Guide Gene

Gene ID
Mapoly0006s0263
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF04969] CS domain; [PF01202] Shikimate kinase; [PTHR21087] SHIKIMATE KINASE; [PTHR21087:SF3] gb def: Shikimate kinase

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0006s0263 [PF04969] CS domain; [PF01202] Shikimate kinase; [PTHR21087] SHIKIMATE KINASE; [PTHR21087:SF3] gb def: Shikimate kinase 0.00 1.0000
1 Mapoly0097s0055 [PF00448] SRP54-type protein, GTPase domain; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [K03110] fused signal recognition particle receptor; [PF02881] SRP54-type protein, helical bundle domain; [GO:0005525] GTP binding; [PTHR11564] GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS1.410.9109
2 Mapoly0094s0013 -2.450.8809
3 Mapoly0070s0076 [PF11805] Protein of unknown function (DUF3326)3.000.8438
4 Mapoly0115s0052 -3.000.8579
5 Mapoly0007s0246 [PTHR14911] FAMILY NOT NAMED; [PF01170] Putative RNA methylase family UPF00203.740.8529
6 Mapoly0002s0047 [PF02536] mTERF; [PTHR13068] CGI-12 PROTEIN-RELATED; [PTHR13068:SF6] gb def: agcp9491 [anopheles gambiae str. pest]4.000.8515
7 Mapoly0015s0007 -4.240.8561
8 Mapoly0159s0002 -4.470.8573
9 Mapoly0001s0231 [PF11152] Protein of unknown function (DUF2930)5.830.8199
10 Mapoly0097s0056 -6.320.8401
11 Mapoly0058s0022 [PTHR31906] FAMILY NOT NAMED; [PF04755] PAP_fibrillin6.930.8390
12 Mapoly0101s0005 [K01883] cysteinyl-tRNA synthetase [EC:6.1.1.16]; [PTHR10890] CYSTEINYL-TRNA SYNTHETASE; [PF01406] tRNA synthetases class I (C) catalytic domain; [6.1.1.16] Cysteine--tRNA ligase.; [KOG2007] Cysteinyl-tRNA synthetase7.750.8162
13 Mapoly0073s0014 -8.120.8396
14 Mapoly0147s0036 -9.170.8577
15 Mapoly0132s0018 [GO:0008168] methyltransferase activity; [GO:0032259] methylation; [PF04072] Leucine carboxyl methyltransferase10.490.7789
16 Mapoly0152s0023 -11.620.8291
17 Mapoly0053s0015 -16.580.8057
18 Mapoly0177s0016 [PTHR19370] NADH-CYTOCHROME B5 REDUCTASE; [K02639] ferredoxin; [GO:0009055] electron carrier activity; [PF00111] 2Fe-2S iron-sulfur cluster binding domain; [GO:0051536] iron-sulfur cluster binding18.330.8319
19 Mapoly0015s0009 [GO:0006779] porphyrin-containing compound biosynthetic process; [PTHR21091] METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED; [KOG2872] Uroporphyrinogen decarboxylase; [PF01208] Uroporphyrinogen decarboxylase (URO-D); [GO:0004853] uroporphyrinogen decarboxylase activity18.970.8099
20 Mapoly0027s0004 [GO:0008168] methyltransferase activity; [2.1.1.-] Methyltransferases.; [PTHR10108] METHYLTRANSFERASE; [PF01209] ubiE/COQ5 methyltransferase family; [K06127] ubiquinone biosynthesis methyltransferase [EC:2.1.1.-]; [KOG1540] Ubiquinone biosynthesis methyltransferase COQ519.180.7862
21 Mapoly0005s0259 [PTHR11014] PEPTIDASE M20 FAMILY MEMBER19.800.7853
22 Mapoly0025s0105 [PTHR10516] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [GO:0006457] protein folding; [PTHR10516:SF179] SUBFAMILY NOT NAMED; [PF00254] FKBP-type peptidyl-prolyl cis-trans isomerase; [KOG0544] FKBP-type peptidyl-prolyl cis-trans isomerase21.630.7817
23 Mapoly0019s0155 [PTHR11089] GTP-BINDING PROTEIN-RELATED; [PF01926] 50S ribosome-binding GTPase; [KOG2484] GTPase; [GO:0005525] GTP binding23.070.8016
24 Mapoly0104s0006 [PTHR31793] FAMILY NOT NAMED; [K07107] acyl-CoA thioester hydrolase [EC:3.1.2.-]; [3.1.2.-] Thiolester hydrolases.; [PF03061] Thioesterase superfamily23.690.6762
25 Mapoly0006s0155 [GO:0003723] RNA binding; [PTHR11078] N UTILIZATION SUBSTANCE PROTEIN B-RELATED; [GO:0006355] regulation of transcription, DNA-dependent; [PF01029] NusB family; [GO:0006353] DNA-dependent transcription, termination23.870.7934
26 Mapoly0031s0111 -24.540.7892
27 Mapoly0056s0024 [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [PTHR22594:SF6] ASPARTYL-TRNA SYNTHETASE; [GO:0006421] asparaginyl-tRNA aminoacylation; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [6.1.1.22] Asparagine--tRNA ligase.; [KOG0554] Asparaginyl-tRNA synthetase (mitochondrial); [K01893] asparaginyl-tRNA synthetase [EC:6.1.1.22]; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004816] asparagine-tRNA ligase activity; [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)25.040.8178
28 Mapoly0021s0119 [PTHR31906] FAMILY NOT NAMED; [PF04755] PAP_fibrillin25.610.8274
29 Mapoly0045s0091 [GO:0010207] photosystem II assembly; [PF13326] Photosystem II Pbs2725.810.8191
30 Mapoly0075s0055 -26.530.7501
31 Mapoly0016s0010 [PTHR11778] SERYL-TRNA SYNTHETASE; [GO:0004828] serine-tRNA ligase activity; [GO:0005524] ATP binding; [K01875] seryl-tRNA synthetase [EC:6.1.1.11]; [GO:0006434] seryl-tRNA aminoacylation; [GO:0005737] cytoplasm; [PF00587] tRNA synthetase class II core domain (G, H, P, S and T); [KOG2509] Seryl-tRNA synthetase; [PF02403] Seryl-tRNA synthetase N-terminal domain; [GO:0000166] nucleotide binding; [6.1.1.11] Serine--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity26.940.8120
32 Mapoly0160s0024 [PF05140] ResB-like family; [K07399] cytochrome c biogenesis protein; [PTHR31566] FAMILY NOT NAMED27.200.7618
33 Mapoly0047s0017 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [KOG0766] Predicted mitochondrial carrier protein; [PTHR24089:SF107] PUTATIVE MITOCHONDRIAL CARRIER PROTEIN LOC49414127.280.7983
34 Mapoly0003s0136 [KOG1454] Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily); [PTHR10992] ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN; [PF12697] Alpha/beta hydrolase family30.810.8337
35 Mapoly0001s0103 [GO:0009055] electron carrier activity; [GO:0015035] protein disulfide oxidoreductase activity; [KOG0911] Glutaredoxin-related protein; [GO:0045454] cell redox homeostasis; [PTHR10293] GLUTAREDOXIN-RELATED PROTEIN; [PF00462] Glutaredoxin; [PTHR10293:SF16] GLUTAREDOXIN-RELATED PROTEIN33.500.7982
36 Mapoly0336s0001 [GO:0016021] integral to membrane; [GO:0004252] serine-type endopeptidase activity; [PF01694] Rhomboid family; [KOG2289] Rhomboid family proteins; [PTHR22936] RHOMBOID-RELATED; [GO:0006508] proteolysis; [PTHR22936:SF12] gb def: Similar to membrane protein33.910.8103
37 Mapoly0031s0117 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family37.640.7302
38 Mapoly0009s0023 [PF04483] Protein of unknown function (DUF565)37.950.7416
39 Mapoly0021s0085 [GO:0055114] oxidation-reduction process; [PF01266] FAD dependent oxidoreductase; [PF01494] FAD binding domain; [GO:0016491] oxidoreductase activity; [PTHR10617] ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE38.570.7855
40 Mapoly0055s0076 -40.250.6802
41 Mapoly0185s0016 [PF00472] RF-1 domain; [PTHR11075] PEPTIDE CHAIN RELEASE FACTOR; [GO:0006415] translational termination; [KOG3429] Predicted peptidyl-tRNA hydrolase; [GO:0003747] translation release factor activity40.250.7734
42 Mapoly0076s0092 [GO:0005737] cytoplasm; [GO:0055114] oxidation-reduction process; [KOG2711] Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase; [GO:0006072] glycerol-3-phosphate metabolic process; [GO:0005975] carbohydrate metabolic process; [PF07479] NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; [GO:0016616] oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; [PF01210] NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; [GO:0046168] glycerol-3-phosphate catabolic process; [PTHR11728] GLYCEROL-3-PHOSPHATE DEHYDROGENASE; [GO:0051287] NAD binding; [GO:0004367] glycerol-3-phosphate dehydrogenase [NAD+] activity; [GO:0009331] glycerol-3-phosphate dehydrogenase complex41.350.8006
43 Mapoly0094s0070 [GO:0016020] membrane; [PTHR11384] ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER; [GO:0005524] ATP binding; [KOG0060] Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis); [PF06472] ABC transporter transmembrane region 2; [GO:0016887] ATPase activity; [GO:0006810] transport; [PTHR11384:SF3] ATP-BINDING CASSETTE, SUB-FAMILY D, MEMBER 4 (PEROXISOMAL MEMBRANE PROTEIN 69); [PF00005] ABC transporter42.360.7913
44 Mapoly0218s0001 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [GO:0006457] protein folding; [KOG0880] Peptidyl-prolyl cis-trans isomerase42.850.7971
45 Mapoly0047s0104 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family43.080.8014
46 Mapoly0085s0045 [GO:0004176] ATP-dependent peptidase activity; [PF02190] ATP-dependent protease La (LON) domain; [GO:0006508] proteolysis43.270.8038
47 Mapoly0083s0057 -43.580.6651
48 Mapoly0826s0001 [PF00226] DnaJ domain; [PTHR24076] FAMILY NOT NAMED43.820.6741
49 Mapoly0024s0098 [PF00472] RF-1 domain; [PTHR11075] PEPTIDE CHAIN RELEASE FACTOR; [GO:0006415] translational termination; [KOG3429] Predicted peptidyl-tRNA hydrolase; [GO:0003747] translation release factor activity44.500.7093
50 Mapoly0110s0034 [GO:0016788] hydrolase activity, acting on ester bonds; [GO:0006505] GPI anchor metabolic process; [GO:0006886] intracellular protein transport; [PF07819] PGAP1-like protein44.700.7936
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