Download Gene Coexpression Data
Organism Platform ID Release Date Number of Genes Gene Model Number of Samples Coexpression Data Codon Score *1 GO Score *2 Expression Table Chlamydomonas
reinhardtiiCre-R1-15-08 2015.08.17 15519 JGI v5.5 172 1.68 6.07 Cre-R1-15-02 2015.02.28 15540 JGI v5.5 180 1.68 6.05 - Cre-R1-13-10 2014.09.17 18773 JGI v5.3.1 137 1.48 5.17 - Cyanidioschyzon
merolaeCme-M1-14-06 2014.09.17 4586 C. merolae Genome Project 75 0.00 0.90 - Cme-M2-14-06 2014.09.17 6506 C. merolae Genome Project 48 1.31 1.35 - *1 : Codon Score means the degree of coincidence between the gene coexpression and the codon usage similarity.
*2 : GO Score means the degree of coincidence between the gene coexpression and the functional similarity.
Data Format
Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Cre01g001400 in cre.v15-08.G15519-S172.quantile.mrgeo.d).
- File Name
- Cre01g001400
- Line1
- Cre03g197300 1.00 0.8352
- Line2
- Cre13g605200 6.63 0.6938
- Line3
- Cre09g411751 7.35 0.7082
- Line4
- Cre15g638551 9.38 0.7128
- Line5
- Cre01g037600 10.25 0.6761
- Columns are tab-deliminated.
- Lines are sorted by column2.
- Column1: ID of coexpressed gene.
- Column2: Matual Rank (MR). [smaller MR indicates stronger coexpression]
- Column3: Pearson's Correlation Coefficient (PCC). [larger PCC indicates stronger coexpression]