Guide Gene

Gene ID
Mapoly0029s0126
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain

Coexpressed Gene Network

Gene ID Description Information
Mapoly0003s0124 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [PF13086] AAA domain; [PF13087] AAA domain; [KOG1801] tRNA-splicing endonuclease positive effector (SEN1)
Mapoly0003s0245 -
Mapoly0005s0060 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11367] chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12]; [PF13907] Domain of unknown function (DUF4208); [PTHR10799:SF70] CHROMODOMAIN HELICASE DNA BINDING PROTEIN; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [KOG0384] Chromodomain-helicase DNA-binding protein
Mapoly0011s0050 [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR21704] NIPPED-B-LIKE PROTEIN (DELANGIN) SCC2-RELATED; [KOG1020] Sister chromatid cohesion protein SCC2/Nipped-B; [PF12765] HEAT repeat associated with sister chromatid cohesion; [K06672] cohesin loading factor subunit SCC2; [PF12830] Sister chromatid cohesion C-terminus
Mapoly0014s0099 [PTHR22100] FAMILY NOT NAMED; [PF07814] Wings apart-like protein regulation of heterochromatin
Mapoly0029s0126 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain
Mapoly0030s0125 [PF08429] PLU-1-like protein; [GO:0003677] DNA binding; [GO:0055114] oxidation-reduction process; [KOG1246] DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF02373] JmjC domain, hydroxylase; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10694:SF8] RETINOBLASTOMA BINDING PROTEIN-RELATED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005634] nucleus; [GO:0005622] intracellular; [PF02375] jmjN domain; [PTHR10694] JUMONJI DOMAIN CONTAINING PROTEIN; [PF02928] C5HC2 zinc finger
Mapoly0034s0048 [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [PTHR10943:SF2] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 1 (26S PROTEASOME REGULATORY SUBUNIT RPN2); [KOG2062] 26S proteasome regulatory complex, subunit RPN2/PSMD1; [K03032] 26S proteasome regulatory subunit N2; [PF01851] Proteasome/cyclosome repeat; [PF13646] HEAT repeats
Mapoly0035s0121 [PF11935] Domain of unknown function (DUF3453); [K06100] symplekin; [KOG1895] mRNA cleavage and polyadenylation factor II complex, subunit PTA1; [PF12295] Symplekin tight junction protein C terminal; [PTHR15245] SYMPLEKIN-RELATED
Mapoly0036s0119 [PF14500] Dos2-interacting transcription regulator of RNA-Pol-II; [PF12460] RNAPII transcription regulator C-terminal; [PTHR12891] DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19
Mapoly0037s0011 [PF12842] Domain of unknown function (DUF3819); [PF04054] CCR4-Not complex component, Not1; [PTHR13162:SF8] SUBFAMILY NOT NAMED; [PTHR13162] CCR4-NOT TRANSCRIPTION COMPLEX; [K12604] CCR4-NOT transcription complex subunit 1
Mapoly0043s0055 [PTHR31115] FAMILY NOT NAMED; [PF10198] Histone acetyltransferases subunit 3
Mapoly0059s0106 [GO:0003677] DNA binding; [PF12937] F-box-like; [GO:0005524] ATP binding; [GO:0005515] protein binding; [GO:0008270] zinc ion binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG1001] Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [PF07496] CW-type Zinc Finger
Mapoly0077s0055 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11665] DNA helicase INO80 [EC:3.6.4.12]; [PTHR10799:SF213] DNA HELICASE INO80-RELATED; [GO:0016817] hydrolase activity, acting on acid anhydrides; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [PF13892] DNA-binding domain; [KOG0388] SNF2 family DNA-dependent ATPase
Mapoly0079s0055 [PTHR15496] FAMILY NOT NAMED; [GO:0005515] protein binding; [PF12660] Putative zinc-finger of transcription factor IIIC complex; [PTHR15496:SF1] SUBFAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat; [PF12657] Transcription factor IIIC subunit delta N-term
Mapoly0110s0011 [GO:0006357] regulation of transcription from RNA polymerase II promoter; [KOG1875] Thyroid hormone receptor-associated coactivator complex component (TRAP170); [PTHR12809:SF2] SUBFAMILY NOT NAMED; [PTHR12809] MEDIATOR COMPLEX SUBUNIT; [PF08638] Mediator complex subunit MED14; [GO:0001104] RNA polymerase II transcription cofactor activity; [GO:0016592] mediator complex
Mapoly0119s0054 [GO:0008641] small protein activating enzyme activity; [GO:0005524] ATP binding; [PF09358] Ubiquitin-activating enzyme e1 C-terminal domain; [PF00899] ThiF family; [PF02134] Repeat in ubiquitin-activating (UBA) protein; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [PF10585] Ubiquitin-activating enzyme active site; [GO:0006464] cellular protein modification process; [PTHR10953:SF4] UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 1 (UBIQUITIN-ACTIVATING ENZYME E1)
Mapoly0136s0010 [K03028] 26S proteasome regulatory subunit N1; [GO:0000502] proteasome complex; [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [KOG2005] 26S proteasome regulatory complex, subunit RPN1/PSMD2; [PTHR10943:SF1] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 (26S PROTEASOME REGULATORY SUBUNIT RPN1); [GO:0030234] enzyme regulator activity; [PF01851] Proteasome/cyclosome repeat; [GO:0042176] regulation of protein catabolic process
Mapoly0176s0001 [PTHR13793] PHD FINGER PROTEINS; [PF10513] Enhancer of polycomb-like
Mapoly0190s0006 [KOG3794] CBF1-interacting corepressor CIR and related proteins; [PF10197] N-terminal domain of CBF1 interacting co-repressor CIR
Mapoly0202s0013 [PF12937] F-box-like; [PF13516] Leucine Rich repeat; [GO:0005515] protein binding; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN; [KOG4341] F-box protein containing LRR