Download Gene Coexpression Data

Organism Platform ID Release Date Number of Genes Gene Model Number of Samples Coexpression Data Codon Score *1 GO Score *2
Chlamydomonas
reinhardtii
Cre-R1-15-08 2015.08.17 15519 JGI v5.5 172 1.68 6.07
Cre-R1-15-02 2015.02.28 15540 JGI v5.5 180 1.68 6.05
Cre-R1-13-10 2014.09.17 18773 JGI v5.3.1 137 1.48 5.17
Cyanidioschyzon
merolae
Cme-M1-14-06 2014.09.17 4586 C. merolae Genome Project 75 0.00 0.90
Cme-M2-14-06 2014.09.17 6506 C. merolae Genome Project 48 1.31 1.35

*1  :  Codon Score means the degree of coincidence between the gene coexpression and the codon usage similarity.

*2  :  GO Score means the degree of coincidence between the gene coexpression and the functional similarity.             

Data Format

Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Cre01g001400 in cre.v15-08.G15519-S172.quantile.mrgeo.d).

File Name
Cre01g001400
Line1
Cre03g197300    1.00    0.8352
Line2
Cre13g605200    6.63    0.6938
Line3
Cre09g411751    7.35    0.7082
Line4
Cre15g638551    9.38    0.7128
Line5
Cre01g037600    10.25    0.6761
  • Columns are tab-deliminated.
  • Lines are sorted by column2.
  • Column1: ID of coexpressed gene.
  • Column2: Matual Rank (MR). [smaller MR indicates stronger coexpression]
  • Column3: Pearson's Correlation Coefficient (PCC). [larger PCC indicates stronger coexpression]