Guide Gene

Gene ID
Mapoly0028s0100
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF00010] Helix-loop-helix DNA-binding domain; [GO:0046983] protein dimerization activity; [PTHR31945] FAMILY NOT NAMED

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0028s0100 [PF00010] Helix-loop-helix DNA-binding domain; [GO:0046983] protein dimerization activity; [PTHR31945] FAMILY NOT NAMED 0.00 1.0000
1 Mapoly0028s0101 [PF00010] Helix-loop-helix DNA-binding domain; [GO:0046983] protein dimerization activity; [PTHR23042:SF25] NAI1, DNA BINDING / TRANSCRIPTION FACTOR; [PTHR23042] CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS1.410.8072
2 Mapoly0001s0136 -5.660.8074
3 Mapoly0109s0037 [KOG1327] Copine; [PF00168] C2 domain; [PTHR10857] COPINE; [PF07002] Copine; [GO:0005515] protein binding9.380.7916
4 Mapoly0005s0021 [PF13266] Protein of unknown function (DUF4057); [PTHR31132] FAMILY NOT NAMED14.070.7977
5 Mapoly0056s0016 [PTHR11359] AMP DEAMINASE; [PF00962] Adenosine/AMP deaminase; [GO:0032264] IMP salvage; [K01490] AMP deaminase [EC:3.5.4.6]; [GO:0019239] deaminase activity; [GO:0003876] AMP deaminase activity; [3.5.4.6] AMP deaminase.; [KOG1096] Adenosine monophosphate deaminase14.070.7658
6 Mapoly0020s0010 -15.170.7794
7 Mapoly0153s0026 [PF00650] CRAL/TRIO domain; [PTHR10174] RETINALDEHYDE BINDING PROTEIN-RELATED; [KOG1471] Phosphatidylinositol transfer protein SEC14 and related proteins16.880.7877
8 Mapoly0031s0122 [PF10151] Uncharacterised conserved protein (DUF2359); [PTHR13448] UNCHARACTERIZED; [KOG4467] Uncharacterized conserved protein17.230.7773
9 Mapoly0077s0024 [PTHR21596] RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED17.890.7444
10 Mapoly0003s0160 [PTHR13608:SF3] SUBFAMILY NOT NAMED; [PTHR13608] UNCHARACTERIZED20.780.7681
11 Mapoly2351s0001 [GO:0005506] iron ion binding; [GO:0055114] oxidation-reduction process; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [GO:0020037] heme binding; [PTHR24298] FAMILY NOT NAMED; [PF00067] Cytochrome P45020.900.7597
12 Mapoly0144s0012 [PTHR32133] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF00646] F-box domain21.210.7853
13 Mapoly0062s0108 [GO:0005524] ATP binding; [2.7.11.26] [Tau protein] kinase.; [PF00069] Protein kinase domain; [KOG0658] Glycogen synthase kinase-3; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24057] GLYCOGEN SYNTHASE KINASE-3 ALPHA; [K03083] glycogen synthase kinase 3 beta [EC:2.7.11.26]23.240.7699
14 Mapoly0083s0045 [PTHR11079] CYTOSINE DEAMINASE; [GO:0016787] hydrolase activity; [PF00383] Cytidine and deoxycytidylate deaminase zinc-binding region; [GO:0008270] zinc ion binding; [KOG1018] Cytosine deaminase FCY1 and related enzymes; [PTHR11079:SF25] SUBFAMILY NOT NAMED25.300.7516
15 Mapoly0024s0072 [KOG0005] Ubiquitin-like protein; [GO:0005515] protein binding; [PF00240] Ubiquitin family; [PTHR10666] UBIQUITIN; [K08770] ubiquitin C25.690.7642
16 Mapoly0006s0097 [PF03168] Late embryogenesis abundant protein; [PTHR31852] FAMILY NOT NAMED27.840.7580
17 Mapoly0264s0001 [GO:0005506] iron ion binding; [KOG0156] Cytochrome P450 CYP2 subfamily; [GO:0055114] oxidation-reduction process; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [GO:0020037] heme binding; [PTHR24298] FAMILY NOT NAMED; [PF00067] Cytochrome P45028.350.6910
18 Mapoly0002s0249 [GO:0006289] nucleotide-excision repair; [GO:0005515] protein binding; [KOG0011] Nucleotide excision repair factor NEF2, RAD23 component; [PTHR10621] UV EXCISION REPAIR PROTEIN RAD23; [PF09280] XPC-binding domain; [PF00627] UBA/TS-N domain; [PF00240] Ubiquitin family; [GO:0003684] damaged DNA binding; [GO:0043161] proteasomal ubiquitin-dependent protein catabolic process; [K10839] UV excision repair protein RAD2331.980.7508
19 Mapoly0083s0043 [GO:0008375] acetylglucosaminyltransferase activity; [GO:0016020] membrane; [PF02485] Core-2/I-Branching enzyme; [PTHR31042] FAMILY NOT NAMED32.730.7641
20 Mapoly0099s0031 [PTHR12742] RNA-BINDING PROTEIN; [KOG1457] RNA binding protein (contains RRM repeats); [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)32.740.7266
21 Mapoly0007s0135 [KOG1047] Bifunctional leukotriene A4 hydrolase/aminopeptidase LTA4H; [PF09127] Leukotriene A4 hydrolase, C-terminal; [PF01433] Peptidase family M1; [GO:0019370] leukotriene biosynthetic process; [PTHR11533:SF4] LEUKOTRIENE A-4 HYDROLASE; [K01254] leukotriene-A4 hydrolase [EC:3.3.2.6]; [GO:0008237] metallopeptidase activity; [GO:0008270] zinc ion binding; [PTHR11533] PROTEASE M1 ZINC METALLOPROTEASE; [3.3.2.6] Leukotriene-A(4) hydrolase.; [GO:0006508] proteolysis34.290.7377
22 Mapoly0025s0122 [3.4.13.9] Xaa-Pro dipeptidase.; [PF05195] Aminopeptidase P, N-terminal domain; [GO:0004177] aminopeptidase activity; [K14213] Xaa-Pro dipeptidase [EC:3.4.13.9]; [GO:0030145] manganese ion binding; [PF00557] Metallopeptidase family M24; [PTHR10804:SF17] XAA-PRO DIPEPTIDASE; [KOG2737] Putative metallopeptidase; [PTHR10804] PROTEASE FAMILY M24 (METHIONYL AMINOPEPTIDASE, AMINOPEPTIDASE P)34.290.7765
23 Mapoly0008s0199 [GO:0004553] hydrolase activity, hydrolyzing O-glycosyl compounds; [GO:0005975] carbohydrate metabolic process; [PTHR22762] ALPHA-GLUCOSIDASE; [PF01055] Glycosyl hydrolases family 31; [PTHR22762:SF7] NEUTRAL ALPHA-GLUCOSIDASE AB PRECURSOR (GLUCOSIDASE II ALPHA SUBUNIT) (ALPHA GLUCOSIDASE 2); [KOG1065] Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 3136.990.7323
24 Mapoly0006s0226 [K09422] myb proto-oncogene protein, plant; [PF00249] Myb-like DNA-binding domain; [PTHR10641] MYB-LIKE DNA-BINDING PROTEIN MYB; [GO:0003682] chromatin binding; [PTHR10641:SF203] SUBFAMILY NOT NAMED37.230.7278
25 Mapoly0214s0002 [GO:0043565] sequence-specific DNA binding; [PF00808] Histone-like transcription factor (CBF/NF-Y) and archaeal histone; [PTHR11064] CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED; [GO:0005622] intracellular; [KOG0869] CCAAT-binding factor, subunit A (HAP3)38.250.7651
26 Mapoly0124s0021 [PF00010] Helix-loop-helix DNA-binding domain; [GO:0046983] protein dimerization activity; [PTHR31945] FAMILY NOT NAMED39.950.7159
27 Mapoly0014s0053 [KOG4408] Putative Mg2+ and Co2+ transporter CorD; [PF04379] Protein of unknown function (DUF525); [PTHR14289] F-BOX ONLY PROTEIN 3; [K10290] F-box protein 341.380.7804
28 Mapoly0020s0150 [GO:0005840] ribosome; [KOG3418] 60S ribosomal protein L27; [PF01777] Ribosomal L27e protein family; [K02901] large subunit ribosomal protein L27e; [PTHR10497] 60S RIBOSOMAL PROTEIN L27; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PTHR10497:SF0] 60S RIBOSOMAL PROTEIN L27; [GO:0006412] translation41.500.7819
29 Mapoly0113s0032 [GO:0006396] RNA processing; [KOG0331] ATP-dependent RNA helicase; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [PF02170] PAZ domain; [PTHR14950] HELICASE-RELATED; [PF00035] Double-stranded RNA binding motif; [GO:0005515] protein binding; [GO:0016891] endoribonuclease activity, producing 5'-phosphomonoesters; [PF03368] Dicer dimerisation domain; [PF00270] DEAD/DEAH box helicase; [PF00636] Ribonuclease III domain; [GO:0004525] ribonuclease III activity; [PF00271] Helicase conserved C-terminal domain; [GO:0003676] nucleic acid binding42.710.7393
30 Mapoly0011s0101 -43.150.7726
31 Mapoly0029s0142 [GO:0016020] membrane; [PTHR18966] IONOTROPIC GLUTAMATE RECEPTOR; [PF00497] Bacterial extracellular solute-binding proteins, family 3; [GO:0005234] extracellular-glutamate-gated ion channel activity; [KOG1052] Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits; [GO:0006810] transport; [PF00060] Ligand-gated ion channel; [GO:0004970] ionotropic glutamate receptor activity; [K05387] glutamate receptor, ionotropic, other eukaryote; [PF01094] Receptor family ligand binding region; [GO:0005215] transporter activity47.620.7171
32 Mapoly0010s0153 [KOG1390] Acetyl-CoA acetyltransferase; [PTHR18919] ACETYL-COA C-ACYLTRANSFERASE; [K00626] acetyl-CoA C-acetyltransferase [EC:2.3.1.9]; [GO:0016747] transferase activity, transferring acyl groups other than amino-acyl groups; [PF00108] Thiolase, N-terminal domain; [GO:0008152] metabolic process; [2.3.1.9] Acetyl-CoA C-acetyltransferase.; [PF02803] Thiolase, C-terminal domain48.080.7472
33 Mapoly0001s0078 [KOG1483] Zn2+ transporter ZNT1 and related Cd2+/Zn2+ transporters (cation diffusion facilitator superfamily); [GO:0055085] transmembrane transport; [PF01545] Cation efflux family; [GO:0006812] cation transport; [GO:0016021] integral to membrane; [GO:0008324] cation transmembrane transporter activity; [PTHR11562] CATION EFFLUX PROTEIN/ ZINC TRANSPORTER48.560.6926
34 Mapoly0174s0020 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [PF13086] AAA domain; [PF13087] AAA domain; [KOG1801] tRNA-splicing endonuclease positive effector (SEN1)48.760.7567
35 Mapoly0050s0035 [PTHR31867] FAMILY NOT NAMED; [PF03330] Rare lipoprotein A (RlpA)-like double-psi beta-barrel; [PF01357] Pollen allergen49.140.6829
36 Mapoly0029s0060 [KOG1187] Serine/threonine protein kinase; [GO:0006950] response to stress; [PF07714] Protein tyrosine kinase; [PF00582] Universal stress protein family; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE49.360.6096
37 Mapoly0043s0018 [GO:0005840] ribosome; [KOG3449] 60S acidic ribosomal protein P2; [GO:0006414] translational elongation; [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PF00428] 60s Acidic ribosomal protein50.380.7802
38 Mapoly0188s0010 -52.120.7762
39 Mapoly0057s0093 [GO:0005515] protein binding; [PTHR12197:SF75] PUTATIVE UNCHARACTERIZED PROTEIN; [PF00856] SET domain; [PTHR12197] SET AND MYND DOMAIN CONTAINING53.100.7074
40 Mapoly0002s0232 [KOG1385] Nucleoside phosphatase; [GO:0016787] hydrolase activity; [PTHR11782] ADENOSINE/GUANOSINE DIPHOSPHATASE; [K14641] apyrase [EC:3.6.1.5]; [3.6.1.5] Apyrase.; [PF01150] GDA1/CD39 (nucleoside phosphatase) family54.740.7570
41 Mapoly0074s0069 -54.770.7047
42 Mapoly0011s0129 [KOG0131] Splicing factor 3b, subunit 4; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [PTHR24011] FAMILY NOT NAMED; [PF07145] Ataxin-2 C-terminal region; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)55.510.7180
43 Mapoly0025s0025 [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN; [K13463] coronatine-insensitive protein 1; [KOG1947] Leucine rich repeat proteins, some proteins contain F-box57.270.7165
44 Mapoly0081s0021 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF07645] Calcium-binding EGF domain; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PF13947] Wall-associated receptor kinase galacturonan-binding; [GO:0030247] polysaccharide binding; [GO:0006468] protein phosphorylation; [GO:0005509] calcium ion binding; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE57.720.7061
45 Mapoly0062s0003 [K10580] ubiquitin-conjugating enzyme E2 N [EC:6.3.2.19]; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0417] Ubiquitin-protein ligase; [PF00179] Ubiquitin-conjugating enzyme58.170.7581
46 Mapoly0007s0247 [PF00168] C2 domain; [GO:0005515] protein binding58.790.6729
47 Mapoly0027s0071 [K08679] UDP-glucuronate 4-epimerase [EC:5.1.3.6]; [PF01370] NAD dependent epimerase/dehydratase family; [GO:0003824] catalytic activity; [KOG1371] UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase; [5.1.3.6] UDP-glucuronate 4-epimerase.; [GO:0050662] coenzyme binding; [PTHR10366] NAD DEPENDENT EPIMERASE/DEHYDRATASE59.190.6859
48 Mapoly0001s0216 [KOG0121] Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily); [PTHR24012] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)60.250.7552
49 Mapoly0013s0080 [GO:0005524] ATP binding; [KOG1187] Serine/threonine protein kinase; [PF07714] Protein tyrosine kinase; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE60.830.6745
50 Mapoly0011s0107 -61.250.7517
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