Guide Gene

Gene ID
Mapoly0026s0029
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF13857] Ankyrin repeats (many copies); [PF12796] Ankyrin repeats (3 copies); [PTHR24198] ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0026s0029 [PF13857] Ankyrin repeats (many copies); [PF12796] Ankyrin repeats (3 copies); [PTHR24198] ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN 0.00 1.0000
1 Mapoly0170s0020 [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [GO:0005681] spliceosomal complex; [PTHR10887:SF5] INTRON-BINDING PROTEIN AQUARIUS; [PF13086] AAA domain; [GO:0000398] mRNA splicing, via spliceosome; [K12874] intron-binding protein aquarius; [PF13087] AAA domain; [KOG1806] DEAD box containing helicases9.540.8329
2 Mapoly0076s0060 [PTHR12389] ZINC FINGER PROTEIN 294; [PF11793] FANCL C-terminal domain11.490.8216
3 Mapoly0173s0010 [GO:0005524] ATP binding; [PF09262] Peroxisome biogenesis factor 1, N-terminal; [GO:0005777] peroxisome; [PTHR23077:SF12] PEROXISOME BIOGENESIS FACTOR 1 (PEROXIN-1); [GO:0006625] protein targeting to peroxisome; [GO:0005778] peroxisomal membrane; [GO:0007031] peroxisome organization; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23077] AAA-FAMILY ATPASE; [GO:0042623] ATPase activity, coupled; [KOG0735] AAA+-type ATPase; [K13338] peroxin-111.830.7134
4 Mapoly0019s0056 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family13.530.8186
5 Mapoly0050s0007 [PTHR20959] UNCHARACTERIZED; [PTHR20959:SF1] gb def: Hypothetical protein SPBC20F10.08c17.200.7665
6 Mapoly0007s0176 [GO:0005847] mRNA cleavage and polyadenylation specificity factor complex; [K14402] cleavage and polyadenylation specificity factor subunit 2; [GO:0006378] mRNA polyadenylation; [KOG1135] mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit); [PF07521] RNA-metabolising metallo-beta-lactamase; [PTHR11203] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR; [PF13299] Cleavage and polyadenylation factor 2 C-terminal; [PTHR11203:SF5] CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR, 100 KDA SUBUNIT; [PF10996] Beta-Casp domain; [GO:0006379] mRNA cleavage18.170.7868
7 Mapoly0075s0087 [PTHR31576] FAMILY NOT NAMED18.810.8053
8 Mapoly0051s0017 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376:SF31] OS04G0572600 PROTEIN; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [K03018] DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]; [GO:0032549] ribonucleoside binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [KOG0261] RNA polymerase III, large subunit19.700.8127
9 Mapoly0036s0119 [PF14500] Dos2-interacting transcription regulator of RNA-Pol-II; [PF12460] RNAPII transcription regulator C-terminal; [PTHR12891] DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS1924.330.7995
10 Mapoly0169s0023 [PTHR16274] NUCLEOLAR PROTEIN 8; [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)24.900.8103
11 Mapoly0131s0026 [GO:0003677] DNA binding; [K13211] GC-rich sequence DNA-binding factor; [GO:0006355] regulation of transcription, DNA-dependent; [PF07842] GC-rich sequence DNA-binding factor-like protein; [PTHR12214] GC-RICH SEQUENCE DNA-BINDING FACTOR; [GO:0003700] sequence-specific DNA binding transcription factor activity; [GO:0005634] nucleus; [PTHR12214:SF0] SUBFAMILY NOT NAMED29.150.7853
12 Mapoly0089s0054 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family31.020.7900
13 Mapoly0005s0269 [PF13855] Leucine rich repeat; [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [KOG0192] Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs; [PTHR24359] SERINE/THREONINE-PROTEIN KINASE SBK1; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [PF00560] Leucine Rich Repeat; [GO:0006468] protein phosphorylation; [PF14381] Ethylene-responsive protein kinase Le-CTR132.030.7984
14 Mapoly0072s0074 [GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [KOG2140] Uncharacterized conserved protein; [PTHR18034] CELL CYCLE CONTROL PROTEIN CWF22-RELATED; [PTHR18034:SF3] CELL CYCLE CONTROL PROTEIN CWF22; [K13100] pre-mRNA-splicing factor CWC22; [PF02847] MA3 domain36.760.8011
15 Mapoly0306s0002 [KOG1988] Uncharacterized conserved protein; [K13144] integrator complex subunit 7; [PTHR13322] C1ORF73 PROTEIN; [PTHR13322:SF2] SUBFAMILY NOT NAMED38.410.7810
16 Mapoly0084s0050 [PTHR10751] GUANYLATE BINDING PROTEIN; [PF02263] Guanylate-binding protein, N-terminal domain; [GO:0003924] GTPase activity; [GO:0005525] GTP binding39.520.7929
17 Mapoly0029s0126 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain40.100.7911
18 Mapoly0085s0035 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR23329] TUFTELIN-INTERACTING PROTEIN 11-RELATED; [PF07842] GC-rich sequence DNA-binding factor-like protein; [KOG2184] Tuftelin-interacting protein TIP39, contains G-patch domain; [PF01585] G-patch domain; [PF12457] Tuftelin interacting protein N terminal; [GO:0005634] nucleus; [GO:0003676] nucleic acid binding; [PTHR23329:SF1] TUFTELIN INTERACTING PROTEIN 11; [K13103] tuftelin-interacting protein 1142.210.7852
19 Mapoly0122s0038 [GO:0004176] ATP-dependent peptidase activity; [PTHR23327] RING FINGER PROTEIN 127; [PF02190] ATP-dependent protease La (LON) domain; [GO:0006508] proteolysis; [PTHR23327:SF0] SUBFAMILY NOT NAMED43.700.7949
20 Mapoly0125s0016 [GO:0005737] cytoplasm; [GO:0009058] biosynthetic process; [K01892] histidyl-tRNA synthetase [EC:6.1.1.21]; [GO:0016841] ammonia-lyase activity; [PF00221] Aromatic amino acid lyase; [PTHR11476:SF1] HISTIDYL-TRNA SYNTHETASE; [PF03129] Anticodon binding domain; [PTHR11476] HISTIDYL-TRNA SYNTHETASE; [PF13393] Histidyl-tRNA synthetase; [KOG1936] Histidyl-tRNA synthetase; [6.1.1.21] Histidine--tRNA ligase.46.300.7868
21 Mapoly0053s0083 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [KOG0262] RNA polymerase I, large subunit; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [K02999] DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [PTHR19376:SF11] DNA-DIRECTED RNA POLYMERASE I LARGEST SUBUNIT50.400.7843
22 Mapoly0028s0111 [PF07797] Protein of unknown function (DUF1639)50.560.7476
23 Mapoly0041s0109 [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family51.580.7880
24 Mapoly0075s0033 -54.050.7810
25 Mapoly0077s0055 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11665] DNA helicase INO80 [EC:3.6.4.12]; [PTHR10799:SF213] DNA HELICASE INO80-RELATED; [GO:0016817] hydrolase activity, acting on acid anhydrides; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [PF13892] DNA-binding domain; [KOG0388] SNF2 family DNA-dependent ATPase55.480.7851
26 Mapoly0138s0007 [PTHR10233:SF14] TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTA; [GO:0044237] cellular metabolic process; [KOG1467] Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2); [PTHR10233] TRANSLATION INITIATION FACTOR EIF-2B; [PF01008] Initiation factor 2 subunit family; [K03680] translation initiation factor eIF-2B delta subunit56.750.7788
27 Mapoly0026s0003 [GO:0003723] RNA binding; [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [K12818] ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]; [3.6.4.13] RNA helicase.; [PF00575] S1 RNA binding domain; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold56.920.7691
28 Mapoly0049s0043 [PTHR15682] FAMILY NOT NAMED; [PF10441] Urb2/Npa2 family57.690.7796
29 Mapoly0035s0121 [PF11935] Domain of unknown function (DUF3453); [K06100] symplekin; [KOG1895] mRNA cleavage and polyadenylation factor II complex, subunit PTA1; [PF12295] Symplekin tight junction protein C terminal; [PTHR15245] SYMPLEKIN-RELATED61.510.7815
30 Mapoly0009s0155 [K11886] proteasome component ECM29; [PTHR23346:SF19] SUBFAMILY NOT NAMED; [PF13001] Proteasome stabiliser; [PTHR23346] TRANSLATIONAL ACTIVATOR GCN1-RELATED; [KOG0915] Uncharacterized conserved protein61.970.7810
31 Mapoly0001s0447 [KOG0925] mRNA splicing factor ATP-dependent RNA helicase; [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [K12820] pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13]; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold62.450.7653
32 Mapoly0028s0046 [GO:0005643] nuclear pore; [KOG0845] Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116); [GO:0006810] transport; [PF12110] Nuclear protein 96; [PF04096] Nucleoporin autopeptidase; [PTHR23198] NUCLEOPORIN63.170.7821
33 Mapoly0025s0013 [GO:0010468] regulation of gene expression; [GO:0005777] peroxisome; [PTHR14379] LIMKAIN B (LKAP); [PF01936] NYN domain; [PF12872] OST-HTH/LOTUS domain63.950.7611
34 Mapoly0119s0054 [GO:0008641] small protein activating enzyme activity; [GO:0005524] ATP binding; [PF09358] Ubiquitin-activating enzyme e1 C-terminal domain; [PF00899] ThiF family; [PF02134] Repeat in ubiquitin-activating (UBA) protein; [PTHR10953] UBIQUITIN-ACTIVATING ENZYME E1; [GO:0003824] catalytic activity; [PF10585] Ubiquitin-activating enzyme active site; [GO:0006464] cellular protein modification process; [PTHR10953:SF4] UBIQUITIN-LIKE MODIFIER-ACTIVATING ENZYME 1 (UBIQUITIN-ACTIVATING ENZYME E1)64.540.7581
35 Mapoly0105s0045 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PTHR12029] RNA METHYLTRANSFERASE; [PF00588] SpoU rRNA Methylase family; [PTHR12029:SF11] 23S RRNA METHYLTRANSFERASE; [GO:0008173] RNA methyltransferase activity; [KOG0839] RNA Methylase, SpoU family65.000.7506
36 Mapoly0075s0060 [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PTHR15725] ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING; [GO:0046872] metal ion binding66.180.7751
37 Mapoly0066s0020 [PF13812] Pentatricopeptide repeat domain; [PF12854] PPR repeat; [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family69.480.7489
38 Mapoly0172s0015 [PTHR13471] TETRATRICOPEPTIDE-LIKE HELICAL; [PF08424] NRDE-2, necessary for RNA interference72.660.7632
39 Mapoly0122s0055 [GO:0031625] ubiquitin protein ligase binding; [PTHR11932:SF5] ANAPHASE-PROMOTING COMPLEX SUBUNIT 2; [GO:0031461] cullin-RING ubiquitin ligase complex; [GO:0006511] ubiquitin-dependent protein catabolic process; [K03349] anaphase-promoting complex subunit 2; [KOG2165] Anaphase-promoting complex (APC), subunit 2; [PTHR11932] CULLIN; [PF00888] Cullin family; [PF08672] Anaphase promoting complex (APC) subunit 274.420.7783
40 Mapoly0021s0057 [PF07303] Occludin homology domain75.300.7796
41 Mapoly0013s0047 [KOG2147] Nucleolar protein involved in 40S ribosome biogenesis; [PTHR23183:SF0] SUBFAMILY NOT NAMED; [PTHR23183] NOP14; [PF03715] Noc2p family; [GO:0032040] small-subunit processome; [PF04147] Nop14-like family77.140.7712
42 Mapoly0189s0001 [GO:0008168] methyltransferase activity; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process; [PTHR13069] UNCHARACTERIZED; [KOG1331] Predicted methyltransferase; [PF13532] 2OG-Fe(II) oxygenase superfamily78.990.7421
43 Mapoly0008s0193 [PTHR24031:SF54] SUBFAMILY NOT NAMED; [GO:0005524] ATP binding; [KOG0343] RNA Helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF13959] Domain of unknown function (DUF4217)79.130.7744
44 Mapoly0009s0019 [KOG1898] Splicing factor 3b, subunit 3; [PTHR10644:SF1] SPLICING FACTOR 3B SUBUNIT 3 (SPLICEOSOME-ASSOCIATED PROTEIN 130)(SAP 130); [PF10433] Mono-functional DNA-alkylating methyl methanesulfonate N-term; [PF03178] CPSF A subunit region; [GO:0005634] nucleus; [PTHR10644] DNA REPAIR/RNA PROCESSING CPSF FAMILY; [GO:0003676] nucleic acid binding; [K12830] splicing factor 3B subunit 379.300.7588
45 Mapoly0013s0152 [PTHR12436:SF4] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8; [KOG1861] Leucine permease transcriptional regulator; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family80.200.7744
46 Mapoly0060s0059 [GO:0006355] regulation of transcription, DNA-dependent; [PTHR16557:SF4] gb def: Alkylated DNA repair protein alkB; [PTHR16557] ALKYLATED DNA REPAIR PROTEIN ALKB-RELATED; [GO:0008270] zinc ion binding; [GO:0005634] nucleus; [KOG2845] Activating signal cointegrator 1; [PF06221] Putative zinc finger motif, C2HC5-type; [PF13532] 2OG-Fe(II) oxygenase superfamily82.400.7463
47 Mapoly0001s0364 [PTHR23322] FAS-ASSOCIATED PROTEIN; [PF02809] Ubiquitin interaction motif; [GO:0005515] protein binding; [PF00789] UBX domain; [PTHR23322:SF3] ARA4-INTERACTING PROTEIN84.180.6526
48 Mapoly0090s0009 [PTHR13130] 34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED; [PF11571] Mediator complex subunit 2785.020.7565
49 Mapoly0008s0063 [PTHR10742] AMINE OXIDASE; [PF01593] Flavin containing amine oxidoreductase; [GO:0055114] oxidation-reduction process; [GO:0005515] protein binding; [PF04433] SWIRM domain; [GO:0016491] oxidoreductase activity; [K11450] lysine-specific histone demethylase 1 [EC:1.-.-.-]; [KOG0029] Amine oxidase; [1.-.-.-] Oxidoreductases.88.370.7532
50 Mapoly0136s0010 [K03028] 26S proteasome regulatory subunit N1; [GO:0000502] proteasome complex; [PTHR10943] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT; [KOG2005] 26S proteasome regulatory complex, subunit RPN1/PSMD2; [PTHR10943:SF1] 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 2 (26S PROTEASOME REGULATORY SUBUNIT RPN1); [GO:0030234] enzyme regulator activity; [PF01851] Proteasome/cyclosome repeat; [GO:0042176] regulation of protein catabolic process88.980.7458
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