History

2016.05.16

Announcement

  • Due to scheduled maintenance, ALCOdb will be shutdown from 10:00 to 18:00 JST of May 17.
2016.04.08

Announcement

  • Due to scheduled maintenance, ALCOdb will be shutdown until 9 Apr, 18:00 JST.
2016.03.02

Announcement

  • Due to scheduled maintenance, ALCOdb will be shutdown for 3 days from 7 Mar, 12:00 JST.
2016.01.19

Activity

2015.12.07

Announcement

  • Due to scheduled maintenance, ALCOdb will be shutdown for 2 hours from 10 Dec, 14:00 JST.
2015.11.01

Update

  • Search page was updated. Sequence similarity search was made possible by the implementation of BLAST program. Keyward search was also improved to allow partial-match search.  Go »
  • Expression Profiler page was updated. The label of x-axis was changed from SRR identifiers to sample information. This allows users to interpret the graph more easily.  Go »
  • Coexpressed Gene List page and Coexpressed Gene Network page and were updated. The responsiveness of these pages were improved.

New Data

  • New coexpression data for C. reinhardtii was made available (Cre-R1-15-08). The coexpression data was calculated using 172 RNA-Seq data downloaded from SRA. This version achieved slightly better performance than previous version (Cre-R1-15-02) due to the elimination of redundant samples.
2015.09.03

Activity

2015.08.24

Announcement

  • Due to scheduled maintenance, ALCOdb will be shutdown for 2 days from 28 Aug, 19:00 JST.
2015.07.12

Activity

2015.06.19

New Function

  • New tool Expression Profiler was implemented. This tool show expression profile of individual genes under various conditions. Currently, this tool only available for C. reinhardtii genes. Access from Tools menu.  Go »
  • History page was implemented. This page provides change log and access log of ALCOdb. Access log will be updated monthly. Access from Information menu.  Go »

Update

  • Tutorial page was updated. Detailed information about each section of ALCOdb were added.  Go »
2015.06.15

Update

  • Coexpressed Gene Network page for each gene was updated. The gene annotation table for members of network genes was added.  Example »
  • Tutorial page was updated. The overview for gene coexpression analysis and coexpression databases was added. The scope of ALCOdb was also edited.  Go »
2015.05.22

Activity

2015.05.21

New Function

  • New tool DEGs Finder was implemented. This tool retrieve differentially expressed genes (DEGs) under certain conditions. Currently, this tool only available for C. reinhardtii genes. Access from Tools menu.  Go »
2015.03.24

New Function

  • Tutorial page was implemented. This page provides information about basic usage and some useful functions of ALCOdb. Currently, the scope of ALCOdb was only available. Access from Information menu.  Go »
  • About Us page was implemented. This page provides information about the ALCOdb developing team.  Go »
2015.03.16

Activity

2015.03.13

New Function

  • Gene Information page for each gene was implemented. This page provides functional annotation and sequence information.  Example »
  • Coexpressed Gene Network page for each gene was implemented. This page provides coexpressed gene network with interactive analysis platform. Currently, this page only available for C. reinhardtii and A. thaliana genes.  Example »
  • New tool Network Analyzer was implemented. This tool draw coexpressed gene network for user-defined gene set. Currently, this tool only available for C. reinhardtii and A. thaliana genes. Access from Tools menu.  Go »
2015.02.28

New Data

  • New coexpression data for C. reinhardtii was made available (Cre-R1-15-02). The coexpression data was calculated using 180 RNA-Seq data downloaded from SRA or released by our project group. The gene models to map short reads were also updated to JGI v5.5.
2014.10.08

New Data

  • Coexpression data for A. thaliana was retrieved from ATTED-II.
  • Orthologous gene pairs between microalgae and A. thaliana were obtained from reciprocal best hit analysis of BLASTP.

New Function

  • Coexpressed Gene List page for each gene was implemented. This page provides coexpressed gene list with their orthologous coexpression information.  Example »
2014.09.17

Activity

  • ALCOdb was opened.

New Data

  • New coexpression data for C. reinhardtii was made available (Cre-R1-13-10). The coexpression data was calculated using 137 RNA-Seq data downloaded from SRA. The JGI v5.3.1 gene models was utilized for mapping short reads.
  • New coexpression data for C. merolae were made available (Cme-M1-14-06, Cme-M2-14-06). The coexpression data were calculated using 75 and 48 Microarray data downloaded from GEO, respectively.

Access Log

  ALCOdb uses Google Analytics to gather statistical information about usage of the website. The collected data are only used to make access log and to improve end-user experience. Google Analytics collects only the IP address assigned to you on the date you visit this site, rather than your name or other identifying information. Although Google Analytics plants a permanent cookie on your web browser to identify you as a unique user the next time you visit this site, the cookie cannot be used by anyone but Google. Google's ability to use and share information collected by Google Analytics is restricted by the Google Privacy Policy. For more information about Google Analytics, visit http://www.google.com/analytics/.

Date
( Year-Month )		 No. of Total Access
( "Sessions" in Google Analytics )		 No. of Unique Access
( "New Users" in Google Analytics )
2016-01 (~2016.01.19) 134 12
2015-12 172 81
2015-11 170 30
2015-10 73 11
2015-09 49 41
2015-08 166 54
2015-07 120 44
2015-06 194 39
2015-05 121 43
2015-04 131 24
2015-03 15 8
2015-02 38 11