Guide Gene
- Gene ID
- Mapoly0003s0144
- Organism
- Marchantia polymorpha
- Platform ID
- Mpo
- Description
- [GO:0006355] regulation of transcription, DNA-dependent; [PF02671] Paired amphipathic helix repeat; [PTHR12346] SIN3B-RELATED; [PF08295] Sin3 family co-repressor; [GO:0005634] nucleus
Coexpressed Gene List
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Marchantia polymorphaRank Gene ID Description MR PCC Guide Mapoly0003s0144 [GO:0006355] regulation of transcription, DNA-dependent; [PF02671] Paired amphipathic helix repeat; [PTHR12346] SIN3B-RELATED; [PF08295] Sin3 family co-repressor; [GO:0005634] nucleus 0.00 1.0000 1 Mapoly0021s0057 [PF07303] Occludin homology domain 10.39 0.8205 2 Mapoly0096s0044 [PF14968] Coiled coil protein 84; [PTHR31198] FAMILY NOT NAMED 13.49 0.7662 3 Mapoly0037s0011 [PF12842] Domain of unknown function (DUF3819); [PF04054] CCR4-Not complex component, Not1; [PTHR13162:SF8] SUBFAMILY NOT NAMED; [PTHR13162] CCR4-NOT TRANSCRIPTION COMPLEX; [K12604] CCR4-NOT transcription complex subunit 1 14.63 0.8057 4 Mapoly0033s0026 [K11799] WD repeat-containing protein 21A; [GO:0005515] protein binding; [PTHR19845] KATANIN P80 SUBUNIT; [PF00400] WD domain, G-beta repeat 18.84 0.7821 5 Mapoly0072s0074 [GO:0003723] RNA binding; [PF02854] MIF4G domain; [GO:0005515] protein binding; [KOG2140] Uncharacterized conserved protein; [PTHR18034] CELL CYCLE CONTROL PROTEIN CWF22-RELATED; [PTHR18034:SF3] CELL CYCLE CONTROL PROTEIN CWF22; [K13100] pre-mRNA-splicing factor CWC22; [PF02847] MA3 domain 24.62 0.7963 6 Mapoly0075s0059 [GO:0005524] ATP binding; [KOG0296] Angio-associated migratory cell protein (contains WD40 repeats); [PF00069] Protein kinase domain; [PTHR13743] BEIGE/BEACH-RELATED; [GO:0005515] protein binding; [GO:0004672] protein kinase activity; [GO:0006468] protein phosphorylation; [PF02138] Beige/BEACH domain; [PF00400] WD domain, G-beta repeat 24.82 0.7854 7 Mapoly0030s0125 [PF08429] PLU-1-like protein; [GO:0003677] DNA binding; [GO:0055114] oxidation-reduction process; [KOG1246] DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain; [PF00628] PHD-finger; [GO:0005515] protein binding; [PF02373] JmjC domain, hydroxylase; [GO:0016706] oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors; [PTHR10694:SF8] RETINOBLASTOMA BINDING PROTEIN-RELATED; [PF01388] ARID/BRIGHT DNA binding domain; [GO:0005634] nucleus; [GO:0005622] intracellular; [PF02375] jmjN domain; [PTHR10694] JUMONJI DOMAIN CONTAINING PROTEIN; [PF02928] C5HC2 zinc finger 25.22 0.7791 8 Mapoly0016s0037 - 28.98 0.7609 9 Mapoly0005s0060 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [K11367] chromodomain-helicase-DNA-binding protein 1 [EC:3.6.4.12]; [PF13907] Domain of unknown function (DUF4208); [PTHR10799:SF70] CHROMODOMAIN HELICASE DNA BINDING PROTEIN; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00385] Chromo (CHRromatin Organisation MOdifier) domain; [PF00176] SNF2 family N-terminal domain; [3.6.4.12] DNA helicase.; [PF00271] Helicase conserved C-terminal domain; [KOG0384] Chromodomain-helicase DNA-binding protein 35.78 0.7783 10 Mapoly0028s0046 [GO:0005643] nuclear pore; [KOG0845] Nuclear pore complex, Nup98 component (sc Nup145/Nup100/Nup116); [GO:0006810] transport; [PF12110] Nuclear protein 96; [PF04096] Nucleoporin autopeptidase; [PTHR23198] NUCLEOPORIN 36.95 0.7787 11 Mapoly0064s0016 [GO:0003723] RNA binding; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED 38.83 0.7681 12 Mapoly0069s0010 [PF03835] Rad4 transglutaminase-like domain; [GO:0003677] DNA binding; [PF10405] Rad4 beta-hairpin domain 3; [PTHR12135] DNA REPAIR PROTEIN XP-C / RAD4; [GO:0006289] nucleotide-excision repair; [PF10404] Rad4 beta-hairpin domain 2; [GO:0005634] nucleus; [K10838] xeroderma pigmentosum group C-complementing protein; [KOG2179] Nucleotide excision repair complex XPC-HR23B, subunit XPC/DPB11; [GO:0003684] damaged DNA binding; [PF10403] Rad4 beta-hairpin domain 1 38.99 0.7492 13 Mapoly0011s0199 [PTHR13091:SF0] SUBFAMILY NOT NAMED; [PTHR13091] AMPLIFIED IN BREAST CANCER 2-RELATED; [GO:0000184] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; [PF10220] Uncharacterized conserved protein (DUF2146) 42.85 0.7779 14 Mapoly0102s0034 [GO:0008168] methyltransferase activity; [PTHR14741] S-ADENOSYLMETHIONINE-DEPENDENT METHYLTRANSFERASE RELATED; [2.1.1.-] Methyltransferases.; [GO:0009452] 7-methylguanosine RNA capping; [KOG2730] Methylase; [K14292] trimethylguanosine synthase [EC:2.1.1.-]; [PF09445] RNA cap guanine-N2 methyltransferase; [GO:0001510] RNA methylation 44.09 0.7590 15 Mapoly0048s0072 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [KOG0920] ATP-dependent RNA helicase A; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold 48.37 0.7682 16 Mapoly0030s0107 [KOG0110] RNA-binding protein (RRM superfamily); [PF14259] RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); [PTHR24011] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PF00076] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49.75 0.7658 17 Mapoly0015s0194 [PTHR12747] IKAPPAB KINASE COMPLEX-ASSOCIATED PROTEIN; [KOG1920] IkappaB kinase complex, IKAP component; [K11373] elongator complex protein 1; [PF04762] IKI3 family 50.10 0.7735 18 Mapoly0085s0035 [GO:0003677] DNA binding; [GO:0006355] regulation of transcription, DNA-dependent; [PTHR23329] TUFTELIN-INTERACTING PROTEIN 11-RELATED; [PF07842] GC-rich sequence DNA-binding factor-like protein; [KOG2184] Tuftelin-interacting protein TIP39, contains G-patch domain; [PF01585] G-patch domain; [PF12457] Tuftelin interacting protein N terminal; [GO:0005634] nucleus; [GO:0003676] nucleic acid binding; [PTHR23329:SF1] TUFTELIN INTERACTING PROTEIN 11; [K13103] tuftelin-interacting protein 11 51.61 0.7625 19 Mapoly0076s0093 [PTHR15668] JM1 PROTEIN; [PF05667] Protein of unknown function (DUF812) 51.96 0.7587 20 Mapoly0105s0061 [PF13893] RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 52.61 0.7654 21 Mapoly0190s0006 [KOG3794] CBF1-interacting corepressor CIR and related proteins; [PF10197] N-terminal domain of CBF1 interacting co-repressor CIR 55.47 0.7651 22 Mapoly0036s0148 [PTHR15000:SF1] SUBFAMILY NOT NAMED; [PTHR15000] FAMILY NOT NAMED 57.24 0.7601 23 Mapoly0117s0021 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 59.70 0.7706 24 Mapoly0113s0019 [KOG2354] RNA Polymerase C (III) 37 kDa subunit; [GO:0005634] nucleus; [PTHR12069] DNA-DIRECTED RNA POLYMERASES III 80 KDA POLYPEPTIDE (RNA POLYMERASE III SUBUNIT 5); [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04801] Sin-like protein conserved region 60.25 0.7428 25 Mapoly0067s0058 [GO:0008270] zinc ion binding; [PTHR23336] ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3.; [PF07496] CW-type Zinc Finger 64.31 0.7598 26 Mapoly0059s0106 [GO:0003677] DNA binding; [PF12937] F-box-like; [GO:0005524] ATP binding; [GO:0005515] protein binding; [GO:0008270] zinc ion binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG1001] Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily; [PF07496] CW-type Zinc Finger 65.82 0.7497 27 Mapoly0176s0001 [PTHR13793] PHD FINGER PROTEINS; [PF10513] Enhancer of polycomb-like 69.13 0.7582 28 Mapoly0013s0045 - 69.71 0.7480 29 Mapoly0138s0007 [PTHR10233:SF14] TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT DELTA; [GO:0044237] cellular metabolic process; [KOG1467] Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2); [PTHR10233] TRANSLATION INITIATION FACTOR EIF-2B; [PF01008] Initiation factor 2 subunit family; [K03680] translation initiation factor eIF-2B delta subunit 69.80 0.7561 30 Mapoly0049s0034 - 70.84 0.7585 31 Mapoly0005s0280 [PF01803] LIM-domain binding protein 71.44 0.7398 32 Mapoly0009s0169 [GO:0006355] regulation of transcription, DNA-dependent; [PF04494] WD40 associated region in TFIID subunit; [GO:0005515] protein binding; [K03130] transcription initiation factor TFIID subunit 5; [GO:0005634] nucleus; [PTHR19879] TRANSCRIPTION INITIATION FACTOR TFIID; [KOG0263] Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA); [PTHR19879:SF1] WD40 REPEAT PROTEIN; [PF00400] WD domain, G-beta repeat 72.55 0.7615 33 Mapoly0036s0084 [GO:0003677] DNA binding; [GO:0005524] ATP binding; [PTHR10799] SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY-RELATED; [PF00176] SNF2 family N-terminal domain; [KOG0387] Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain); [PF00271] Helicase conserved C-terminal domain; [PTHR10799:SF49] DNA EXCISION REPAIR PROTEIN ERCC-6 (COCKAYNE SYNDROME PROTEIN CSB); [K10841] DNA excision repair protein ERCC-6 73.27 0.7156 34 Mapoly0086s0009 [GO:0070461] SAGA-type complex; [PTHR21277] FAMILY NOT NAMED; [PF12767] Transcriptional regulator of RNA polII, SAGA, subunit 73.32 0.7511 35 Mapoly0035s0138 [PTHR10555] SORTING NEXIN; [PF00787] PX domain; [KOG1003] Actin filament-coating protein tropomyosin; [GO:0035091] phosphatidylinositol binding 73.63 0.7492 36 Mapoly0028s0111 [PF07797] Protein of unknown function (DUF1639) 77.36 0.7285 37 Mapoly0027s0115 [PF12656] DExH-box splicing factor binding site; [PTHR15818] G PATCH AND KOW-CONTAINING; [PTHR15818:SF2] SUBFAMILY NOT NAMED; [K13101] G patch domain and KOW motifs-containing protein 77.92 0.7393 38 Mapoly0144s0004 [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [KOG0745] Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily); [PF07724] AAA domain (Cdc48 subfamily); [GO:0009376] HslUV protease complex; [PTHR11262:SF3] ATP-DEPENDENT HSL PROTEASE ATP-BINDING SUBUNIT HSLU; [PTHR11262] HSL AND CLP PROTEASE; [GO:0016887] ATPase activity; [PF10431] C-terminal, D2-small domain, of ClpB protein; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0070011] peptidase activity, acting on L-amino acid peptides 78.33 0.7177 39 Mapoly0019s0056 [PF01535] PPR repeat; [PTHR24015] FAMILY NOT NAMED; [PF13041] PPR repeat family 81.31 0.7560 40 Mapoly0179s0025 [PF07719] Tetratricopeptide repeat; [PTHR23083] TETRATRICOPEPTIDE REPEAT PROTEIN, TPR 83.84 0.7509 41 Mapoly0104s0040 - 84.25 0.7278 42 Mapoly0006s0066 [PF01466] Skp1 family, dimerisation domain; [GO:0006511] ubiquitin-dependent protein catabolic process; [KOG1724] SCF ubiquitin ligase, Skp1 component; [PTHR11165] SKP1 84.59 0.7434 43 Mapoly0067s0042 [PTHR21494] ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 (ASC-1 COMPLEX SUBUNIT P100); [PF02845] CUE domain; [GO:0005515] protein binding; [PTHR21494:SF0] SUBFAMILY NOT NAMED; [KOG4501] Transcription coactivator complex, P100 component 87.78 0.7592 44 Mapoly0044s0018 [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [KOG0926] DEAH-box RNA helicase; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold 91.82 0.7532 45 Mapoly0051s0017 [PF04998] RNA polymerase Rpb1, domain 5; [GO:0003677] DNA binding; [PF00623] RNA polymerase Rpb1, domain 2; [PTHR19376:SF31] OS04G0572600 PROTEIN; [PTHR19376] DNA-DIRECTED RNA POLYMERASE; [PF05000] RNA polymerase Rpb1, domain 4; [GO:0008270] zinc ion binding; [K03018] DNA-directed RNA polymerase III subunit RPC1 [EC:2.7.7.6]; [GO:0032549] ribonucleoside binding; [GO:0005634] nucleus; [PF04997] RNA polymerase Rpb1, domain 1; [GO:0006351] transcription, DNA-dependent; [GO:0003899] DNA-directed RNA polymerase activity; [PF04983] RNA polymerase Rpb1, domain 3; [2.7.7.6] DNA-directed RNA polymerase.; [KOG0261] RNA polymerase III, large subunit 92.56 0.7506 46 Mapoly0002s0198 [PF13831] PHD-finger; [GO:0005515] protein binding; [PF13832] PHD-zinc-finger like domain; [PF00856] SET domain; [PTHR22884] SET DOMAIN PROTEINS 93.47 0.7485 47 Mapoly0139s0004 [PTHR23081] RNA POLYMERASE II CTD PHOSPHATASE; [KOG1605] TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation); [PF03031] NLI interacting factor-like phosphatase; [GO:0005515] protein binding; [PF00533] BRCA1 C Terminus (BRCT) domain 94.98 0.7277 48 Mapoly0045s0043 - 97.50 0.7465 49 Mapoly0138s0035 [PTHR11851] METALLOPROTEASE 99.64 0.7360 50 Mapoly0013s0152 [PTHR12436:SF4] LEUKOCYTE RECEPTOR CLUSTER (LRC) MEMBER 8; [KOG1861] Leucine permease transcriptional regulator; [PTHR12436] 80 KDA MCM3-ASSOCIATED PROTEIN; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family 99.95 0.7500