOSOMAL PROTEIN L3; [GO:0005622] intracellular; [KOG3141] Mitochondrial/chloroplast ribosomal protein L3; [GO:0006412] translation; [PTHR11229:SF0] SUBFAMILY NOT NAMED44.470.7021
44 Mapoly0040s0008 [GO:0019867] outer membrane; [PTHR12815] SORTING AND ASSEMBLY MACHINERY (SAM50) PROTEIN; [PF07244] Surface antigen variable number repeat; [PF01103] Surface antigen45.890.7451
45 Mapoly0006s0183 [PF03465] eRF1 domain 3; [KOG0688] Peptide chain release factor 1 (eRF1); [K03265] peptide chain release factor eRF subunit 1; [GO:0005737] cytoplasm; [PF03463] eRF1 domain 1; [PTHR10113] PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1; [PF03464] eRF1 domain 2; [GO:0006415] translational termination; [GO:0016149] translation release factor activity, codon specific46.280.6996
46 Mapoly0011s0120 [PTHR23323] VACUOLAR MEMBRANE PROTEIN RELATED; [PF00637] Region in Clathrin and VPS; [KOG2034] Vacuolar sorting protein PEP3/VPS18; [GO:0016192] vesicle-mediated transport; [PF05131] Pep3/Vps18/deep orange family; [PTHR23323:SF26] SUBFAMILY NOT NAMED; [GO:0006886] intracellular protein transport47.050.6718
47 Mapoly0025s0053 [PF02576] Uncharacterised BCR, YhbC family COG077947.480.6155
48 Mapoly0153s0015 [3.6.5.3] Protein-synthesizing GTPase.; [PF03143] Elongation factor Tu C-terminal domain; [PF00009] Elongation factor Tu GTP binding domain; [KOG0460] Mitochondrial translation elongation factor Tu; [GO:0003924] GTPase activity; [PTHR23115] TRANSLATION FACTOR; [K02358] elongation factor EF-Tu [EC:3.6.5.3]; [GO:0005525] GTP binding; [PF03144] Elongation factor Tu domain 247.620.6973
49 Mapoly0069s0006 [PF05221] S-adenosyl-L-homocysteine hydrolase; [3.3.1.1] Adenosylhomocysteinase.; [GO:0004013] adenosylhomocysteinase activity; [KOG1370] S-adenosylhomocysteine hydrolase; [PTHR23420] ADENOSYLHOMOCYSTEINASE; [GO:0006730] one-carbon metabolic process; [K01251] adenosylhomocysteinase [EC:3.3.1.1]; [PF00670] S-adenosyl-L-homocysteine hydrolase, NAD binding domain48.200.6544
50 Mapoly0005s0125 [PF05383] La domain; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [PF08777] RNA binding motif; [K11090] lupus La protein; [KOG4213] RNA-binding protein La; [PTHR22792] LUPUS LA PROTEIN-RELATED48.740.7313
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