Guide Gene

Gene ID
Mapoly0063s0060
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[2.6.1.42] Branched-chain-amino-acid transaminase.; [GO:0008152] metabolic process; [PTHR11825] SUBGROUP IIII AMINOTRANSFERASE; [PF01063] Aminotransferase class IV; [GO:0003824] catalytic activity; [K00826] branched-chain amino acid aminotransferase [EC:2.6.1.42]; [KOG0975] Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0063s0060 [2.6.1.42] Branched-chain-amino-acid transaminase.; [GO:0008152] metabolic process; [PTHR11825] SUBGROUP IIII AMINOTRANSFERASE; [PF01063] Aminotransferase class IV; [GO:0003824] catalytic activity; [K00826] branched-chain amino acid aminotransferase [EC:2.6.1.42]; [KOG0975] Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily 0.00 1.0000
1 Mapoly0001s0181 [PTHR10784] EUKARYOTIC TRANSLATION INITIATION FACTOR 6; [PTHR10784:SF0] EUKARYOTIC TRANSLATION INITIATION FACTOR 6; [K03264] translation initiation factor eIF-6; [GO:0042256] mature ribosome assembly; [GO:0043022] ribosome binding; [KOG3185] Translation initiation factor 6 (eIF-6); [PF01912] eIF-6 family1.000.9403
2 Mapoly0013s0064 [KOG1401] Acetylornithine aminotransferase; [PTHR11986] AMINOTRANSFERASE CLASS III; [GO:0030170] pyridoxal phosphate binding; [PTHR11986:SF23] ALANINE-GLYOXYLATE AMINOTRANSFERASE 2; [2.6.1.11] Acetylornithine transaminase.; [GO:0008483] transaminase activity; [PF00202] Aminotransferase class-III; [K00818] acetylornithine aminotransferase [EC:2.6.1.11]1.730.9092
3 Mapoly0138s0041 [PTHR30602] AMINO-ACID ACETYLTRANSFERASE; [2.3.1.1] Amino-acid N-acetyltransferase.; [K14682] amino-acid N-acetyltransferase [EC:2.3.1.1]; [GO:0008080] N-acetyltransferase activity; [PF00583] Acetyltransferase (GNAT) family; [PF00696] Amino acid kinase family; [KOG2436] Acetylglutamate kinase/acetylglutamate synthase3.160.9127
4 Mapoly0141s0032 [GO:0003723] RNA binding; [PF01985] CRS1 / YhbY (CRM) domain; [PTHR31846] FAMILY NOT NAMED3.460.8678
5 Mapoly0023s0164 [GO:0003723] RNA binding; [GO:0004523] ribonuclease H activity; [PF01351] Ribonuclease HII; [PTHR10954] RIBONUCLEASE H2 SUBUNIT A4.240.8494
6 Mapoly0002s0332 [KOG2367] Alpha-isopropylmalate synthase/homocitrate synthase; [PF00682] HMGL-like; [2.3.3.13] 2-isopropylmalate synthase.; [GO:0003852] 2-isopropylmalate synthase activity; [K01649] 2-isopropylmalate synthase [EC:2.3.3.13]; [GO:0009098] leucine biosynthetic process; [PTHR10277] HOMOCITRATE SYNTHASE-RELATED; [PTHR10277:SF9] 2-ISOPROPYLMALATE SYNTHASE; [PF08502] LeuA allosteric (dimerisation) domain; [GO:0003824] catalytic activity5.660.8960
7 Mapoly0044s0128 [K01687] dihydroxy-acid dehydratase [EC:4.2.1.9]; [PF00920] Dehydratase family; [KOG2448] Dihydroxy-acid dehydratase; [GO:0008152] metabolic process; [PTHR21000] DIHYDROXY-ACID DEHYDRATASE (DAD); [GO:0003824] catalytic activity; [4.2.1.9] Dihydroxy-acid dehydratase.6.710.8901
8 Mapoly0081s0061 [KOG0454] 3-isopropylmalate dehydratase (aconitase superfamily); [4.2.1.35] (R)-2-methylmalate dehydratase.; [4.2.1.33] 3-isopropylmalate dehydratase.; [K01703] 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35]; [GO:0008152] metabolic process; [PTHR11670] ACONITASE; [PF00330] Aconitase family (aconitate hydratase)6.930.8864
9 Mapoly0128s0010 [PTHR12749:SF0] SUBFAMILY NOT NAMED; [PTHR12749] EXCISION REPAIR CROSS-COMPLEMENTING 1 ERCC1; [PF14520] Helix-hairpin-helix domain; [PF03834] Binding domain of DNA repair protein Ercc1 (rad10/Swi10); [GO:0005634] nucleus; [GO:0006281] DNA repair; [GO:0003684] damaged DNA binding; [K10849] DNA excision repair protein ERCC-1; [KOG2841] Structure-specific endonuclease ERCC1-XPF, ERCC1 component; [GO:0004519] endonuclease activity7.070.8774
10 Mapoly0074s0061 -7.210.8224
11 Mapoly0066s0109 [K01887] arginyl-tRNA synthetase [EC:6.1.1.19]; [GO:0005524] ATP binding; [PTHR11956] ARGINYL-TRNA SYNTHETASE; [GO:0005737] cytoplasm; [PF05746] DALR anticodon binding domain; [GO:0000166] nucleotide binding; [PF03485] Arginyl tRNA synthetase N terminal domain; [GO:0006420] arginyl-tRNA aminoacylation; [6.1.1.19] Arginine--tRNA ligase.; [KOG4426] Arginyl-tRNA synthetase; [GO:0004814] arginine-tRNA ligase activity; [PTHR11956:SF1] ARGINYL-TRNA SYNTHETASE; [PF00750] tRNA synthetases class I (R)7.480.8849
12 Mapoly0007s0273 [PTHR30239:SF0] ACETOLACTATE SYNTHASE III, REGULATORY SUBUNIT; [2.2.1.6] Acetolactate synthase.; [PTHR30239] ACETOLACTATE SYNTHASE III, REGULATORY SUBUNIT; [K01653] acetolactate synthase I/III small subunit [EC:2.2.1.6]; [PF13710] ACT domain; [KOG2663] Acetolactate synthase, small subunit; [PF10369] Small subunit of acetolactate synthase8.060.8646
13 Mapoly0091s0003 [PF07719] Tetratricopeptide repeat; [GO:0005515] protein binding; [PF13414] TPR repeat; [GO:0030071] regulation of mitotic metaphase/anaphase transition; [KOG1155] Anaphase-promoting complex (APC), Cdc23 subunit; [PF13181] Tetratricopeptide repeat; [PF04049] Anaphase promoting complex subunit 8 / Cdc23; [GO:0005680] anaphase-promoting complex; [PF00515] Tetratricopeptide repeat; [K03355] anaphase-promoting complex subunit 8; [PTHR12558] CELL DIVISION CYCLE 16,23,27; [PTHR12558:SF10] CELL DIVISION CYCLE 239.220.8495
14 Mapoly0045s0031 [K01870] isoleucyl-tRNA synthetase [EC:6.1.1.5]; [GO:0005524] ATP binding; [6.1.1.5] Isoleucine--tRNA ligase.; [KOG0434] Isoleucyl-tRNA synthetase; [GO:0000166] nucleotide binding; [PF08264] Anticodon-binding domain of tRNA; [PTHR11946] ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES; [PTHR11946:SF11] SUBFAMILY NOT NAMED; [PF00133] tRNA synthetases class I (I, L, M and V); [GO:0006418] tRNA aminoacylation for protein translation; [GO:0004812] aminoacyl-tRNA ligase activity11.310.8835
15 Mapoly0141s0022 [PTHR30502] 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE; [PF03328] HpcH/HpaI aldolase/citrate lyase family; [GO:0003824] catalytic activity; [PTHR30502:SF0] 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE12.330.8088
16 Mapoly0082s0028 [K00620] glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1]; [GO:0006526] arginine biosynthetic process; [2.3.1.1] Amino-acid N-acetyltransferase.; [PTHR23100:SF0] SUBFAMILY NOT NAMED; [GO:0004358] glutamate N-acetyltransferase activity; [PTHR23100] ARGININE BIOSYNTHESIS BIFUNCTIONAL PROTEIN ARGJ; [PF01960] ArgJ family; [2.3.1.35] Glutamate N-acetyltransferase.; [KOG2786] Putative glutamate/ornithine acetyltransferase12.410.8321
17 Mapoly0067s0012 -12.850.7917
18 Mapoly0071s0110 [GO:0042393] histone binding; [PF02182] SAD/SRA domain; [PTHR14140] E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED12.850.8721
19 Mapoly0050s0070 [GO:0016020] membrane; [PF01758] Sodium Bile acid symporter family; [GO:0008508] bile acid:sodium symporter activity; [GO:0006814] sodium ion transport; [K03453] bile acid:Na+ symporter, BASS family; [KOG2718] Na+-bile acid cotransporter; [PTHR10361] SODIUM-BILE ACID COTRANSPORTER14.700.8213
20 Mapoly0041s0072 [PF03803] Scramblase; [PTHR23248] PHOSPHOLIPID SCRAMBLASE-RELATED14.830.8407
21 Mapoly0164s0014 [KOG0341] DEAD-box protein abstrakt; [GO:0005524] ATP binding; [K13116] ATP-dependent RNA helicase DDX41 [EC:3.6.4.13]; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding; [PTHR24031:SF20] SUBFAMILY NOT NAMED15.590.8810
22 Mapoly0047s0046 [KOG2740] Clathrin-associated protein medium chain; [GO:0016192] vesicle-mediated transport; [K12398] AP-3 complex subunit mu; [GO:0005515] protein binding; [PTHR11998] CLATHRIN COAT ASSEMBLY PROTEIN; [PF00928] Adaptor complexes medium subunit family; [GO:0030131] clathrin adaptor complex; [GO:0006886] intracellular protein transport; [PTHR11998:SF4] CLATHRIN COAT ADAPTOR AP3 MEDIUM CHAIN18.710.8543
23 Mapoly0015s0189 [K14289] exportin-5; [PTHR11223:SF3] EXPORTIN 5; [PTHR11223] EXPORTIN 1/5; [PF08389] Exportin 1-like protein19.180.8506
24 Mapoly1495s0001 [GO:0032324] molybdopterin cofactor biosynthetic process; [GO:0006777] Mo-molybdopterin cofactor biosynthetic process; [PF03454] MoeA C-terminal region (domain IV); [PF00994] Probable molybdopterin binding domain; [PTHR10192] MOLYBDOPTERIN BIOSYNTHESIS PROTEIN; [PF03453] MoeA N-terminal region (domain I and II); [KOG2371] Molybdopterin biosynthesis protein; [K03750] molybdopterin biosynthesis protein MoeA19.900.8160
25 Mapoly0112s0059 [GO:0005524] ATP binding; [KOG0328] Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily; [PTHR24031:SF57] SUBFAMILY NOT NAMED; [3.6.4.13] RNA helicase.; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [K13025] ATP-dependent RNA helicase [EC:3.6.4.13]; [PTHR24031] FAMILY NOT NAMED; [GO:0003676] nucleic acid binding20.350.7848
26 Mapoly0059s0059 [PTHR23422] DIPEPTIDYL PEPTIDASE III-RELATED; [GO:0016787] hydrolase activity; [PF03571] Peptidase family M49; [PF00293] NUDIX domain21.070.7411
27 Mapoly0034s0109 [GO:0006396] RNA processing; [KOG3833] Uncharacterized conserved protein, contains RtcB domain; [PTHR11118] UNCHARACTERIZED; [PF01139] tRNA-splicing ligase RtcB; [GO:0008452] RNA ligase activity22.270.8195
28 Mapoly0044s0101 [KOG1296] Uncharacterized conserved protein; [PF05907] Eukaryotic protein of unknown function (DUF866); [PTHR12857] UNCHARACTERIZED; [PTHR12857:SF0] SUBFAMILY NOT NAMED23.070.7811
29 Mapoly0005s0065 [PTHR11227] WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES (WIPI)-RELATED; [GO:0005515] protein binding; [PTHR11227:SF25] SUBFAMILY NOT NAMED; [PF00400] WD domain, G-beta repeat; [KOG2111] Uncharacterized conserved protein, contains WD40 repeats24.190.7885
30 Mapoly0134s0030 [3.1.2.15] Ubiquitin thiolesterase.; [PF00443] Ubiquitin carboxyl-terminal hydrolase; [GO:0005515] protein binding; [GO:0006511] ubiquitin-dependent protein catabolic process; [K11843] ubiquitin carboxyl-terminal hydrolase 14 [EC:3.1.2.15]; [PF00240] Ubiquitin family; [PTHR24006] FAMILY NOT NAMED; [KOG1872] Ubiquitin-specific protease24.680.8204
31 Mapoly0015s0049 [PF09353] Domain of unknown function (DUF1995)27.020.7834
32 Mapoly0003s0263 [GO:0003755] peptidyl-prolyl cis-trans isomerase activity; [PTHR11071] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [PF00160] Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; [GO:0000413] protein peptidyl-prolyl isomerization; [KOG0884] Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase; [GO:0006457] protein folding; [5.2.1.8] Peptidylprolyl isomerase.; [K12734] peptidyl-prolyl cis-trans isomerase-like 3 [EC:5.2.1.8]28.250.7909
33 Mapoly0067s0022 [PTHR12746] NONSENSE-MEDIATED MRNA DECAY PROTEIN 3; [KOG2613] NMD protein affecting ribosome stability and mRNA decay; [PTHR12746:SF2] gb def: Hypothetical protein; [K07562] nonsense-mediated mRNA decay protein 3; [PF04981] NMD3 family28.460.8538
34 Mapoly0015s0143 [PF12204] Domain of unknown function (DUF3598)28.530.8105
35 Mapoly0011s0180 [GO:0005524] ATP binding; [GO:0016021] integral to membrane; [PTHR24223] FAMILY NOT NAMED; [PF00664] ABC transporter transmembrane region; [GO:0016887] ATPase activity; [GO:0006810] transport; [GO:0055085] transmembrane transport; [KOG0054] Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily; [GO:0042626] ATPase activity, coupled to transmembrane movement of substances; [PF00005] ABC transporter28.720.8229
36 Mapoly0016s0099 [PTHR11839:SF1] ADP-RIBOSE PYROPHOSPHATASE; [GO:0016787] hydrolase activity; [PTHR11839] UDP/ADP-SUGAR PYROPHOSPHATASE; [PF00293] NUDIX domain31.750.7838
37 Mapoly0137s0034 [PF02676] Methyltransferase TYW3; [PTHR23245] UNCHARACTERIZED; [PF13415] Galactose oxidase, central domain; [KOG1227] Putative methyltransferase; [PF02475] Met-10+ like-protein; [GO:0016740] transferase activity32.030.8479
38 Mapoly0005s0182 [PF02784] Pyridoxal-dependent decarboxylase, pyridoxal binding domain; [PTHR11482:SF5] DIAMINOPIMELATE DECARBOXYLASE; [PF00278] Pyridoxal-dependent decarboxylase, C-terminal sheet domain; [KOG0622] Ornithine decarboxylase; [PTHR11482] ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE; [4.1.1.20] Diaminopimelate decarboxylase.; [GO:0003824] catalytic activity; [K01586] diaminopimelate decarboxylase [EC:4.1.1.20]33.470.8072
39 Mapoly0046s0099 [GO:0005524] ATP binding; [PF02889] Sec63 Brl domain; [PTHR11752] HELICASE SKI2W; [PTHR11752:SF8] ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 3, HELC1; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [KOG0952] DNA/RNA helicase MER3/SLH1, DEAD-box superfamily; [GO:0003676] nucleic acid binding; [K01529] dynamin GTPase [EC:3.6.5.5]; [3.6.1.-] In phosphorous-containing anhydrides.34.290.7910
40 Mapoly0019s0065 [GO:0008652] cellular amino acid biosynthetic process; [GO:0055114] oxidation-reduction process; [GO:0009082] branched-chain amino acid biosynthetic process; [GO:0016491] oxidoreductase activity; [PF07991] Acetohydroxy acid isomeroreductase, catalytic domain; [1.1.1.86] Ketol-acid reductoisomerase.; [GO:0004455] ketol-acid reductoisomerase activity; [PTHR21371] FAMILY NOT NAMED; [K00053] ketol-acid reductoisomerase [EC:1.1.1.86]; [PTHR21371:SF1] SUBFAMILY NOT NAMED; [PF01450] Acetohydroxy acid isomeroreductase, catalytic domain35.200.7901
41 Mapoly0083s0005 [PF05773] RWD domain; [GO:0005524] ATP binding; [GO:0004386] helicase activity; [PTHR18934] ATP-DEPENDENT RNA HELICASE; [PF00035] Double-stranded RNA binding motif; [GO:0005515] protein binding; [KOG0920] ATP-dependent RNA helicase A; [PF00270] DEAD/DEAH box helicase; [PF00271] Helicase conserved C-terminal domain; [PF04408] Helicase associated domain (HA2); [GO:0003676] nucleic acid binding; [PF07717] Oligonucleotide/oligosaccharide-binding (OB)-fold35.570.8316
42 Mapoly0093s0036 [PTHR21622] COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 4; [PTHR21622:SF0] SUBFAMILY NOT NAMED; [KOG4149] Uncharacterized conserved protein35.710.7813
43 Mapoly0088s0065 [PF12756] C2H2 type zinc-finger (2 copies); [PF12171] Zinc-finger double-stranded RNA-binding; [KOG0717] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PTHR24078] DNAJ HOMOLOG SUBFAMILY C MEMBER; [K09506] DnaJ homolog subfamily A member 537.230.8404
44 Mapoly0001s0385 [PTHR31636] FAMILY NOT NAMED; [PF03514] GRAS domain family37.420.7446
45 Mapoly0140s0002 -38.880.8109
46 Mapoly0001s0104 [GO:0008152] metabolic process; [PTHR11670] ACONITASE; [4.2.1.35] (R)-2-methylmalate dehydratase.; [PF00694] Aconitase C-terminal domain; [4.2.1.33] 3-isopropylmalate dehydratase.; [K01704] 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35]40.630.7501
47 Mapoly0011s0212 [PF00291] Pyridoxal-phosphate dependent enzyme; [KOG1395] Tryptophan synthase beta chain; [PTHR10314] SER/THR DEHYDRATASE, TRP SYNTHASE41.330.7525
48 Mapoly0001s0234 [PTHR21230] VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED; [KOG3251] Golgi SNAP receptor complex member; [K08496] golgi SNAP receptor complex member 2; [PF12352] Snare region anchored in the vesicle membrane C-terminus; [PTHR21230:SF1] MEMBRIN41.410.8116
49 Mapoly0007s0192 [3.4.24.-] Metalloendopeptidases.; [GO:0004222] metalloendopeptidase activity; [GO:0005524] ATP binding; [PF06480] FtsH Extracellular; [K08956] AFG3 family protein [EC:3.4.24.-]; [KOG0731] AAA+-type ATPase containing the peptidase M41 domain; [PF01434] Peptidase family M41; [GO:0008270] zinc ion binding; [GO:0016021] integral to membrane; [PTHR23076] METALLOPROTEASE M41 FTSH; [PF00004] ATPase family associated with various cellular activities (AAA); [GO:0006508] proteolysis41.640.8135
50 Mapoly0014s0147 [PTHR10072] IRON-SULFUR CLUSTER ASSEMBLY PROTEIN44.430.8010
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