Guide Gene

Gene ID
Mapoly0078s0024
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR14398] RNA RECOGNITION RRM/RNP DOMAIN; [PTHR14398:SF0] SUBFAMILY NOT NAMED; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0078s0024 [PTHR14398] RNA RECOGNITION RRM/RNP DOMAIN; [PTHR14398:SF0] SUBFAMILY NOT NAMED; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) 0.00 1.0000
1 Mapoly0075s0060 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR15725] ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING; [GO:0046872] metal ion binding2.000.8957
2 Mapoly0077s0055 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11665] DNA helicase INO80 [EC:3.6.4.12]; [PTHR10799:SF213] DNA HELICASE INO80-RELATED; [GO:0016817] hydrolase activity, acting on acid anhydrides; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [PF13892] DNA-binding domain; [KOG0388] SNF2 family DNA-dependent ATPase2.240.9214
3 Mapoly0035s0121 [PF11935] Domain of unknown function (DUF3453); [K06100] symplekin; [KOG1895] mRNA cleavage and polyadenylation factor II complex, subunit PTA1; [PF12295] Symplekin tight junction protein C terminal; [PTHR15245] SYMPLEKIN-RELATED3.740.9041
4 Mapoly0151s0018 [PF00917] MATH domain; [GO:0005515] protein binding; [PTHR24006] FAMILY NOT NAMED3.870.9035
5 Mapoly0011s0138 [PF12717] non-SMC mitotic condensation complex subunit 1; [K13141] integrator complex subunit 4; [PTHR20938] UNCHARACTERIZED; [PTHR20938:SF0] SUBFAMILY NOT NAMED4.470.8934
6 Mapoly0074s0050 [GO:0005524] ATP binding; [K12815] pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [EC:3.6.4.13]; [GO:0004386] helicase activity; [KOG0924] mRNA splicing factor ATP-dependent RNA helicase; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold4.900.8915
7 Mapoly0085s0079 [PF01426] BAH domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0003682] chromatin binding; [PTHR12505] PHD FINGER TRANSCRIPTION FACTOR6.630.8811
8 Mapoly0029s0056 [PTHR24375] FAMILY NOT NAMED; [PF00096] Zinc finger, C2H2 type; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0046872] metal ion binding; [PF13912] C2H2-type zinc finger7.210.8515
9 Mapoly0060s0062 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR10782] ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN; [GO:0008270] zinc ion binding; [PF02891] MIZ/SP-RING zinc finger; [GO:0003676] nucleic acid binding; [PF02037] SAP domain7.480.8848
10 Mapoly0004s0049 [PF13414] TPR repeat; [PF00226] DnaJ domain; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER; [KOG0550] Molecular chaperone (DnaJ superfamily)9.000.8844
11 Mapoly0011s0206 [GO:0005524] ATP binding; [PTHR24031:SF125] SUBFAMILY NOT NAMED; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [KOG0339] ATP-dependent RNA helicase; [K12835] ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding9.490.8844
12 Mapoly0013s0152 [PTHR12436:SF4] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8; [KOG1861] Leucine permease transcriptional regulator; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family10.250.8890
13 Mapoly0094s0004 [GO:0003677] DNA binding; [PTHR22970:SF1] SUBFAMILY NOT NAMED; [PTHR22970] FAMILY NOT NAMED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005622] intracellular10.720.8549
14 Mapoly0035s0133 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation; [PF00097] Zinc finger, C3HC4 type (RING finger); [PTHR23163:SF0] SUBFAMILY NOT NAMED; [6.3.2.19] Ubiquitin--protein ligase.; [K10696] E3 ubiquitin-protein ligase BRE1 [EC:6.3.2.19]; [GO:0046872] metal ion binding; [PTHR23163] RING FINGER PROTEIN-RELATED13.860.8743
15 Mapoly0121s0014 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR23329] TUFTELIN-INTERACTING PROTEIN 11-RELATED; [PF07842] GC-rich sequence DNA-binding factor-like protein; [KOG2184] Tuftelin-interacting protein TIP39, contains G-patch domain; [PF01585] G-patch domain; [PF12457] Tuftelin interacting protein N terminal; [GO:0005634] nucleus; [GO:0003676] nucleic acid binding; [PTHR23329:SF1] TUFTELIN INTERACTING PROTEIN 11; [K13103] tuftelin-interacting protein 1117.030.8494
16 Mapoly0028s0109 [GO:0005524] ATP binding; [PTHR23069] TAT-BINDING HOMOLOG 7; [PTHR23069:SF0] SUBFAMILY NOT NAMED; [GO:0005515] protein binding; [PF00439] Bromodomain; [PF00004] ATPase family associated with various cellular activities (AAA); [KOG0732] AAA+-type ATPase containing the bromodomain17.230.8509
17 Mapoly0006s0231 [KOG0123] Polyadenylate-binding protein (RRM superfamily); [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF07744] SPOC domain; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)17.550.8704
18 Mapoly0007s0173 -17.890.8370
19 Mapoly0002s0125 [PTHR25040] FAMILY NOT NAMED; [PF11926] Domain of unknown function (DUF3444); [PTHR25040:SF79] SUBFAMILY NOT NAMED; [PF00226] DnaJ domain18.970.8569
20 Mapoly0131s0026 [GO:0003677] DNA binding; [K13211] GC-rich sequence DNA-binding factor; [GO:0006355] regulation of transcription, DNA-dependent; [PF07842] GC-rich sequence DNA-binding factor-like protein; [PTHR12214] GC-RICH SEQUENCE DNA-BINDING FACTOR; [GO:0003700] sequence-specific DNA binding transcription factor activity; [GO:0005634] nucleus; [PTHR12214:SF0] SUBFAMILY NOT NAMED20.350.8347
21 Mapoly0079s0055 [PTHR15496] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF12660] Putative zinc-finger of transcription factor IIIC complex; [PTHR15496:SF1] SUBFAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat; [PF12657] Transcription factor IIIC subunit delta N-term21.020.8418
22 Mapoly0091s0046 [PF05641] Agenet domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR24098] FAMILY NOT NAMED23.370.8705
23 Mapoly0005s0162 [GO:0008168] methyltransferase activity; [PTHR13107] KARYOGAMY PROTEIN KAR4-RELATED; [PF05063] MT-A70; [KOG2097] Predicted N6-adenine methylase involved in transcription regulation; [GO:0006139] nucleobase-containing compound metabolic process; [PTHR13107:SF0] SUBFAMILY NOT NAMED24.740.8639
24 Mapoly0030s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED; [KOG1164] Casein kinase (serine/threonine/tyrosine protein kinase)25.100.8562
25 Mapoly0078s0014 [PTHR15237:SF0] SUBFAMILY NOT NAMED; [GO:0006281] DNA repair; [KOG2810] Checkpoint 9-1-1 complex, RAD9 component; [GO:0000077] DNA damage checkpoint; [GO:0030896] checkpoint clamp complex; [GO:0000075] cell cycle checkpoint; [PF04139] Rad9; [PTHR15237] DNA REPAIR PROTEIN RAD926.080.7772
26 Mapoly0021s0057 [PF07303] Occludin homology domain26.270.8692
27 Mapoly0058s0099 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00035] Double-stranded RNA binding motif; [KOG0920] ATP-dependent RNA helicase A; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold26.320.8095
28 Mapoly0187s0019 [PF00855] PWWP domain; [PF12243] CTD kinase subunit gamma CTK3; [PTHR12550] HEPATOMA-DERIVED GROWTH FACTOR-RELATED; [KOG2669] Regulator of nuclear mRNA27.130.8684
29 Mapoly0121s0051 [KOG1003] Actin filament-coating protein tropomyosin27.820.8598
30 Mapoly0160s0011 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation; [PTHR31908] FAMILY NOT NAMED28.140.8544
31 Mapoly0043s0034 [PTHR13233] MICROSPHERULE PROTEIN 1; [GO:0005515] protein binding; [PTHR13233:SF0] SUBFAMILY NOT NAMED; [PF13325] N-terminal region of micro-spherule protein; [PF00498] FHA domain28.280.8436
32 Mapoly0085s0091 [GO:0005524] ATP binding; [KOG0198] MEKK and related serine/threonine protein kinases; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24361] MITOGEN-ACTIVATED KINASE KINASE KINASE28.530.8393
33 Mapoly0026s0003 [GO:0003723] RNA binding; [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [K12818] ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]; [3.6.4.13] RNA helicase.; [PF00575] S1 RNA binding domain; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold28.620.8370
34 Mapoly0011s0050 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR21704] NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED; [KOG1020] Sister chromatid cohesion protein SCC2/Nipped-B; [PF12765] HEAT repeat associated with sister chromatid cohesion; [K06672] cohesin loading factor subunit SCC2; [PF12830] Sister chromatid cohesion C-terminus28.910.8551
35 Mapoly0036s0119 [PF14500] Dos2-interacting transcription regulator of RNA-Pol-II; [PF12460] RNAPII transcription regulator C-terminal; [PTHR12891] DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS1929.240.8353
36 Mapoly0062s0029 [KOG1982] Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p; [PF08652] RAI1 like PD-(D/E)XK nuclease; [PTHR12395:SF9] SUBFAMILY NOT NAMED; [PTHR12395] DOM-3 RELATED29.390.8408
37 Mapoly0066s0036 [PTHR21567:SF9] GB DEF: HYPOTHETICAL PROTEIN AT2G20190; [PF12348] CLASP N terminal; [PF13513] HEAT-like repeat; [PTHR21567] CLASP30.740.8184
38 Mapoly0167s0020 [GO:0003677] DNA binding; [GO:0003917] DNA topoisomerase type I activity; [PF02919] Eukaryotic DNA topoisomerase I, DNA binding fragment; [KOG0981] DNA topoisomerase I; [GO:0006265] DNA topological change; [PF01028] Eukaryotic DNA topoisomerase I, catalytic core; [GO:0003918] DNA topoisomerase type II (ATP-hydrolyzing) activity; [GO:0005694] chromosome; [PTHR10290] DNA TOPOISOMERASE I; [PF14370] C-terminal topoisomerase domain; [K03163] DNA topoisomerase I [EC:5.99.1.2]; [5.99.1.2] DNA topoisomerase.30.940.8423
39 Mapoly0035s0137 [GO:0005643] nuclear pore; [PTHR10350:SF6] NUCLEOPORIN 155; [PF03177] Non-repetitive/WGA-negative nucleoporin C-terminal; [K14312] nuclear pore complex protein Nup155; [KOG1900] Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170); [GO:0006913] nucleocytoplasmic transport; [PF08801] Nup133 N terminal like; [GO:0017056] structural constituent of nuclear pore; [PTHR10350] NUCLEAR PORE COMPLEX PROTEIN NUP15532.020.8366
40 Mapoly0057s0099 [KOG4817] Unnamed protein32.620.8584
41 Mapoly0016s0118 [PTHR11246:SF1] PRE-MRNA SPLICING FACTOR; [PTHR11246] PRE-MRNA SPLICING FACTOR; [PF06424] PRP1 splicing factor, N-terminal; [KOG0495] HAT repeat protein; [PF13428] Tetratricopeptide repeat; [K12855] pre-mRNA-processing factor 6; [GO:0005634] nucleus; [GO:0000398] mRNA splicing, via spliceosome32.740.8137
42 Mapoly0096s0060 [PF15613] WSTF, HB1, Itc1p, MBD9 motif 2; [PTHR15546] FAMILY NOT NAMED; [PF10537] ATP-utilising chromatin assembly and remodelling N-terminal; [PF02791] DDT domain32.940.8440
43 Mapoly0119s0054 [GO:0008641] small protein activating enzyme activity; [GO:0005524] ATP binding; [PF09358] Ubiquitin-activating enzyme e1 C-terminal domain; [PF00899] ThiF family; [PF02134] Repeat in ubiquitin-activating (UBA) protein; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [PF10585] Ubiquitin-activating enzyme active site; [GO:0006464] cellular protein modification process; [PTHR10953:SF4] UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 1 (UBIQUITIN-ACTIVATING ENZYME E1)33.240.8168
44 Mapoly0202s0013 [PF12937] F-box-like; [PF13516] Leucine Rich repeat; [GO:0005515] protein binding; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN; [KOG4341] F-box protein containing LRR35.070.8471
45 Mapoly0077s0054 [PF07919] Gryzun, putative trafficking through Golgi; [PTHR14374] FOIE GRAS; [PF11817] Foie gras liver health family 135.690.7995
46 Mapoly0170s0020 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [GO:0005681] spliceosomal complex; [PTHR10887:SF5] INTRON-BINDING PROTEIN AQUARIUS; [PF13086] AAA domain; [GO:0000398] mRNA splicing, via spliceosome; [K12874] intron-binding protein aquarius; [PF13087] AAA domain; [KOG1806] DEAD box containing helicases37.420.8530
47 Mapoly0003s0245 -39.240.7912
48 Mapoly0057s0069 [PTHR14571] UNCHARACTERIZED39.600.8503
49 Mapoly0001s0487 [PTHR16216:SF2] SUBFAMILY NOT NAMED; [PTHR16216] FAMILY NOT NAMED41.130.8346
50 Mapoly0001s0121 [PF00641] Zn-finger in Ran binding protein and others; [PTHR23238] RNA BINDING PROTEIN; [KOG1995] Conserved Zn-finger protein; [GO:0008270] zinc ion binding41.270.7793
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