Guide Gene

Gene ID
Mapoly0029s0117
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[KOG1344] Predicted histone deacetylase; [PF00850] Histone deacetylase domain; [PTHR10625] HISTONE DEACETYLASE

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0029s0117 [KOG1344] Predicted histone deacetylase; [PF00850] Histone deacetylase domain; [PTHR10625] HISTONE DEACETYLASE 0.00 1.0000
1 Mapoly0066s0007 [PF00291] Pyridoxal-phosphate dependent enzyme; [KOG1252] Cystathionine beta-synthase and related enzymes; [PTHR10314] SER/THR DEHYDRATASE, TRP SYNTHASE1.000.8334
2 Mapoly0095s0045 [PF00475] Imidazoleglycerol-phosphate dehydratase; [PTHR23133] IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7; [GO:0000105] histidine biosynthetic process; [GO:0004424] imidazoleglycerol-phosphate dehydratase activity; [4.2.1.19] Imidazoleglycerol-phosphate dehydratase.; [KOG3143] Imidazoleglycerol-phosphate dehydratase; [K01693] imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]1.410.8240
3 Mapoly0023s0019 [PF12710] haloacid dehalogenase-like hydrolase; [KOG1615] Phosphoserine phosphatase; [PTHR10000] PHOSPHOSERINE PHOSPHATASE; [3.1.3.3] Phosphoserine phosphatase.; [K01079] phosphoserine phosphatase [EC:3.1.3.3]3.460.8021
4 Mapoly0159s0003 -6.480.7309
5 Mapoly0186s0018 [GO:0005506] iron ion binding; [KOG3052] Cytochrome c1; [PF02167] Cytochrome C1 family; [GO:0009055] electron carrier activity; [GO:0020037] heme binding; [PTHR10266] CYTOCHROME C1; [K00413] ubiquinol-cytochrome c reductase cytochrome c1 subunit [EC:1.10.2.2]; [1.10.2.2] Ubiquinol--cytochrome-c reductase.7.420.7369
6 Mapoly0036s0025 [PTHR21377] UNCHARACTERIZED; [PF06916] Protein of unknown function (DUF1279); [PTHR21377:SF2] UNCHARACTERIZED10.680.7174
7 Mapoly0027s0096 [PF01430] Hsp33 protein; [GO:0005737] cytoplasm; [PTHR30111] HEAT-SHOCK PROTEIN HSP33; [GO:0006457] protein folding; [GO:0051082] unfolded protein binding11.140.7956
8 Mapoly0015s0052 [KOG2467] Glycine/serine hydroxymethyltransferase; [GO:0006544] glycine metabolic process; [2.1.2.1] Glycine hydroxymethyltransferase.; [GO:0006563] L-serine metabolic process; [K00600] glycine hydroxymethyltransferase [EC:2.1.2.1]; [PF00464] Serine hydroxymethyltransferase; [GO:0004372] glycine hydroxymethyltransferase activity; [PTHR11680] SERINE HYDROXYMETHYLTRANSFERASE13.230.7615
9 Mapoly0014s0161 [PTHR23029] PHOSPHOGLYCERATE MUTASE; [KOG0235] Phosphoglycerate mutase; [PF00300] Histidine phosphatase superfamily (branch 1)14.970.6795
10 Mapoly0016s0142 [GO:0005524] ATP binding; [KOG2355] Predicted ABC-type transport, ATPase component/CCR4 associated factor; [K12608] CCR4-NOT complex subunit CAF16; [GO:0016887] ATPase activity; [PTHR12847:SF6] SUBFAMILY NOT NAMED; [PTHR12847] ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATED; [PF00005] ABC transporter19.490.6960
11 Mapoly0031s0040 [PF00206] Lyase; [4.3.2.2] Adenylosuccinate lyase.; [K01756] adenylosuccinate lyase [EC:4.3.2.2]; [KOG2700] Adenylosuccinate lyase; [PF08328] Adenylosuccinate lyase C-terminal; [GO:0004018] N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity; [PTHR11444] ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE; [GO:0006188] IMP biosynthetic process19.750.7413
12 Mapoly0080s0008 [PF01757] Acyltransferase family; [GO:0016747] transferase activity, transferring acyl groups other than amino-acyl groups19.750.6386
13 Mapoly0021s0074 -19.900.7648
14 Mapoly0071s0065 [PF04134] Protein of unknown function, DUF39320.170.6964
15 Mapoly0003s0168 [GO:0005515] protein binding; [PF00043] Glutathione S-transferase, C-terminal domain; [PF02798] Glutathione S-transferase, N-terminal domain; [KOG0867] Glutathione S-transferase; [PTHR11260] GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING21.820.7045
16 Mapoly0007s0131 -23.320.7254
17 Mapoly0089s0006 [PF03781] Sulfatase-modifying factor enzyme 1; [PTHR30468] ALPHA-KETOGLUTARATE-DEPENDENT SULFONATE DIOXYGENASE; [PF12867] DinB superfamily; [PF10017] Histidine-specific methyltransferase, SAM-dependent24.000.7258
18 Mapoly0116s0019 -25.460.7050
19 Mapoly0064s0088 [PTHR10229:SF0] GTP-BINDING PROTEIN HFLX; [PF01926] 50S ribosome-binding GTPase; [KOG0410] Predicted GTP binding protein; [PTHR10229] GTP-BINDING PROTEIN HFLX; [PF13167] GTP-binding GTPase N-terminal; [K03665] GTP-binding protein HflX; [GO:0005525] GTP binding25.630.7435
20 Mapoly0091s0025 [PF00574] Clp protease; [PTHR10381] ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; [KOG0840] ATP-dependent Clp protease, proteolytic subunit27.020.7650
21 Mapoly0090s0044 [PTHR13362] MITOCHONDRIAL RIBOSOMAL PROTEIN S33; [KOG4844] Mitochondrial ribosomal protein S27; [PF08293] Mitochondrial ribosomal subunit S2727.750.6989
22 Mapoly0037s0067 [PF07719] Tetratricopeptide repeat28.460.7287
23 Mapoly0072s0003 [GO:0000287] magnesium ion binding; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0004826] phenylalanine-tRNA ligase activity; [6.1.1.20] Phenylalanine--tRNA ligase.; [GO:0043039] tRNA aminoacylation; [GO:0006432] phenylalanyl-tRNA aminoacylation; [K01889] phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20]; [PTHR11538] PHENYLALANYL-TRNA SYNTHETASE; [GO:0000049] tRNA binding; [GO:0008033] tRNA processing; [PF03147] Ferredoxin-fold anticodon binding domain; [GO:0004812] aminoacyl-tRNA ligase activity; [KOG2783] Phenylalanyl-tRNA synthetase; [PF01409] tRNA synthetases class II core domain (F)29.660.7472
24 Mapoly0011s0175 [GO:0016020] membrane; [GO:0006814] sodium ion transport; [GO:0055085] transmembrane transport; [PTHR10283] SOLUTE CARRIER FAMILY 13 MEMBER; [PF00939] Sodium:sulfate symporter transmembrane region; [GO:0005215] transporter activity30.300.6827
25 Mapoly0248s0001 -30.630.6691
26 Mapoly0107s0036 [PTHR11659] GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED; [PF02637] GatB domain; [GO:0016874] ligase activity; [PTHR11659:SF1] GLUTAMYL-TRNA AMIDOTRANSFERASE SUBUNIT B; [GO:0016884] carbon-nitrogen ligase activity, with glutamine as amido-N-donor; [6.3.5.7] Glutaminyl-tRNA synthase (glutamine-hydrolyzing).; [PF02934] GatB/GatE catalytic domain; [6.3.5.6] Asparaginyl-tRNA synthase (glutamine-hydrolyzing).; [KOG2438] Glutamyl-tRNA amidotransferase subunit B; [K02434] aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]31.940.7354
27 Mapoly0026s0004 -34.060.6758
28 Mapoly0055s0009 [KOG1722] 60s ribosomal protein L24; [K02896] large subunit ribosomal protein L24e; [PF01246] Ribosomal protein L24e; [PTHR10792] 60S RIBOSOMAL PROTEIN L2434.990.7253
29 Mapoly0001s0093 [PF05684] Protein of unknown function (DUF819)35.990.6148
30 Mapoly0138s0001 [PF07080] Protein of unknown function (DUF1348); [PTHR31757] FAMILY NOT NAMED; [PTHR31757:SF0] SUBFAMILY NOT NAMED36.220.6224
31 Mapoly0041s0126 [PTHR32098] FAMILY NOT NAMED; [GO:0016705] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen; [GO:0016117] carotenoid biosynthetic process; [K14606] lycopene cyclase CruP; [PF05834] Lycopene cyclase protein38.680.6343
32 Mapoly0060s0093 [PTHR21256] HISTIDINOL DEHYDROGENASE (HDH); [GO:0055114] oxidation-reduction process; [K00013] histidinol dehydrogenase [EC:1.1.1.23]; [KOG2697] Histidinol dehydrogenase; [GO:0000105] histidine biosynthetic process; [GO:0008270] zinc ion binding; [GO:0004399] histidinol dehydrogenase activity; [PF00815] Histidinol dehydrogenase; [GO:0051287] NAD binding; [1.1.1.23] Histidinol dehydrogenase.; [PTHR21256:SF2] HISTIDINOL DEHYDROGENASE (HDH)40.400.6850
33 Mapoly0007s0165 -40.990.6676
34 Mapoly0173s0009 [GO:0005524] ATP binding; [K00872] homoserine kinase [EC:2.7.1.39]; [PTHR20861] HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE; [PTHR20861:SF1] HOMOSERINE KINASE; [PF08544] GHMP kinases C terminal; [2.7.1.39] Homoserine kinase.; [PF00288] GHMP kinases N terminal domain; [KOG1537] Homoserine kinase41.820.6847
35 Mapoly0010s0169 [PTHR31184] FAMILY NOT NAMED; [KOG3450] Huntingtin interacting protein HYPK42.710.7010
36 Mapoly0004s0160 [KOG1577] Aldo/keto reductase family proteins; [PTHR11732] ALDO/KETO REDUCTASE; [PF00248] Aldo/keto reductase family42.950.6951
37 Mapoly0028s0048 [GO:0004106] chorismate mutase activity; [5.4.99.5] Chorismate mutase.; [GO:0046417] chorismate metabolic process; [KOG0795] Chorismate mutase; [GO:0009073] aromatic amino acid family biosynthetic process; [PTHR21145:SF0] SUBFAMILY NOT NAMED; [PF01817] Chorismate mutase type II; [K01850] chorismate mutase [EC:5.4.99.5]; [PTHR21145] CHORISMATE MUTASE43.630.5955
38 Mapoly0010s0072 [PTHR10196] SUGAR KINASE; [PF02782] FGGY family of carbohydrate kinases, C-terminal domain; [GO:0016773] phosphotransferase activity, alcohol group as acceptor; [GO:0005975] carbohydrate metabolic process; [PF00370] FGGY family of carbohydrate kinases, N-terminal domain45.390.7151
39 Mapoly0006s0177 [GO:0033179] proton-transporting V-type ATPase, V0 domain; [3.6.3.14] H(+)-transporting two-sector ATPase.; [PF01992] ATP synthase (C/AC39) subunit; [KOG2957] Vacuolar H+-ATPase V0 sector, subunit d; [GO:0015078] hydrogen ion transmembrane transporter activity; [PTHR11028] VACUOLAR ATP SYNTHASE SUBUNIT AC39; [GO:0015991] ATP hydrolysis coupled proton transport; [K02146] V-type H+-transporting ATPase subunit AC39 [EC:3.6.3.14]47.480.7144
40 Mapoly0054s0007 [GO:0008168] methyltransferase activity; [PF03492] SAM dependent carboxyl methyltransferase; [PTHR31009] S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN47.840.7150
41 Mapoly0114s0013 -48.520.6457
42 Mapoly0098s0024 [PTHR12735:SF6] BSL5715 PROTEIN; [PTHR12735] BOLA-LIKE PROTEIN-RELATED; [KOG3348] BolA (bacterial stress-induced morphogen)-related protein; [PF01722] BolA-like protein49.960.7112
43 Mapoly0003s0273 [PF02769] AIR synthase related protein, C-terminal domain; [PTHR10520] TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED; [6.3.3.1] Phosphoribosylformylglycinamidine cyclo-ligase.; [K01933] phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1]; [PF00586] AIR synthase related protein, N-terminal domain; [GO:0003824] catalytic activity; [PTHR10520:SF22] PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE52.990.7076
44 Mapoly0012s0185 [GO:0055114] oxidation-reduction process; [GO:0009396] folic acid-containing compound biosynthetic process; [GO:0004488] methylenetetrahydrofolate dehydrogenase (NADP+) activity; [PTHR10025] TETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE FAMILY MEMBER; [PF02882] Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; [PF00763] Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; [GO:0003824] catalytic activity; [KOG0089] Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase53.720.6958
45 Mapoly0045s0105 [3.5.4.25] GTP cyclohydrolase II.; [GO:0003935] GTP cyclohydrolase II activity; [GO:0009231] riboflavin biosynthetic process; [K14652] 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25]; [4.1.99.12] 3,4-dihydroxy-2-butanone-4-phosphate synthase.; [KOG1284] Bifunctional GTP cyclohydrolase II/3,4-dihydroxy-2butanone-4-phosphate synthase; [PTHR21327] GTP CYCLOHYDROLASE II-RELATED; [PF00926] 3,4-dihydroxy-2-butanone 4-phosphate synthase; [GO:0008686] 3,4-dihydroxy-2-butanone-4-phosphate synthase activity; [PF00925] GTP cyclohydrolase II54.680.6906
46 Mapoly0010s0061 [PF00902] Sec-independent protein translocase protein (TatC); [GO:0016021] integral to membrane; [PTHR30371] SEC-INDEPENDENT PROTEIN TRANSLOCASE PROTEIN TATC; [K03118] sec-independent protein translocase protein TatC55.050.7015
47 Mapoly0016s0014 [K03635] molybdopterin synthase catalytic subunit [EC:2.-.-.-]; [PTHR23404:SF2] MOLYBDOPTERIN SYNTHASE LARGE SUBUNIT 2; [GO:0006777] Mo-molybdopterin cofactor biosynthetic process; [PTHR23404] MOLYBDOPTERIN SYNTHASE RELATED; [KOG3307] Molybdopterin converting factor subunit 2; [PF02391] MoaE protein; [2.-.-.-] Transferases.55.400.6541
48 Mapoly0061s0140 [KOG2972] Uncharacterized conserved protein; [PTHR12532:SF0] SUBFAMILY NOT NAMED; [PTHR12532] UNCHARACTERIZED; [PF01709] Transcriptional regulator55.450.7093
49 Mapoly0052s0094 [PF01512] Respiratory-chain NADH dehydrogenase 51 Kd subunit; [GO:0016651] oxidoreductase activity, acting on NAD(P)H; [PF10589] NADH-ubiquinone oxidoreductase-F iron-sulfur binding region; [GO:0055114] oxidation-reduction process; [PF10531] SLBB domain; [1.6.99.3] NADH dehydrogenase.; [GO:0051539] 4 iron, 4 sulfur cluster binding; [1.6.5.3] NADH:ubiquinone reductase (H(+)-translocating).; [KOG2658] NADH:ubiquinone oxidoreductase, NDUFV1/51kDa subunit; [PTHR11780] NADH-UBIQUINONE OXIDOREDUCTASE FLAVOPROTEIN 1 (NDUFV1); [K03942] NADH dehydrogenase (ubiquinone) flavoprotein 1 [EC:1.6.5.3 1.6.99.3]57.750.6442
50 Mapoly0051s0032 [PTHR32060] FAMILY NOT NAMED; [PF03572] Peptidase family S41; [PF00595] PDZ domain (Also known as DHR or GLGF); [GO:0008236] serine-type peptidase activity; [GO:0005515] protein binding; [GO:0006508] proteolysis58.920.7013
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