Guide Gene

Gene ID
Mapoly0003s0258
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF02204] Vacuolar sorting protein 9 (VPS9) domain; [KOG2319] Vacuolar assembly/sorting protein VPS9; [PTHR23101] RAB GDP/GTP EXCHANGE FACTOR

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0003s0258 [PF02204] Vacuolar sorting protein 9 (VPS9) domain; [KOG2319] Vacuolar assembly/sorting protein VPS9; [PTHR23101] RAB GDP/GTP EXCHANGE FACTOR 0.00 1.0000
1 Mapoly0011s0005 [PF01602] Adaptin N terminal region; [PTHR22780] ADAPTIN, ALPHA/GAMMA/EPSILON; [GO:0016192] vesicle-mediated transport; [K12400] AP-4 complex subunit epsilon-1; [KOG1062] Vesicle coat complex AP-1, gamma subunit; [GO:0006886] intracellular protein transport; [GO:0030117] membrane coat; [PTHR22780:SF13] SUBFAMILY NOT NAMED1.000.7860
2 Mapoly0102s0002 [3.6.3.14] H(+)-transporting two-sector ATPase.; [GO:0046961] proton-transporting ATPase activity, rotational mechanism; [K02144] V-type H+-transporting ATPase 54 kD subunit [EC:3.6.3.14]; [PF11698] V-ATPase subunit H; [PTHR10698:SF0] V-TYPE PROTON ATPASE SUBUNIT H; [GO:0000221] vacuolar proton-transporting V-type ATPase, V1 domain; [KOG2759] Vacuolar H+-ATPase V1 sector, subunit H; [GO:0015991] ATP hydrolysis coupled proton transport; [GO:0016820] hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; [PF03224] V-ATPase subunit H; [PTHR10698] V-TYPE PROTON ATPASE SUBUNIT H4.900.7712
3 Mapoly0012s0184 [KOG1454] Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily); [PTHR10992] ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN; [PF12697] Alpha/beta hydrolase family7.480.6789
4 Mapoly0034s0016 [KOG1439] RAB proteins geranylgeranyltransferase component A (RAB escort protein); [PTHR11787] RAB GDP-DISSOCIATION INHIBITOR; [PF00996] GDP dissociation inhibitor7.750.7196
5 Mapoly0013s0086 [KOG0452] RNA-binding translational regulator IRP (aconitase superfamily); [4.2.1.3] Aconitate hydratase.; [PF00694] Aconitase C-terminal domain; [K01681] aconitate hydratase 1 [EC:4.2.1.3]; [GO:0008152] metabolic process; [PTHR11670] ACONITASE; [PTHR11670:SF1] ACONITASE; [PF00330] Aconitase family (aconitate hydratase)7.940.6981
6 Mapoly0801s0001 -8.490.6532
7 Mapoly0004s0279 [PTHR11711] ADP RIBOSYLATION FACTOR-RELATED; [PF00025] ADP-ribosylation factor family; [K07977] Arf/Sar family, other; [KOG0070] GTP-binding ADP-ribosylation factor Arf1; [GO:0005525] GTP binding10.540.7242
8 Mapoly0074s0068 [GO:0000287] magnesium ion binding; [GO:0004743] pyruvate kinase activity; [GO:0006096] glycolysis; [GO:0030955] potassium ion binding; [PF02887] Pyruvate kinase, alpha/beta domain; [PF00224] Pyruvate kinase, barrel domain; [K00873] pyruvate kinase [EC:2.7.1.40]; [KOG2323] Pyruvate kinase; [PTHR11817] PYRUVATE KINASE; [2.7.1.40] Pyruvate kinase.12.730.7040
9 Mapoly0002s0273 [PTHR21576] UNCHARACTERIZED NODULIN-LIKE PROTEIN; [PF06813] Nodulin-like13.230.7164
10 Mapoly0039s0027 [GO:0055114] oxidation-reduction process; [GO:0016717] oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water; [PTHR32100] FAMILY NOT NAMED; [PF00487] Fatty acid desaturase; [GO:0006629] lipid metabolic process; [PF11960] Domain of unknown function (DUF3474)17.320.6952
11 Mapoly0027s0136 [GO:0016020] membrane; [PTHR11654] OLIGOPEPTIDE TRANSPORTER-RELATED; [PF00854] POT family; [KOG1237] H+/oligopeptide symporter; [GO:0006810] transport; [GO:0005215] transporter activity20.780.6775
12 Mapoly0013s0177 [PTHR11711] ADP RIBOSYLATION FACTOR-RELATED; [K07942] ADP-ribosylation factor-like 1; [PF00025] ADP-ribosylation factor family; [KOG0070] GTP-binding ADP-ribosylation factor Arf1; [GO:0005525] GTP binding21.000.6680
13 Mapoly0010s0027 [PTHR23359] NUCLEOTIDE KINASE; [GO:0005524] ATP binding; [K00939] adenylate kinase [EC:2.7.4.3]; [GO:0019205] nucleobase-containing compound kinase activity; [KOG3078] Adenylate kinase; [GO:0006139] nucleobase-containing compound metabolic process; [PF00406] Adenylate kinase; [2.7.4.3] Adenylate kinase.23.320.6565
14 Mapoly0063s0097 [GO:0008060] ARF GTPase activator activity; [PTHR23180:SF16] ARF GTPASE-ACTIVATING PROTEIN; [PTHR23180] CENTAURIN/ARF; [GO:0008270] zinc ion binding; [GO:0032312] regulation of ARF GTPase activity; [K12493] ADP-ribosylation factor GTPase-activating protein 2/3; [PF01412] Putative GTPase activating protein for Arf; [KOG0706] Predicted GTPase-activating protein24.190.6787
15 Mapoly0113s0032 [GO:0006396] RNA processing; [KOG0331] ATP-dependent RNA helicase; [GO:0003723] RNA binding; [GO:0005524] ATP binding; [PF02170] PAZ domain; [PTHR14950] HELICASE-RELATED; [PF00035] Double-stranded RNA binding motif; [GO:0005515] protein binding; [GO:0016891] endoribonuclease activity, producing 5'-phosphomonoesters; [PF03368] Dicer dimerisation domain; [PF00270] DEAD/DEAH box helicase; [PF00636] Ribonuclease III domain; [GO:0004525] ribonuclease III activity; [PF00271] Helicase conserved C-terminal domain; [GO:0003676] nucleic acid binding27.860.7003
16 Mapoly0011s0147 [PF03151] Triose-phosphate Transporter family; [PTHR11132] SOLUTE CARRIER FAMILY 35; [KOG1441] Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter30.590.6847
17 Mapoly0003s0271 [PTHR31636] FAMILY NOT NAMED; [PF03514] GRAS domain family31.780.6051
18 Mapoly0011s0108 -32.500.6441
19 Mapoly0578s0001 -32.790.6633
20 Mapoly0119s0044 [GO:0016021] integral to membrane; [KOG1278] Endosomal membrane proteins, EMP70; [PF02990] Endomembrane protein 70; [PTHR10766] TRANSMEMBRANE 9 SUPERFAMILY PROTEIN33.050.6874
21 Mapoly0001s0327 [PTHR23151] DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED; [2.3.1.12] Dihydrolipoyllysine-residue acetyltransferase.; [PF00364] Biotin-requiring enzyme; [KOG0557] Dihydrolipoamide acetyltransferase; [GO:0016746] transferase activity, transferring acyl groups; [GO:0008152] metabolic process; [K00627] pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase) [EC:2.3.1.12]; [PF00198] 2-oxoacid dehydrogenases acyltransferase (catalytic domain); [PF02817] e3 binding domain33.410.6598
22 Mapoly0141s0013 [PF00682] HMGL-like; [K01640] hydroxymethylglutaryl-CoA lyase [EC:4.1.3.4]; [PTHR10277:SF1] HYDROXYMETHYLGLUTARYL-COA LYASE; [PTHR10277] HOMOCITRATE SYNTHASE-RELATED; [4.1.3.4] Hydroxymethylglutaryl-CoA lyase.; [KOG2368] Hydroxymethylglutaryl-CoA lyase; [GO:0003824] catalytic activity33.940.6595
23 Mapoly0014s0171 [KOG1339] Aspartyl protease; [PF14543] Xylanase inhibitor N-terminal; [PTHR13683] ASPARTYL PROTEASES; [PF14541] Xylanase inhibitor C-terminal; [GO:0004190] aspartic-type endopeptidase activity; [GO:0006508] proteolysis38.500.6732
24 Mapoly0062s0074 [KOG4742] Predicted chitinase; [GO:0006032] chitin catabolic process; [GO:0004568] chitinase activity; [PTHR22595] CHITINASE-RELATED; [GO:0016998] cell wall macromolecule catabolic process; [PF00182] Chitinase class I40.210.6184
25 Mapoly0002s0232 [KOG1385] Nucleoside phosphatase; [GO:0016787] hydrolase activity; [PTHR11782] ADENOSINE/GUANOSINE DIPHOSPHATASE; [K14641] apyrase [EC:3.6.1.5]; [3.6.1.5] Apyrase.; [PF01150] GDA1/CD39 (nucleoside phosphatase) family40.470.7033
26 Mapoly0014s0129 [GO:0016021] integral to membrane; [GO:0006813] potassium ion transport; [GO:0005242] inward rectifier potassium channel activity; [PF01007] Inward rectifier potassium channel; [PTHR11767] INWARD RECTIFIER POTASSIUM CHANNEL40.990.6707
27 Mapoly0020s0010 -42.600.6945
28 Mapoly0043s0007 -46.480.6494
29 Mapoly0093s0083 [KOG0254] Predicted transporter (major facilitator superfamily); [PF00083] Sugar (and other) transporter; [GO:0016021] integral to membrane; [GO:0055085] transmembrane transport; [GO:0022857] transmembrane transporter activity; [PTHR24063] FAMILY NOT NAMED47.240.6237
30 Mapoly0041s0037 [GO:0008060] ARF GTPase activator activity; [K12486] stromal membrane-associated protein; [PTHR23180] CENTAURIN/ARF; [GO:0008270] zinc ion binding; [KOG0702] Predicted GTPase-activating protein; [GO:0032312] regulation of ARF GTPase activity; [PF01412] Putative GTPase activating protein for Arf51.150.6018
31 Mapoly0067s0030 [KOG0254] Predicted transporter (major facilitator superfamily); [PF00083] Sugar (and other) transporter; [GO:0016021] integral to membrane; [PTHR24063:SF148] PUTATIVE UNCHARACTERIZED PROTEIN; [GO:0055085] transmembrane transport; [GO:0022857] transmembrane transporter activity; [PTHR24063] FAMILY NOT NAMED51.810.5542
32 Mapoly0029s0048 [GO:0000287] magnesium ion binding; [K00030] isocitrate dehydrogenase (NAD+) [EC:1.1.1.41]; [GO:0055114] oxidation-reduction process; [PF00180] Isocitrate/isopropylmalate dehydrogenase; [KOG0784] Isocitrate dehydrogenase, gamma subunit; [GO:0016616] oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; [PTHR11835] DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE; [GO:0051287] NAD binding; [1.1.1.41] Isocitrate dehydrogenase (NAD(+)).51.850.6610
33 Mapoly0111s0054 [6.2.1.5] Succinate--CoA ligase (ADP-forming).; [6.2.1.4] Succinate--CoA ligase (GDP-forming).; [GO:0048037] cofactor binding; [GO:0008152] metabolic process; [GO:0003824] catalytic activity; [KOG1255] Succinyl-CoA synthetase, alpha subunit; [PF00549] CoA-ligase; [PF02629] CoA binding domain; [K01899] succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5]; [PTHR11117] SUCCINYL-COA SYNTHETASE-RELATED52.960.6755
34 Mapoly0072s0094 [KOG0251] Clathrin assembly protein AP180 and related proteins, contain ENTH domain; [GO:0005543] phospholipid binding; [PF07651] ANTH domain; [PTHR22951] CLATHRIN ASSEMBLY PROTEIN54.390.6124
35 Mapoly0077s0025 [PF01370] NAD dependent epimerase/dehydratase family; [GO:0003824] catalytic activity; [GO:0050662] coenzyme binding; [KOG1502] Flavonol reductase/cinnamoyl-CoA reductase; [PTHR10366] NAD DEPENDENT EPIMERASE/DEHYDRATASE55.100.6647
36 Mapoly0033s0128 [PF03134] TB2/DP1, HVA22 family; [PTHR12300] HVA22-LIKE PROTEINS; [PTHR12300:SF22] SUBFAMILY NOT NAMED55.150.6630
37 Mapoly0004s0241 -56.440.6621
38 Mapoly0004s0107 [GO:0045454] cell redox homeostasis; [5.3.4.1] Protein disulfide-isomerase.; [PF13848] Thioredoxin-like domain; [KOG0190] Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit); [PF00085] Thioredoxin; [K09580] protein disulfide-isomerase A1 [EC:5.3.4.1]; [PTHR18929] PROTEIN DISULFIDE ISOMERASE57.450.6601
39 Mapoly0003s0160 [PTHR13608:SF3] SUBFAMILY NOT NAMED; [PTHR13608] UNCHARACTERIZED58.020.6743
40 Mapoly0075s0069 [GO:0030130] clathrin coat of trans-Golgi network vesicle; [GO:0016192] vesicle-mediated transport; [PTHR10639] CLATHRIN LIGHT CHAIN; [PF01086] Clathrin light chain; [GO:0006886] intracellular protein transport; [GO:0030132] clathrin coat of coated pit; [GO:0005198] structural molecule activity63.050.6334
41 Mapoly0005s0102 [PF00501] AMP-binding enzyme; [KOG1176] Acyl-CoA synthetase; [K10526] OPC-8:0 CoA ligase 1 [EC:6.2.1.-]; [6.2.1.-] Acid--thiol ligases.; [PF13193] AMP-binding enzyme C-terminal domain; [GO:0008152] metabolic process; [GO:0003824] catalytic activity; [PTHR24096] FAMILY NOT NAMED64.650.6327
42 Mapoly0067s0083 [PF05562] Cold acclimation protein WCOR41364.990.6637
43 Mapoly0033s0132 [PF00650] CRAL/TRIO domain; [PTHR10174] RETINALDEHYDE BINDING PROTEIN-RELATED; [PF03765] CRAL/TRIO, N-terminal domain; [KOG1470] Phosphatidylinositol transfer protein PDR16 and related proteins67.480.6427
44 Mapoly0115s0013 [KOG0425] Ubiquitin-protein ligase; [PTHR24067:SF3] UBIQUITIN-CONJUGATING ENZYME E2 G1; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [PF00179] Ubiquitin-conjugating enzyme; [K10575] ubiquitin-conjugating enzyme E2 G1 [EC:6.3.2.19]68.750.6608
45 Mapoly0002s0305 [KOG2868] Decapping enzyme complex component DCP1; [PF06058] Dcp1-like decapping family; [PTHR16290] TRANSCRIPTION FACTOR SMIF (DECAPPING ENZYME DCP1)70.100.5744
46 Mapoly0031s0116 [GO:0006571] tyrosine biosynthetic process; [GO:0008977] prephenate dehydrogenase activity; [GO:0055114] oxidation-reduction process; [PTHR11811:SF26] 3-HYDROXYISOBUTYRATE DEHYDROGENASE-RELATED; [GO:0004665] prephenate dehydrogenase (NADP+) activity; [PF02153] Prephenate dehydrogenase; [PTHR11811] 6-PHOSPHOGLUCONATE DEHYDROGENASE71.620.6073
47 Mapoly0009s0170 [PF03151] Triose-phosphate Transporter family; [PTHR11132] SOLUTE CARRIER FAMILY 35; [KOG1441] Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter72.430.6297
48 Mapoly0113s0056 [K13506] glycerol-3-phosphate O-acyltransferase 3/4 [EC:2.3.1.15]; [PTHR23063:SF2] ACYLTRANSFERASE-LIKE PROTEIN 4; [PTHR23063] ACETYLTRANSFERASE-RELATED; [PF01553] Acyltransferase; [GO:0016746] transferase activity, transferring acyl groups; [GO:0008152] metabolic process; [2.3.1.15] Glycerol-3-phosphate 1-O-acyltransferase.; [KOG2898] Predicted phosphate acyltransferase, contains PlsC domain73.030.5949
49 Mapoly0016s0008 [GO:0047617] acyl-CoA hydrolase activity; [K01068] palmitoyl-CoA hydrolase [EC:3.1.2.2]; [GO:0006637] acyl-CoA metabolic process; [PF00027] Cyclic nucleotide-binding domain; [3.1.2.2] Palmitoyl-CoA hydrolase.; [KOG3016] Acyl-CoA thioesterase; [PTHR11066] ACYL-COA THIOESTERASE; [PF13622] Thioesterase-like superfamily74.760.6253
50 Mapoly0060s0015 [PF00782] Dual specificity phosphatase, catalytic domain; [PTHR10343] 5'-AMP-ACTIVATED PROTEIN KINASE , BETA SUBUNIT; [GO:0006470] protein dephosphorylation; [GO:0008138] protein tyrosine/serine/threonine phosphatase activity75.420.6165
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