Guide Gene

Gene ID
Mapoly0014s0196
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PTHR12272] FAMILY NOT NAMED; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [KOG3741] Poly(A) ribonuclease subunit; [K12572] PAB-dependent poly(A)-specific ribonuclease subunit 3; [GO:0046872] metal ion binding

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0014s0196 [PTHR12272] FAMILY NOT NAMED; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [KOG3741] Poly(A) ribonuclease subunit; [K12572] PAB-dependent poly(A)-specific ribonuclease subunit 3; [GO:0046872] metal ion binding 0.00 1.0000
1 Mapoly0003s0158 [KOG0149] Predicted RNA-binding protein SEB4 (RRM superfamily); [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [PF13637] Ankyrin repeats (many copies); [GO:0003676] nucleic acid binding; [GO:0046872] metal ion binding; [PF12796] Ankyrin repeats (3 copies); [PTHR24198] ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)1.730.8426
2 Mapoly0053s0062 [PF12739] ER-Golgi trafficking TRAPP I complex 85 kDa subunit; [PTHR12975] TRANSPORT PROTEIN (TRAPP); [PTHR12975:SF6] SUBFAMILY NOT NAMED; [KOG1938] Protein with predicted involvement in meiosis (GSG1)2.000.8243
3 Mapoly0069s0005 [PF11919] Domain of unknown function (DUF3437); [KOG1851] Uncharacterized conserved protein; [K06699] proteasome activator subunit 4; [PTHR32170] FAMILY NOT NAMED3.870.8070
4 Mapoly0103s0005 [PTHR32059] FAMILY NOT NAMED; [GO:0005515] protein binding; [PTHR32059:SF0] SUBFAMILY NOT NAMED; [PF02985] HEAT repeat; [KOG0211] Protein phosphatase 2A regulatory subunit A and related proteins7.420.7854
5 Mapoly0029s0023 -9.800.7534
6 Mapoly0054s0088 [GO:0003677] DNA binding; [PF01426] BAH domain; [GO:0003682] chromatin binding; [PF08711] TFIIS helical bundle-like domain; [GO:0005634] nucleus; [GO:0006351] transcription, DNA-dependent; [KOG1886] BAH domain proteins; [PTHR15141] TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 312.330.7759
7 Mapoly0144s0009 [PTHR12436:SF3] 80 KDA MCM3-ASSOCIATED PROTEIN; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family13.750.7728
8 Mapoly0032s0123 [PTHR13484] FIP1-LIKE 1 PROTEIN; [PF05182] Fip1 motif; [KOG2812] Uncharacterized conserved protein14.280.7988
9 Mapoly0062s0116 [K11789] HIV-1 Vpr-binding protein; [PTHR13129] VPRBP PROTEIN-RELATED; [KOG1832] HIV-1 Vpr-binding protein; [PTHR13129:SF4] SUBFAMILY NOT NAMED14.830.8049
10 Mapoly0058s0028 [KOG3569] RAS signaling inhibitor ST5; [GO:0005515] protein binding; [PF02141] DENN (AEX-3) domain; [PF03456] uDENN domain; [PF03455] dDENN domain; [PTHR22844] F-BOX AND WD40 DOMAIN PROTEIN; [PF00400] WD domain, G-beta repeat15.870.7891
11 Mapoly0024s0066 [GO:0005524] ATP binding; [GO:0005515] protein binding; [KOG0737] AAA+-type ATPase; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR23074] AAA ATPASE; [PF00498] FHA domain16.250.7718
12 Mapoly0012s0015 [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED16.970.7808
13 Mapoly0084s0085 [PTHR21717] TELOMERIC REPEAT BINDING PROTEIN; [PTHR21717:SF9] TELOMERIC REPEAT BINDING PROTEIN 117.320.7201
14 Mapoly0061s0046 [KOG0170] E3 ubiquitin protein ligase; [PTHR11254:SF73] HECT UBIQUITIN-PROTEIN LIGASE 3 (KAKTUS PROTEIN); [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [6.3.2.19] Ubiquitin--protein ligase.; [GO:0004842] ubiquitin-protein ligase activity; [K10590] E3 ubiquitin-protein ligase TRIP12 [EC:6.3.2.19]; [PF00632] HECT-domain (ubiquitin-transferase)17.750.8022
15 Mapoly0042s0063 [PF01494] FAD binding domain; [KOG3855] Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis; [PTHR13789] MONOOXYGENASE18.060.6619
16 Mapoly0138s0020 [PTHR23213] FORMIN-RELATED; [PF02181] Formin Homology 2 Domain; [PF10409] C2 domain of PTEN tumour-suppressor protein; [KOG1922] Rho GTPase effector BNI1 and related formins18.440.7757
17 Mapoly0058s0092 -20.980.6875
18 Mapoly0101s0033 [PTHR21663] HYPOTHETICAL HEAT DOMAIN-CONTAINING; [KOG1822] Uncharacterized conserved protein; [PTHR21663:SF0] SUBFAMILY NOT NAMED21.210.7874
19 Mapoly0014s0139 -23.130.6900
20 Mapoly0005s0070 [PF05623] Protein of unknown function (DUF789); [PTHR32010] FAMILY NOT NAMED23.370.7984
21 Mapoly0177s0011 [GO:0006289] nucleotide-excision repair; [PF00867] XPG I-region; [PF00752] XPG N-terminal domain; [GO:0003697] single-stranded DNA binding; [K10846] DNA excision repair protein ERCC-5; [GO:0005634] nucleus; [PTHR11081:SF1] DNA-REPAIR PROTEIN XP-G; [GO:0006281] DNA repair; [GO:0004518] nuclease activity; [PTHR11081] XP-G/RAD2 DNA REPAIR ENDONUCLEASE FAMILY; [GO:0004519] endonuclease activity25.690.7590
22 Mapoly0156s0008 [PTHR13923] SEC31-RELATED PROTEIN; [GO:0005515] protein binding; [KOG0307] Vesicle coat complex COPII, subunit SEC31; [K14005] protein transport protein SEC31; [PF12931] Sec23-binding domain of Sec16; [PF00400] WD domain, G-beta repeat25.980.7635
23 Mapoly0202s0008 [GO:0005097] Rab GTPase activator activity; [PTHR22957] TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN; [GO:0032313] regulation of Rab GTPase activity; [PF00566] Rab-GTPase-TBC domain26.120.7562
24 Mapoly0085s0070 [GO:0016567] protein ubiquitination; [GO:0005515] protein binding; [KOG0279] G protein beta subunit-like protein; [PTHR22844] F-BOX AND WD40 DOMAIN PROTEIN; [GO:0004842] ubiquitin-protein ligase activity; [PF04564] U-box domain; [PF00400] WD domain, G-beta repeat26.830.7525
25 Mapoly0009s0011 [PF06650] Protein of unknown function (DUF1162); [PTHR16166] VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN (VPS13); [PF12624] N-terminal region of Chorein, a TM vesicle-mediated sorter29.730.7789
26 Mapoly0140s0044 [GO:0005524] ATP binding; [KOG0198] MEKK and related serine/threonine protein kinases; [PF00069] Protein kinase domain; [PTHR24361:SF148] SERINE/THREONINE PROTEIN KINASE; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PTHR24361] MITOGEN-ACTIVATED KINASE KINASE KINASE30.740.7820
27 Mapoly0036s0144 [GO:0003723] RNA binding; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [KOG2049] Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily); [PF00806] Pumilio-family RNA binding repeat; [PTHR12537] RNA BINDING PROTEIN PUMILIO-RELATED; [GO:0046872] metal ion binding31.780.6921
28 Mapoly0003s0206 [KOG1082] Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing; [PF05033] Pre-SET motif; [GO:0005515] protein binding; [PF00856] SET domain; [GO:0008270] zinc ion binding; [GO:0018024] histone-lysine N-methyltransferase activity; [PTHR22884] SET DOMAIN PROTEINS; [GO:0005634] nucleus; [GO:0034968] histone lysine methylation; [PF13912] C2H2-type zinc finger33.700.7918
29 Mapoly0010s0175 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [K12735] peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8]; [GO:0008270] zinc ion binding; [GO:0000413] protein peptidyl-prolyl isomerization; [PF00098] Zinc knuckle; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [GO:0003676] nucleic acid binding; [KOG0415] Predicted peptidyl prolyl cis-trans isomerase; [PTHR11071:SF156] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)34.290.7852
30 Mapoly0011s0008 [PTHR11254] HECT DOMAIN UBIQUITIN-PROTEIN LIGASE; [KOG0941] E3 ubiquitin protein ligase; [GO:0004842] ubiquitin-protein ligase activity; [PF00415] Regulator of chromosome condensation (RCC1) repeat; [PF00632] HECT-domain (ubiquitin-transferase)34.580.7408
31 Mapoly0005s0166 [PTHR31413] FAMILY NOT NAMED; [PF07897] Protein of unknown function (DUF1675)34.640.7087
32 Mapoly0026s0079 -35.000.7382
33 Mapoly0157s0010 [GO:0003677] DNA binding; [GO:0016570] histone modification; [GO:0006352] DNA-dependent transcription, initiation; [PF00642] Zinc finger C-x8-C-x5-C-x3-H type (and similar); [GO:0005515] protein binding; [PF03126] Plus-3 domain; [PTHR22884] SET DOMAIN PROTEINS; [PF02213] GYF domain; [GO:0005634] nucleus; [KOG1946] RNA polymerase I transcription factor UAF; [PF02201] SWIB/MDM2 domain; [GO:0046872] metal ion binding36.210.7699
34 Mapoly0001s0012 [PF10266] Hereditary spastic paraplegia protein strumpellin; [GO:0071203] WASH complex; [PTHR15691:SF6] PROTEIN KIAA0196; [KOG3666] Uncharacterized conserved protein; [PTHR15691] PROTEIN KIAA019636.330.7531
35 Mapoly0111s0052 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [KOG1015] Transcription regulator XNP/ATRX, DEAD-box superfamily; [K11681] helicase SWR1 [EC:3.6.4.12]; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [PF07529] HSA; [PF13921] Myb-like DNA-binding domain37.820.7820
36 Mapoly0179s0009 [KOG0978] E3 ubiquitin ligase involved in syntaxin degradation; [GO:0005515] protein binding; [PF01465] GRIP domain; [GO:0000042] protein targeting to Golgi38.080.7333
37 Mapoly0106s0017 [KOG2231] Predicted E3 ubiquitin ligase; [PTHR22938:SF0] SUBFAMILY NOT NAMED; [PTHR22938] ZINC FINGER PROTEIN 59838.210.6715
38 Mapoly0105s0004 [PTHR31267] FAMILY NOT NAMED38.700.7820
39 Mapoly0002s0111 [GO:0005524] ATP binding; [PF13445] RING-type zinc-finger; [KOG0198] MEKK and related serine/threonine protein kinases; [PF00069] Protein kinase domain; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PF12796] Ankyrin repeats (3 copies); [PTHR24198] ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN40.310.7277
40 Mapoly0108s0010 [PF04424] Protein of unknown function (DUF544); [PTHR18063] NF-E2 INDUCIBLE PROTEIN40.550.6759
41 Mapoly0123s0014 [GO:0008270] zinc ion binding; [PF02207] Putative zinc finger in N-recognin (UBR box); [KOG1139] Predicted ubiquitin-protein ligase of the N-recognin family; [PTHR21497] UBIQUITIN LIGASE E3 ALPHA-RELATED; [GO:0004842] ubiquitin-protein ligase activity40.620.7275
42 Mapoly0126s0027 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0390] DNA repair protein, SNF2 family; [PF00271] Helicase conserved C-terminal domain40.910.7367
43 Mapoly0031s0102 [KOG0144] RNA-binding protein CUGBP1/BRUNO (RRM superfamily); [PTHR24011] FAMILY NOT NAMED; [PF04059] RNA recognition motif 2; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)41.470.7453
44 Mapoly0032s0018 [KOG0796] Spliceosome subunit43.820.7694
45 Mapoly0061s0069 [K09422] myb proto-oncogene protein, plant; [KOG0048] Transcription factor, Myb superfamily; [PF00249] Myb-like DNA-binding domain; [PTHR10641] MYB-LIKE DNA-BINDING PROTEIN MYB; [GO:0003682] chromatin binding; [PF13921] Myb-like DNA-binding domain44.160.7504
46 Mapoly0001s0369 [K12879] THO complex subunit 2; [PF11262] Transcription factor/nuclear export subunit protein 2; [PTHR21597] THO2 PROTEIN; [PF11732] Transcription- and export-related complex subunit; [PTHR21597:SF0] SUBFAMILY NOT NAMED; [KOG1874] KEKE-like motif-containing transcription regulator (Rlr1)/suppressor of sin445.500.7763
47 Mapoly0043s0039 [GO:0005524] ATP binding; [PTHR23069] TAT-BINDING HOMOLOG 7; [KOG0737] AAA+-type ATPase; [PF00004] ATPase family associated with various cellular activities (AAA); [PF13771] PHD-like zinc-binding domain46.430.7130
48 Mapoly0076s0056 [3.1.13.4] Poly(A)-specific ribonuclease.; [GO:0005634] nucleus; [PF04857] CAF1 family ribonuclease; [PTHR15092] POLY(A)-SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1; [K01148] poly(A)-specific ribonuclease [EC:3.1.13.4]46.480.6725
49 Mapoly0072s0019 [PF03828] Cid1 family poly A polymerase; [PTHR23092:SF1] TOPOISOMERASE-RELATED PROTEIN; [PTHR23092] TOPOISOMERASE-RELATED PROTEIN; [PF01909] Nucleotidyltransferase domain; [GO:0016779] nucleotidyltransferase activity49.240.7683
50 Mapoly0068s0038 [PTHR13413] YLP MOTIF CONTAINING PROTEIN (NUCLEAR PROTEIN ZAP); [PTHR13413:SF0] SUBFAMILY NOT NAMED; [GO:0005634] nucleus50.480.7645
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