Guide Gene

Gene ID
Mapoly0005s0200
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG1898] Splicing factor 3b, subunit 3; [PF10433] Mono-functional DNA-alkylating methyl methanesulfonate N-term; [PF03178] CPSF A subunit region; [GO:0005634] nucleus; [PTHR10644] DNA REPAIR/RNA PROCESSING CPSF FAMILY; [GO:0003676] nucleic acid binding; [PTHR10644:SF4] SUBFAMILY NOT NAMED

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0005s0200 [KOG1898] Splicing factor 3b, subunit 3; [PF10433] Mono-functional DNA-alkylating methyl methanesulfonate N-term; [PF03178] CPSF A subunit region; [GO:0005634] nucleus; [PTHR10644] DNA REPAIR/RNA PROCESSING CPSF FAMILY; [GO:0003676] nucleic acid binding; [PTHR10644:SF4] SUBFAMILY NOT NAMED 0.00 1.0000
1 Mapoly0002s0070 [GO:0008270] zinc ion binding; [PTHR23336:SF2] SUBFAMILY NOT NAMED; [PF13589] Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [PTHR23336] ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.; [PF07496] CW-type Zinc Finger5.660.7518
2 Mapoly0003s0181 [PF01391] Collagen triple helix repeat (20 copies)8.940.6879
3 Mapoly0038s0096 [PTHR12446] TESMIN/TSO1-RELATED; [PF03638] Tesmin/TSO1-like CXC domain, cysteine-rich domain9.900.6930
4 Mapoly0090s0049 [PF13831] PHD-finger; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF13832] PHD-zinc-finger like domain; [PF00856] SET domain; [KOG1080] Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases; [PTHR13793] PHD FINGER PROTEINS; [PF00855] PWWP domain; [PTHR13793:SF5] TRITHORAX12.330.7420
5 Mapoly0097s0022 -12.330.7019
6 Mapoly0030s0034 -12.960.6611
7 Mapoly0022s0091 [PTHR23339] TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE; [PF14566] Inositol hexakisphosphate13.710.7140
8 Mapoly0016s0106 -23.470.6474
9 Mapoly0028s0080 [GO:0005515] protein binding; [PTHR16266] WD REPEAT DOMAIN 9; [PF00439] Bromodomain; [KOG0644] Uncharacterized conserved protein, contains WD40 repeat and BROMO domains; [PF00400] WD domain, G-beta repeat23.750.7202
10 Mapoly0038s0067 [PF09333] ATG C terminal domain; [GO:0006914] autophagy; [PTHR13190] FAMILY NOT NAMED; [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter24.190.6942
11 Mapoly0043s0138 [PTHR24078:SF25] DNAJ HOMOLOG SUBFAMILY C MEMBER 13; [PF00226] DnaJ domain; [PF14237] Domain of unknown function (DUF4339); [KOG1789] Endocytosis protein RME-8, contains DnaJ domain; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER28.570.7034
12 Mapoly0091s0020 [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [GO:0006661] phosphatidylinositol biosynthetic process; [K00888] phosphatidylinositol 4-kinase [EC:2.7.1.67]; [GO:0046854] phosphatidylinositol phosphorylation; [KOG0903] Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion; [PTHR10048] PHOSPHATIDYLINOSITOL KINASE; [PF00454] Phosphatidylinositol 3- and 4-kinase; [GO:0004430] 1-phosphatidylinositol 4-kinase activity; [PTHR10048:SF22] PHOSPHATIDYLINOSITOL 4-KINASE BETA; [2.7.1.67] 1-phosphatidylinositol 4-kinase.; [GO:0048015] phosphatidylinositol-mediated signaling30.850.6829
13 Mapoly0149s0001 [PF00350] Dynamin family; [PTHR11566] DYNAMIN; [GO:0003924] GTPase activity; [GO:0005525] GTP binding32.300.5559
14 Mapoly0036s0010 [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [GO:0005515] protein binding; [KOG0940] Ubiquitin protein ligase RSP5/NEDD4; [6.3.2.19] Ubiquitin--protein ligase.; [K10591] E3 ubiquitin-protein ligase NEDD4 [EC:6.3.2.19]; [PF00240] Ubiquitin family; [GO:0004842] ubiquitin-protein ligase activity; [PF00632] HECT-domain (ubiquitin-transferase)35.500.6454
15 Mapoly0192s0005 [KOG1082] Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing; [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [PTHR22884] SET DOMAIN PROTEINS; [PF07496] CW-type Zinc Finger36.330.7112
16 Mapoly0036s0090 [PTHR10857] COPINE; [PTHR10857:SF12] SUBFAMILY NOT NAMED; [PF10539] Development and cell death domain37.950.6350
17 Mapoly0093s0032 [GO:0003677] DNA binding; [PF13891] Potential DNA-binding domain; [GO:0006355] regulation of transcription, DNA-dependent; [PF02362] B3 DNA binding domain; [PTHR31677] FAMILY NOT NAMED; [PF00847] AP2 domain; [GO:0003700] sequence-specific DNA binding transcription factor activity39.000.7014
18 Mapoly0061s0049 -41.580.7030
19 Mapoly0011s0090 [PF08263] Leucine rich repeat N-terminal domain; [GO:0005515] protein binding; [PF00560] Leucine Rich Repeat; [PF12799] Leucine Rich repeats (2 copies); [PTHR24420] LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE; [KOG0472] Leucine-rich repeat protein42.860.6981
20 Mapoly0087s0049 -43.820.6649
21 Mapoly0075s0039 [PTHR21563] UNCHARACTERIZED; [PF10650] Putative zinc-finger domain44.160.6923
22 Mapoly0107s0042 [PTHR23196:SF1] PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN; [PF00533] BRCA1 C Terminus (BRCT) domain; [PTHR23196] PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN50.440.6979
23 Mapoly0001s0480 [PF00249] Myb-like DNA-binding domain; [PTHR13992] NUCLEAR RECEPTOR CO-REPRESSOR RELATED (NCOR); [GO:0003682] chromatin binding; [PTHR13992:SF7] GB DEF: ZGC:56355 PROTEIN; [KOG3227] Calcium-responsive transcription coactivator50.740.6517
24 Mapoly0001s0118 [GO:0005515] protein binding; [PF00856] SET domain; [PTHR22884] SET DOMAIN PROTEINS54.410.6982
25 Mapoly0082s0015 [GO:0008270] zinc ion binding; [PTHR13145] SSM4 PROTEIN; [PTHR13145:SF0] SUBFAMILY NOT NAMED; [6.3.2.19] Ubiquitin--protein ligase.; [K10661] E3 ubiquitin-protein ligase MARCH6 [EC:6.3.2.19]; [PF12906] RING-variant domain63.000.6494
26 Mapoly0139s0018 [KOG4172] Predicted E3 ubiquitin ligase; [PTHR24188] ANKYRIN REPEAT PROTEIN; [PF12796] Ankyrin repeats (3 copies); [PF13920] Zinc finger, C3HC4 type (RING finger)64.170.6169
27 Mapoly0105s0033 [PF07524] Bromodomain associated64.650.6620
28 Mapoly0026s0032 -67.480.6298
29 Mapoly0105s0003 [GO:0005524] ATP binding; [K08827] serine/threonine-protein kinase PRP4 [EC:2.7.11.1]; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [2.7.11.1] Non-specific serine/threonine protein kinase.; [GO:0006468] protein phosphorylation; [KOG0670] U4/U6-associated splicing factor PRP4; [PTHR24056:SF45] SERINE/THREONINE-PROTEIN KINASE PRP4 HOMOLOG; [PTHR24056] CELL DIVISION PROTEIN KINASE69.990.6611
30 Mapoly0068s0065 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family72.170.5914
31 Mapoly0031s0080 [GO:0016020] membrane; [PTHR12741] LYST-INTERACTING PROTEIN LIP5 (DOPAMINE RESPONSIVE PROTEIN DRG-1); [PF02364] 1,3-beta-glucan synthase component; [GO:0006075] (1-3)-beta-D-glucan biosynthetic process; [KOG0916] 1,3-beta-glucan synthase/callose synthase catalytic subunit; [GO:0000148] 1,3-beta-D-glucan synthase complex; [PF14288] 1,3-beta-glucan synthase subunit FKS1, domain-1; [K11000] callose synthase [EC:2.4.1.-]; [GO:0003843] 1,3-beta-D-glucan synthase activity; [2.4.1.-] Hexosyltransferases.; [PTHR12741:SF7] gb def: ENSANGP00000009396 (Fragment)72.830.6407
32 Mapoly0003s0051 -78.420.5160
33 Mapoly0005s0162 [GO:0008168] methyltransferase activity; [PTHR13107] KARYOGAMY PROTEIN KAR4-RELATED; [PF05063] MT-A70; [KOG2097] Predicted N6-adenine methylase involved in transcription regulation; [GO:0006139] nucleobase-containing compound metabolic process; [PTHR13107:SF0] SUBFAMILY NOT NAMED78.690.6814
34 Mapoly0028s0074 [PTHR22981] 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED; [PF00855] PWWP domain; [PTHR22981:SF27] SUBFAMILY NOT NAMED79.400.5362
35 Mapoly0144s0002 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [KOG0151] Predicted splicing regulator, contains RRM, SWAP and RPR domains; [K12842] U2-associated protein SR140; [GO:0003676] nucleic acid binding; [PTHR23140] RNA PROCESSING PROTEIN LD23810P; [PF01805] Surp module; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)79.540.6666
36 Mapoly0025s0094 [PTHR22970] FAMILY NOT NAMED88.390.6140
37 Mapoly0037s0107 [PTHR24412] FAMILY NOT NAMED; [PF00651] BTB/POZ domain; [PF07707] BTB And C-terminal Kelch; [GO:0005515] protein binding91.210.5438
38 Mapoly0002s0107 [KOG2177] Predicted E3 ubiquitin ligase91.910.6612
39 Mapoly0007s0132 [KOG2011] Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3; [PF08514] STAG domain; [PTHR11199:SF0] SUBFAMILY NOT NAMED; [K06671] cohesin complex subunit SA-1/2; [PTHR11199] STROMAL ANTIGEN92.110.6488
40 Mapoly0065s0042 -95.920.5743
41 Mapoly0021s0105 [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [PF00098] Zinc knuckle; [PTHR22884] SET DOMAIN PROTEINS; [GO:0003676] nucleic acid binding96.480.6514
42 Mapoly0021s0042 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [KOG0298] DEAD box-containing helicase-like transcription factor/DNA repair protein; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain96.990.6441
43 Mapoly0202s0008 [GO:0005097] Rab GTPase activator activity; [PTHR22957] TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN; [GO:0032313] regulation of Rab GTPase activity; [PF00566] Rab-GTPase-TBC domain98.360.6304
44 Mapoly0002s0148 [PF04109] Autophagy protein Apg9; [PTHR13038:SF10] AUTOPHAGY PROTEIN 9; [KOG2173] Integral membrane protein; [PTHR13038] APG9 AUTOPHAGY 9100.140.5923
45 Mapoly0007s0175 [PTHR14296] FAMILY NOT NAMED; [PTHR14296:SF3] SUBFAMILY NOT NAMED; [PF02791] DDT domain101.080.6363
46 Mapoly0020s0144 [K11266] MAternally affected uncoordination; [PTHR21394] UNCHARACTERIZED; [PF10345] Cohesin loading factor; [KOG2300] Uncharacterized conserved protein103.250.5993
47 Mapoly0084s0085 [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN; [PTHR21717:SF9] TELOMERIC REPEAT BINDING PROTEIN 1104.150.5885
48 Mapoly0005s0159 [GO:0003677] DNA binding; [KOG0484] Transcription factor PHOX2/ARIX, contains HOX domain; [GO:0006355] regulation of transcription, DNA-dependent; [PF00046] Homeobox domain; [PF05066] HB1, ASXL, restriction endonuclease HTH domain; [PTHR24326] FAMILY NOT NAMED; [PF02791] DDT domain; [GO:0006351] transcription, DNA-dependent; [PF15612] WSTF, HB1, Itc1p, MBD9 motif 1108.250.6443
49 Mapoly0086s0003 -110.170.4995
50 Mapoly0175s0011 [KOG4172] Predicted E3 ubiquitin ligase; [PTHR15600] FAMILY NOT NAMED; [PF13920] Zinc finger, C3HC4 type (RING finger)110.750.6189
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