Download Gene Coexpression Data

Organism	Platform ID	Release Date	Number of Genes	Gene Model	Number of Samples	Coexpression Data	Codon Score *1	GO Score *2
Synechocystis sp. PCC 6803	PCC6803-R1-15-11	2015.11.09	3660	CyanoBase	18	Download	-	-
Synechococcus elongatus PCC 7942	PCC7942-R1-15-11	2015.11.09	2717	CyanoBase	34	Download	-	-
Anabaena sp. PCC 7120	PCC7120-M1-16-10	2016.10.14	5330	CyanoBase	116	Download	-	-

*1  :  Codon Score means the degree of coincidence between the gene coexpression and the codon usage similarity.

*2  :  GO Score means the degree of coincidence between the gene coexpression and the functional similarity.             

Data Format

Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Cre01g001400 in cre.v15-08.G15519-S172.quantile.mrgeo.d).

File Name

Cre01g001400

Line1

Cre03g197300    1.00    0.8352

Line2

Cre13g605200    6.63    0.6938

Line3

Cre09g411751    7.35    0.7082

Line4

Cre15g638551    9.38    0.7128

Line5

Cre01g037600    10.25    0.6761

• Columns are tab-deliminated.
• Lines are sorted by column2.
• Column1: ID of coexpressed gene.
• Column2: Matual Rank (MR). _{[smaller MR indicates stronger coexpression]}
• Column3: Pearson's Correlation Coefficient (PCC). _{[larger PCC indicates stronger coexpression]}