Download Gene Coexpression Data

Organism Platform ID Release Date Number of Genes Gene Model Number of Samples Coexpression Data Codon Score *1 GO Score *2
Synechocystis sp. PCC 6803 PCC6803-R1-15-11 2015.11.09 3660 CyanoBase 18 - -
Synechococcus elongatus PCC 7942 PCC7942-R1-15-11 2015.11.09 2717 CyanoBase 34 - -
Anabaena sp. PCC 7120 PCC7120-M1-16-10 2016.10.14 5330 CyanoBase 116 - -

*1  :  Codon Score means the degree of coincidence between the gene coexpression and the codon usage similarity.

*2  :  GO Score means the degree of coincidence between the gene coexpression and the functional similarity.             

Data Format

Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Cre01g001400 in cre.v15-08.G15519-S172.quantile.mrgeo.d).

File Name
Cre01g001400
Line1
Cre03g197300    1.00    0.8352
Line2
Cre13g605200    6.63    0.6938
Line3
Cre09g411751    7.35    0.7082
Line4
Cre15g638551    9.38    0.7128
Line5
Cre01g037600    10.25    0.6761
  • Columns are tab-deliminated.
  • Lines are sorted by column2.
  • Column1: ID of coexpressed gene.
  • Column2: Matual Rank (MR). [smaller MR indicates stronger coexpression]
  • Column3: Pearson's Correlation Coefficient (PCC). [larger PCC indicates stronger coexpression]