Guide Gene

Gene ID
Mapoly0025s0054
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR12438] UBIQUITIN-LIKE PROTEASE PROTEIN 2; [KOG0778] Protease, Ulp1 family; [GO:0008234] cysteine-type peptidase activity; [GO:0006508] proteolysis; [PF02902] Ulp1 protease family, C-terminal catalytic domain

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0025s0054 [PTHR12438] UBIQUITIN-LIKE PROTEASE PROTEIN 2; [KOG0778] Protease, Ulp1 family; [GO:0008234] cysteine-type peptidase activity; [GO:0006508] proteolysis; [PF02902] Ulp1 protease family, C-terminal catalytic domain 0.00 1.0000
1 Mapoly0088s0017 [PF13934] Nuclear pore complex assembly; [PTHR10044] INHIBITOR OF APOPTOSIS; [PF13920] Zinc finger, C3HC4 type (RING finger)3.000.8348
2 Mapoly0032s0100 [PTHR14095] PHOSPHATASE 2A REGULATORY SUBUNIT-RELATED; [KOG2562] Protein phosphatase 2 regulatory subunit; [K11583] protein phosphatase 2 (formerly 2A), regulatory subunit B''; [PF13499] EF-hand domain pair; [GO:0005509] calcium ion binding6.320.8174
3 Mapoly0026s0037 [KOG0733] Nuclear AAA ATPase (VCP subfamily); [GO:0005524] ATP binding; [PTHR23077:SF27] AAA FAMILY ATPASE-LIKE PROTEIN; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23077] AAA-FAMILY ATPASE7.350.7724
4 Mapoly0033s0111 [PTHR13587] FAMILY NOT NAMED; [K13140] integrator complex subunit 3; [PF10189] Conserved protein (DUF2356); [KOG4262] Uncharacterized conserved protein10.580.8210
5 Mapoly0177s0019 [KOG0149] Predicted RNA-binding protein SEB4 (RRM superfamily); [PF01480] PWI domain; [PTHR23365] POLY-A BINDING PROTEIN 2; [GO:0006397] mRNA processing; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)11.050.8280
6 Mapoly0011s0206 [GO:0005524] ATP binding; [PTHR24031:SF125] SUBFAMILY NOT NAMED; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [KOG0339] ATP-dependent RNA helicase; [K12835] ATP-dependent RNA helicase DDX42 [EC:3.6.4.13]; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding13.640.8243
7 Mapoly0092s0039 [GO:0005524] ATP binding; [KOG0737] AAA+-type ATPase; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23074] AAA ATPASE15.490.8002
8 Mapoly0105s0047 [PTHR12447] UNCHARACTERIZED WITH ANKYRIN REPEAT DOMAIN; [PF11904] GPCR-chaperone; [KOG0522] Ankyrin repeat protein; [PTHR12447:SF5] UNCHARACTERIZED; [PF13857] Ankyrin repeats (many copies)16.970.7644
9 Mapoly0046s0071 [PF02002] TFIIE alpha subunit; [KOG2593] Transcription initiation factor IIE, alpha subunit; [K03136] transcription initiation factor TFIIE subunit alpha; [PTHR13097] TRANSCRIPTION INITIATION FACTOR IIE, ALPHA SUBUNIT17.660.7626
10 Mapoly0051s0020 [PTHR12785:SF6] SUBFAMILY NOT NAMED; [K12829] splicing factor 3B subunit 2; [GO:0005634] nucleus; [PF04046] PSP; [KOG2330] Splicing factor 3b, subunit 2; [PTHR12785] FAMILY NOT NAMED; [PF04037] Domain of unknown function (DUF382)18.760.7960
11 Mapoly0019s0132 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [PTHR13832] PROTEIN PHOSPHATASE 2C; [PF00481] Protein phosphatase 2C; [GO:0006468] protein phosphorylation; [GO:0003824] catalytic activity; [KOG0594] Protein kinase PCTAIRE and related kinases19.620.7891
12 Mapoly0078s0014 [PTHR15237:SF0] SUBFAMILY NOT NAMED; [GO:0006281] DNA repair; [KOG2810] Checkpoint 9-1-1 complex, RAD9 component; [GO:0000077] DNA damage checkpoint; [GO:0030896] checkpoint clamp complex; [GO:0000075] cell cycle checkpoint; [PF04139] Rad9; [PTHR15237] DNA REPAIR PROTEIN RAD921.750.7600
13 Mapoly0103s0072 [KOG1901] Uncharacterized high-glucose-regulated protein; [PTHR12357] YTH (YT521-B HOMOLOGY) DOMAIN-CONTAINING; [PF04146] YT521-B-like domain21.980.7781
14 Mapoly0007s0209 [PF15275] PEHE domain; [GO:0005515] protein binding; [PF00439] Bromodomain; [PTHR22881] BROMODOMAIN CONTAINING PROTEIN24.100.7976
15 Mapoly0057s0088 [4.2.99.18] DNA-(apurinic or apyrimidinic site) lyase.; [KOG1294] Apurinic/apyrimidinic endonuclease and related enzymes; [GO:0006281] DNA repair; [K10771] AP endonuclease 1 [EC:4.2.99.18]; [PF03372] Endonuclease/Exonuclease/phosphatase family; [GO:0004518] nuclease activity; [PTHR22748] AP ENDONUCLEASE27.110.7566
16 Mapoly0061s0023 [PF13465] Zinc-finger double domain; [PF00096] Zinc finger, C2H2 type; [PTHR24409] FAMILY NOT NAMED; [GO:0046872] metal ion binding; [PF13894] C2H2-type zinc finger28.570.7756
17 Mapoly0066s0029 [PTHR12707] PINN; [K13114] pinin; [KOG3756] Pinin (desmosome-associated protein); [PF04696] pinin/SDK/memA/ protein conserved region31.700.7872
18 Mapoly0029s0056 [PTHR24375] FAMILY NOT NAMED; [PF00096] Zinc finger, C2H2 type; [PF00628] PHD-finger; [GO:0005515] protein binding; [GO:0046872] metal ion binding; [PF13912] C2H2-type zinc finger32.250.7792
19 Mapoly0065s0047 [PF13837] Myb/SANT-like DNA-binding domain34.960.7574
20 Mapoly0042s0064 [PTHR22880] FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS; [GO:0005515] protein binding; [PF00439] Bromodomain; [KOG1474] Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins34.990.7462
21 Mapoly0091s0046 [PF05641] Agenet domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PTHR24098] FAMILY NOT NAMED35.240.7941
22 Mapoly0002s0089 [PTHR23054] UNCHARACTERIZED; [PF04784] Protein of unknown function, DUF547; [PF14389] Leucine-zipper of ternary complex factor MIP135.330.6900
23 Mapoly0005s0060 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11367] chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12]; [PF13907] Domain of unknown function (DUF4208); [PTHR10799:SF70] CHROMODOMAIN HELICASE DNA BINDING PROTEIN; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [KOG0384] Chromodomain-helicase DNA-binding protein35.640.7909
24 Mapoly0121s0014 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR23329] TUFTELIN-INTERACTING PROTEIN 11-RELATED; [PF07842] GC-rich sequence DNA-binding factor-like protein; [KOG2184] Tuftelin-interacting protein TIP39, contains G-patch domain; [PF01585] G-patch domain; [PF12457] Tuftelin interacting protein N terminal; [GO:0005634] nucleus; [GO:0003676] nucleic acid binding; [PTHR23329:SF1] TUFTELIN INTERACTING PROTEIN 11; [K13103] tuftelin-interacting protein 1138.990.7799
25 Mapoly0035s0121 [PF11935] Domain of unknown function (DUF3453); [K06100] symplekin; [KOG1895] mRNA cleavage and polyadenylation factor II complex, subunit PTA1; [PF12295] Symplekin tight junction protein C terminal; [PTHR15245] SYMPLEKIN-RELATED43.270.7889
26 Mapoly0085s0091 [GO:0005524] ATP binding; [KOG0198] MEKK and related serine/threonine protein kinases; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24361] MITOGEN-ACTIVATED KINASE KINASE KINASE43.680.7803
27 Mapoly0007s0068 [GO:0006355] regulation of transcription, DNA-dependent; [GO:0019901] protein kinase binding; [PF00134] Cyclin, N-terminal domain; [PTHR10026] CYCLIN; [PF02984] Cyclin, C-terminal domain; [GO:0005634] nucleus; [KOG0834] CDK9 kinase-activating protein cyclin T; [GO:0000079] regulation of cyclin-dependent protein serine/threonine kinase activity44.310.7880
28 Mapoly0029s0126 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PF09416] RNA helicase (UPF2 interacting domain); [GO:0004386] helicase activity; [GO:0005737] cytoplasm; [PTHR10887] DNA2/NAM7 HELICASE FAMILY; [KOG1802] RNA helicase nonsense mRNA reducing factor (pNORF1); [GO:0008270] zinc ion binding; [PF13086] AAA domain; [3.6.4.-] Acting on acid anhydrides; involved in cellular and subcellular movement.; [K14326] regulator of nonsense transcripts 1 [EC:3.6.4.-]; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF13087] AAA domain44.740.7872
29 Mapoly0190s0007 [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [KOG1919] RNA pseudouridylate synthases; [GO:0009451] RNA modification; [PTHR10436] RNA PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN; [GO:0009982] pseudouridine synthase activity; [PF00849] RNA pseudouridylate synthase45.170.7395
30 Mapoly0026s0069 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family46.990.7571
31 Mapoly0007s0016 -49.890.7166
32 Mapoly0013s0152 [PTHR12436:SF4] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8; [KOG1861] Leucine permease transcriptional regulator; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family52.000.7871
33 Mapoly0024s0131 -55.080.7642
34 Mapoly0052s0047 [PF03556] Cullin binding; [PTHR12281] RP42 RELATED58.300.7284
35 Mapoly0009s0189 [GO:0003723] RNA binding; [K13095] splicing factor 1; [PF00013] KH domain; [KOG0119] Splicing factor 1/branch point binding protein (RRM superfamily); [GO:0003676] nucleic acid binding; [PTHR11208] RNA-BINDING PROTEIN RELATED; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)58.860.7581
36 Mapoly0094s0004 [GO:0003677] DNA binding; [PTHR22970:SF1] SUBFAMILY NOT NAMED; [PTHR22970] FAMILY NOT NAMED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005622] intracellular59.330.7619
37 Mapoly0011s0138 [PF12717] non-SMC mitotic condensation complex subunit 1; [K13141] integrator complex subunit 4; [PTHR20938] UNCHARACTERIZED; [PTHR20938:SF0] SUBFAMILY NOT NAMED59.900.7759
38 Mapoly0072s0074 [GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [KOG2140] Uncharacterized conserved protein; [PTHR18034] CELL CYCLE CONTROL PROTEIN CWF22-RELATED; [PTHR18034:SF3] CELL CYCLE CONTROL PROTEIN CWF22; [K13100] pre-mRNA-splicing factor CWC22; [PF02847] MA3 domain62.390.7865
39 Mapoly0105s0045 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [PTHR12029] RNA METHYLTRANSFERASE; [PF00588] SpoU rRNA Methylase family; [PTHR12029:SF11] 23S RRNA METHYLTRANSFERASE; [GO:0008173] RNA methyltransferase activity; [KOG0839] RNA Methylase, SpoU family62.930.7500
40 Mapoly0051s0017 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376:SF31] OS04G0572600 PROTEIN; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [K03018] DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]; [GO:0032549] ribonucleoside binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [KOG0261] RNA polymerase III, large subunit63.280.7767
41 Mapoly0105s0061 [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)64.090.7727
42 Mapoly0096s0028 [PTHR21683:SF3] SUBFAMILY NOT NAMED; [PTHR21683] UNCHARACTERIZED; [PF13863] Domain of unknown function (DUF4200)64.510.7460
43 Mapoly0030s0052 [GO:0005524] ATP binding; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR11909] CASEIN KINASE-RELATED; [KOG1164] Casein kinase (serine/threonine/tyrosine protein kinase)64.620.7683
44 Mapoly0062s0029 [KOG1982] Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p; [PF08652] RAI1 like PD-(D/E)XK nuclease; [PTHR12395:SF9] SUBFAMILY NOT NAMED; [PTHR12395] DOM-3 RELATED65.880.7701
45 Mapoly0133s0002 [KOG2441] mRNA splicing factor/probable chromatin binding snw family nuclear protein; [GO:0005681] spliceosomal complex; [GO:0000398] mRNA splicing, via spliceosome; [K06063] SNW domain-containing protein 1; [PTHR12096] NUCLEAR PROTEIN SKIP-RELATED; [PF02731] SKIP/SNW domain67.480.7580
46 Mapoly0013s0178 [PF07719] Tetratricopeptide repeat; [GO:0005515] protein binding; [PF13414] TPR repeat; [PF00515] Tetratricopeptide repeat; [PTHR23083] TETRATRICOPEPTIDE REPEAT PROTEIN, TPR67.560.7405
47 Mapoly0036s0119 [PF14500] Dos2-interacting transcription regulator of RNA-Pol-II; [PF12460] RNAPII transcription regulator C-terminal; [PTHR12891] DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS1968.190.7678
48 Mapoly0026s0081 [PF13516] Leucine Rich repeat; [GO:0005515] protein binding; [PTHR23125] F-BOX/LEUCINE RICH REPEAT PROTEIN; [KOG1947] Leucine rich repeat proteins, some proteins contain F-box; [PF00646] F-box domain68.740.6998
49 Mapoly0014s0003 [GO:0035267] NuA4 histone acetyltransferase complex; [PF10513] Enhancer of polycomb-like; [GO:0032777] Piccolo NuA4 histone acetyltransferase complex; [K11322] enhancer of polycomb-like protein; [PTHR14898] ENHANCER OF POLYCOMB69.820.7459
50 Mapoly0039s0062 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [KOG0922] DEAH-box RNA helicase; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold69.860.7235
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