Guide Gene

Gene ID
Mapoly0021s0042
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [GO:0005524] ATP binding; [KOG0298] DEAD box-containing helicase-like transcription factor/DNA repair protein; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0021s0042 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [KOG0298] DEAD box-containing helicase-like transcription factor/DNA repair protein; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [PF00271] Helicase conserved C-terminal domain 0.00 1.0000
1 Mapoly0043s0012 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [K13123] G patch domain-containing protein 1; [PTHR13384] FAMILY NOT NAMED; [KOG2138] Predicted RNA binding protein, contains G-patch domain; [PF07713] Protein of unknown function (DUF1604); [PF01805] Surp module3.610.8477
2 Mapoly0028s0116 [PTHR22884] SET DOMAIN PROTEINS6.320.8440
3 Mapoly0048s0100 [PTHR18937:SF8] STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC3; [GO:0005524] ATP binding; [KOG0964] Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3); [GO:0008280] cohesin core heterodimer; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [GO:0007064] mitotic sister chromatid cohesion; [PTHR18937] STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER; [PF02463] RecF/RecN/SMC N terminal domain; [GO:0006281] DNA repair; [GO:0051276] chromosome organization; [GO:0005694] chromosome; [PF06470] SMC proteins Flexible Hinge Domain; [K06669] structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)8.660.8231
4 Mapoly0043s0034 [PTHR13233] MICROSPHERULE PROTEIN 1; [GO:0005515] protein binding; [PTHR13233:SF0] SUBFAMILY NOT NAMED; [PF13325] N-terminal region of micro-spherule protein; [PF00498] FHA domain11.660.8336
5 Mapoly0002s0107 [KOG2177] Predicted E3 ubiquitin ligase12.610.8370
6 Mapoly0114s0035 [PTHR31169] FAMILY NOT NAMED; [PF10497] Zinc-finger domain of monoamine-oxidase A repressor R112.650.8046
7 Mapoly0001s0391 [GO:0005634] nucleus; [PF05965] F/Y rich C-terminus14.490.8225
8 Mapoly0029s0108 [PTHR10161] TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5; [K14379] tartrate-resistant acid phosphatase type 5 [EC:3.1.3.2]; [PF00149] Calcineurin-like phosphoesterase; [GO:0016787] hydrolase activity; [KOG2679] Purple (tartrate-resistant) acid phosphatase; [3.1.3.2] Acid phosphatase.15.870.8228
9 Mapoly0162s0013 [PF00929] Exonuclease; [PF00488] MutS domain V; [GO:0005524] ATP binding; [PTHR11361] DNA MISMATCH REPAIR MUTS RELATED PROTEINS; [PF05188] MutS domain II; [PTHR11361:SF34] DNA MISMATCH REPAIR PROTEIN MUTS; [GO:0006298] mismatch repair; [GO:0030983] mismatched DNA binding; [KOG0218] Mismatch repair MSH3; [PF01624] MutS domain I; [PF05192] MutS domain III; [PF05190] MutS family domain IV16.250.8212
10 Mapoly0140s0030 [PF00773] RNB domain; [PTHR23355] RIBONUCLEASE; [KOG2102] Exosomal 3'-5' exoribonuclease complex, subunit Rrp44/Dis318.730.7872
11 Mapoly0005s0056 [GO:0005524] ATP binding; [PTHR11752] HELICASE SKI2W; [KOG0947] Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF08148] DSHCT (NUC185) domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [PF13234] rRNA-processing arch domain; [GO:0003676] nucleic acid binding; [GO:0016818] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides; [K12599] antiviral helicase SKI2 [EC:3.6.4.-]19.750.7883
12 Mapoly0009s0010 [PTHR21677] CRAMPED PROTEIN21.630.8020
13 Mapoly0007s0100 [PTHR15828] CYTOKINE RECEPTOR-LIKE FACTOR 323.240.8000
14 Mapoly0039s0014 [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN24.170.7441
15 Mapoly0001s0369 [K12879] THO complex subunit 2; [PF11262] Transcription factor/nuclear export subunit protein 2; [PTHR21597] THO2 PROTEIN; [PF11732] Transcription- and export-related complex subunit; [PTHR21597:SF0] SUBFAMILY NOT NAMED; [KOG1874] KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin425.810.8153
16 Mapoly0006s0033 [PF02373] JmjC domain, hydroxylase; [PTHR12549] JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN; [PF08879] WRC26.150.7567
17 Mapoly0010s0012 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF06461] Domain of Unknown Function (DUF1086); [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00176] SNF2 family N-terminal domain; [PF06465] Domain of Unknown Function (DUF1087); [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [K11643] chromodomain-helicase-DNA-binding protein 4 [EC:3.6.4.12]; [KOG0384] Chromodomain-helicase DNA-binding protein28.530.8121
18 Mapoly0080s0034 [2.1.1.43] Histone-lysine N-methyltransferase.; [KOG1082] Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing; [K11419] histone-lysine N-methyltransferase SUV39H [EC:2.1.1.43]; [PF05033] Pre-SET motif; [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [GO:0018024] histone-lysine N-methyltransferase activity; [PTHR22884] SET DOMAIN PROTEINS; [GO:0005634] nucleus; [GO:0034968] histone lysine methylation; [PF13771] PHD-like zinc-binding domain30.000.7798
19 Mapoly0075s0051 [GO:0006355] regulation of transcription, DNA-dependent; [PF02309] AUX/IAA family; [GO:0005634] nucleus; [PTHR31384] FAMILY NOT NAMED30.850.8052
20 Mapoly0061s0046 [KOG0170] E3 ubiquitin protein ligase; [PTHR11254:SF73] HECT UBIQUITIN-PROTEIN LIGASE 3 (KAKTUS PROTEIN); [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [6.3.2.19] Ubiquitin--protein ligase.; [GO:0004842] ubiquitin-protein ligase activity; [K10590] E3 ubiquitin-protein ligase TRIP12 [EC:6.3.2.19]; [PF00632] HECT-domain (ubiquitin-transferase)31.940.8028
21 Mapoly0001s0041 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF00271] Helicase conserved C-terminal domain; [GO:0005515] protein binding; [KOG0386] Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily); [PF00439] Bromodomain; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain33.020.8126
22 Mapoly0014s0197 [KOG4822] Predicted nuclear membrane protein involved in mRNA transport and sex determination via splicing modulation; [PTHR23185:SF0] SUBFAMILY NOT NAMED; [PTHR23185] UNCHARACTERIZED33.820.7930
23 Mapoly0032s0010 -34.290.8114
24 Mapoly0014s0121 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0390] DNA repair protein, SNF2 family; [PF00271] Helicase conserved C-terminal domain35.240.7659
25 Mapoly0090s0049 [PF13831] PHD-finger; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF13832] PHD-zinc-finger like domain; [PF00856] SET domain; [KOG1080] Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases; [PTHR13793] PHD FINGER PROTEINS; [PF00855] PWWP domain; [PTHR13793:SF5] TRITHORAX35.720.7814
26 Mapoly0002s0195 [PTHR15180] GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1; [PF04182] B-block binding subunit of TFIIIC35.890.7927
27 Mapoly0105s0033 [PF07524] Bromodomain associated36.740.7678
28 Mapoly0043s0117 [PF13812] Pentatricopeptide repeat domain; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family37.130.6837
29 Mapoly0003s0206 [KOG1082] Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing; [PF05033] Pre-SET motif; [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [GO:0018024] histone-lysine N-methyltransferase activity; [PTHR22884] SET DOMAIN PROTEINS; [GO:0005634] nucleus; [GO:0034968] histone lysine methylation; [PF13912] C2H2-type zinc finger37.470.8112
30 Mapoly0001s0118 [GO:0005515] protein binding; [PF00856] SET domain; [PTHR22884] SET DOMAIN PROTEINS37.750.8047
31 Mapoly0005s0121 [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [KOG0154] RNA-binding protein RBM5 and related proteins, contain G-patch and RRM domains; [PF01585] G-patch domain; [K13094] RNA-binding protein 5/10; [PTHR13948] RNA-BINDING PROTEIN; [GO:0003676] nucleic acid binding; [PTHR13948:SF3] RNA-BINDING PROTEIN; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)39.800.7781
32 Mapoly0009s0011 [PF06650] Protein of unknown function (DUF1162); [PTHR16166] VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13); [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter41.180.7781
33 Mapoly0042s0059 [PTHR16426] UBINUCLEIN/YEMANUCLEIN; [PF08729] HPC2 and ubinuclein domain44.090.7753
34 Mapoly0010s0175 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [K12735] peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8]; [GO:0008270] zinc ion binding; [GO:0000413] protein peptidyl-prolyl isomerization; [PF00098] Zinc knuckle; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [GO:0003676] nucleic acid binding; [KOG0415] Predicted peptidyl prolyl cis-trans isomerase; [PTHR11071:SF156] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)44.630.7919
35 Mapoly0015s0183 [GO:0000922] spindle pole; [PF04130] Spc97 / Spc98 family; [GO:0000226] microtubule cytoskeleton organization; [GO:0005815] microtubule organizing center; [PTHR19302] GAMMA TUBULIN COMPLEX PROTEIN44.830.7114
36 Mapoly0051s0016 [PF13831] PHD-finger; [PF05964] F/Y-rich N-terminus; [GO:0005515] protein binding; [PF13832] PHD-zinc-finger like domain; [PF00856] SET domain; [PTHR13793] PHD FINGER PROTEINS; [PF00855] PWWP domain; [GO:0005634] nucleus; [PF05965] F/Y rich C-terminus45.830.7916
37 Mapoly0011s0057 [PF13837] Myb/SANT-like DNA-binding domain47.180.7591
38 Mapoly0057s0069 [PTHR14571] UNCHARACTERIZED47.350.8006
39 Mapoly0003s0184 [GO:0006396] RNA processing; [GO:0003677] DNA binding; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [K11592] endoribonuclease Dicer [EC:3.1.26.-]; [PF02170] PAZ domain; [3.1.26.-] Endoribonucleases producing 5'-phosphomonoesters.; [PTHR14950] HELICASE-RELATED; [GO:0005515] protein binding; [GO:0016891] endoribonuclease activity, producing 5'-phosphomonoesters; [GO:0016787] hydrolase activity; [PF04851] Type III restriction enzyme, res subunit; [PF03368] Dicer dimerisation domain; [PF00636] Ribonuclease III domain; [GO:0004525] ribonuclease III activity; [PF00271] Helicase conserved C-terminal domain; [PF14709] double strand RNA binding domain from DEAD END PROTEIN 1; [KOG0701] dsRNA-specific nuclease Dicer and related ribonucleases47.740.7695
40 Mapoly0024s0108 [PF13371] Tetratricopeptide repeat; [PTHR23082] TRANSCRIPTION INITIATION FACTOR IIIC (TFIIIC), POLYPEPTIDE 3-RELATED; [GO:0005515] protein binding; [PF13414] TPR repeat; [PF13174] Tetratricopeptide repeat; [KOG2076] RNA polymerase III transcription factor TFIIIC48.000.7305
41 Mapoly0050s0099 [PF10433] Mono-functional DNA-alkylating methyl methanesulfonate N-term; [KOG1897] Damage-specific DNA binding complex, subunit DDB149.750.7441
42 Mapoly0021s0014 [PF07719] Tetratricopeptide repeat; [PTHR15502] CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED; [PTHR15502:SF7] SUBFAMILY NOT NAMED51.500.7777
43 Mapoly0002s0028 [PF00630] Filamin/ABP280 repeat; [GO:0003676] nucleic acid binding; [KOG0146] RNA-binding protein ETR-3 (RRM superfamily); [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)51.870.7725
44 Mapoly0021s0012 [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0006511] ubiquitin-dependent protein catabolic process; [PF02810] SEC-C motif; [KOG1865] Ubiquitin carboxyl-terminal hydrolase; [PTHR24006] FAMILY NOT NAMED; [PF01753] MYND finger52.330.7441
45 Mapoly0099s0003 [GO:0000922] spindle pole; [PF04130] Spc97 / Spc98 family; [GO:0005815] microtubule organizing center; [GO:0000226] microtubule cytoskeleton organization; [PTHR19302] GAMMA TUBULIN COMPLEX PROTEIN52.660.7548
46 Mapoly0025s0094 [PTHR22970] FAMILY NOT NAMED53.670.7003
47 Mapoly0096s0071 -53.670.7378
48 Mapoly0022s0091 [PTHR23339] TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE; [PF14566] Inositol hexakisphosphate54.120.7294
49 Mapoly0057s0099 [KOG4817] Unnamed protein54.610.7945
50 Mapoly0047s0119 [KOG0891] DNA-dependent protein kinase; [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [PF02259] FAT domain; [PF08771] Rapamycin binding domain; [K07203] FKBP12-rapamycin complex-associated protein; [GO:0005515] protein binding; [GO:0008144] drug binding; [PF11865] Domain of unknown function (DUF3385); [PF00454] Phosphatidylinositol 3- and 4-kinase; [PF02260] FATC domain; [PTHR11139] ATAXIA TELANGIECTASIA MUTATED (ATM)-RELATED55.500.7713
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