Guide Gene

Gene ID
Mapoly0050s0103
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[PF00919] Uncharacterized protein family UPF0004; [PTHR11918:SF43] PREDICTED: SIMILAR TO GA19679-PA, PARTIAL; [PF04055] Radical SAM superfamily; [GO:0051539] 4 iron, 4 sulfur cluster binding; [GO:0009451] RNA modification; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding; [KOG2492] CDK5 activator-binding protein; [PTHR11918] RADICAL SAM PROTEINS

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0050s0103 [PF00919] Uncharacterized protein family UPF0004; [PTHR11918:SF43] PREDICTED: SIMILAR TO GA19679-PA, PARTIAL; [PF04055] Radical SAM superfamily; [GO:0051539] 4 iron, 4 sulfur cluster binding; [GO:0009451] RNA modification; [GO:0003824] catalytic activity; [GO:0051536] iron-sulfur cluster binding; [KOG2492] CDK5 activator-binding protein; [PTHR11918] RADICAL SAM PROTEINS 0.00 1.0000
1 Mapoly0004s0030 [PTHR19370] NADH-CYTOCHROME B5 REDUCTASE; [GO:0055114] oxidation-reduction process; [KOG0534] NADH-cytochrome b-5 reductase; [PF00175] Oxidoreductase NAD-binding domain; [GO:0016491] oxidoreductase activity1.410.9024
2 Mapoly0005s0040 [PF02978] Signal peptide binding domain; [GO:0048500] signal recognition particle; [PF00448] SRP54-type protein, GTPase domain; [GO:0008312] 7S RNA binding; [K03106] signal recognition particle subunit SRP54; [KOG0780] Signal recognition particle, subunit Srp54; [GO:0003924] GTPase activity; [GO:0006614] SRP-dependent cotranslational protein targeting to membrane; [PTHR11564:SF7] SIGNAL RECOGNITION PARTICLE PROTEIN; [PF02881] SRP54-type protein, helical bundle domain; [GO:0005525] GTP binding; [PTHR11564] GTPASE CONTAINING FAMILY OF SIGNAL RECOGNITION PARTICLE PROTEINS2.000.8972
3 Mapoly0007s0202 [PF00650] CRAL/TRIO domain; [PTHR10174] RETINALDEHYDE BINDING PROTEIN-RELATED; [KOG1470] Phosphatidylinositol transfer protein PDR16 and related proteins3.610.8324
4 Mapoly0029s0085 [PF00091] Tubulin/FtsZ family, GTPase domain; [PTHR30314] CELL DIVISION PROTEIN FTSZ-RELATED; [K03531] cell division protein FtsZ; [PF12327] FtsZ family, C-terminal domain4.000.8492
5 Mapoly0058s0049 [PF13460] NADH(P)-binding; [KOG1203] Predicted dehydrogenase; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED4.240.8834
6 Mapoly0086s0021 [PF00226] DnaJ domain; [PTHR24077] FAMILY NOT NAMED4.470.8784
7 Mapoly0163s0012 [GO:0003723] RNA binding; [GO:0005524] ATP binding; [PF00579] tRNA synthetases class I (W and Y); [PTHR11766:SF0] SUBFAMILY NOT NAMED; [GO:0000166] nucleotide binding; [KOG2623] Tyrosyl-tRNA synthetase; [K01866] tyrosyl-tRNA synthetase [EC:6.1.1.1]; [PTHR11766] TYROSYL-TRNA SYNTHETASE; [6.1.1.1] Tyrosine--tRNA ligase.; [GO:0006418] tRNA aminoacylation for protein translation; [PF01479] S4 domain; [GO:0004831] tyrosine-tRNA ligase activity; [GO:0004812] aminoacyl-tRNA ligase activity4.690.8367
8 Mapoly0031s0030 [PF02575] YbaB/EbfC DNA-binding family4.900.8832
9 Mapoly0169s0014 -6.000.8487
10 Mapoly0021s0074 -7.750.8445
11 Mapoly0005s0181 [GO:0016876] ligase activity, forming aminoacyl-tRNA and related compounds; [PF00749] tRNA synthetases class I (E and Q), catalytic domain; [GO:0005524] ATP binding; [GO:0005737] cytoplasm; [GO:0000166] nucleotide binding; [GO:0043039] tRNA aminoacylation; [6.1.1.17] Glutamate--tRNA ligase.; [KOG1149] Glutamyl-tRNA synthetase (mitochondrial); [PTHR10119] GLUTAMYL/GLUTAMINYL-TRNA SYNTHETASE; [K01885] glutamyl-tRNA synthetase [EC:6.1.1.17]10.910.8495
12 Mapoly0084s0078 [PF01926] 50S ribosome-binding GTPase; [KOG1491] Predicted GTP-binding protein (ODN superfamily); [PF06071] Protein of unknown function (DUF933); [K06942] ribosomal RNA large subunit methyltransferase N [EC:2.1.1.-]; [PTHR23305] GTP-BINDING PROTEIN-RELATED; [GO:0005525] GTP binding11.750.8578
13 Mapoly0066s0016 [GO:0016021] integral to membrane; [PF03040] CemA family14.420.7686
14 Mapoly0001s0386 [GO:0000287] magnesium ion binding; [KOG0786] 3-isopropylmalate dehydrogenase; [1.1.1.85] 3-isopropylmalate dehydrogenase.; [GO:0055114] oxidation-reduction process; [PF00180] Isocitrate/isopropylmalate dehydrogenase; [K00052] 3-isopropylmalate dehydrogenase [EC:1.1.1.85]; [GO:0016616] oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; [PTHR11835] DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE; [GO:0051287] NAD binding15.490.8222
15 Mapoly0008s0035 -16.120.8176
16 Mapoly0054s0013 [PF12046] Protein of unknown function (DUF3529)24.190.8248
17 Mapoly0020s0120 [K03686] molecular chaperone DnaJ; [GO:0031072] heat shock protein binding; [KOG0715] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PF01556] DnaJ C terminal domain; [PTHR24076] FAMILY NOT NAMED; [PF00684] DnaJ central domain; [GO:0051082] unfolded protein binding27.060.8337
18 Mapoly0037s0028 [GO:0016020] membrane; [PF01148] Cytidylyltransferase family; [PTHR13773] PHOSPHATIDATE CYTIDYLYLTRANSFERASE; [GO:0016772] transferase activity, transferring phosphorus-containing groups29.090.8026
19 Mapoly0151s0033 [PTHR11079] CYTOSINE DEAMINASE; [GO:0009231] riboflavin biosynthetic process; [GO:0008703] 5-amino-6-(5-phosphoribosylamino)uracil reductase activity; [GO:0055114] oxidation-reduction process; [PF01872] RibD C-terminal domain; [PF08719] Domain of unknown function (DUF1768)29.390.7674
20 Mapoly0066s0055 [PF04278] Tic22-like family30.400.8171
21 Mapoly0035s0041 [PTHR14009] LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN; [PF07766] LETM1-like protein30.580.7780
22 Mapoly0142s0028 [KOG4409] Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily); [PTHR10992] ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN; [PF00561] alpha/beta hydrolase fold30.980.8023
23 Mapoly0013s0203 [PTHR24089] FAMILY NOT NAMED; [PF00153] Mitochondrial carrier protein; [PTHR24089:SF45] SUBFAMILY NOT NAMED; [KOG0768] Mitochondrial carrier protein PET831.750.8186
24 Mapoly0103s0019 [GO:0009523] photosystem II; [PTHR31407] FAMILY NOT NAMED; [GO:0019898] extrinsic to membrane; [GO:0009654] oxygen evolving complex; [PF01789] PsbP; [GO:0005509] calcium ion binding; [GO:0015979] photosynthesis32.560.8203
25 Mapoly0065s0083 [GO:0005524] ATP binding; [KOG2355] Predicted ABC-type transport, ATPase component/CCR4 associated factor; [PTHR24220] FAMILY NOT NAMED; [PTHR24220:SF85] FE(3+) IONS IMPORT ATP-BINDING PROTEIN FBPC; [GO:0016887] ATPase activity; [K09013] Fe-S cluster assembly ATP-binding protein; [PF00005] ABC transporter34.000.8122
26 Mapoly0015s0090 [GO:0009058] biosynthetic process; [PF00534] Glycosyl transferases group 1; [PF08323] Starch synthase catalytic domain; [PTHR12526] GLYCOSYLTRANSFERASE36.330.7960
27 Mapoly0059s0086 [GO:0016020] membrane; [KOG4267] Predicted membrane protein; [PTHR12668] TRANSMEMBRANE PROTEIN 14, 15; [PF03647] Transmembrane proteins 14C36.770.7993
28 Mapoly0025s0103 [GO:0015035] protein disulfide oxidoreductase activity; [GO:0045454] cell redox homeostasis; [PF00085] Thioredoxin; [GO:0006662] glycerol ether metabolic process; [KOG0907] Thioredoxin; [PTHR10438] THIOREDOXIN37.150.8167
29 Mapoly0001s0404 [1.8.1.7] Glutathione-disulfide reductase.; [GO:0050660] flavin adenine dinucleotide binding; [KOG0405] Pyridine nucleotide-disulphide oxidoreductase; [PTHR22912] DISULFIDE OXIDOREDUCTASE; [GO:0055114] oxidation-reduction process; [GO:0045454] cell redox homeostasis; [PF00070] Pyridine nucleotide-disulphide oxidoreductase; [GO:0016491] oxidoreductase activity; [K00383] glutathione reductase (NADPH) [EC:1.8.1.7]; [PF02852] Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; [PF07992] Pyridine nucleotide-disulphide oxidoreductase37.950.7619
30 Mapoly0030s0106 [GO:0031072] heat shock protein binding; [KOG0715] Molecular chaperone (DnaJ superfamily); [PF00226] DnaJ domain; [PF01556] DnaJ C terminal domain; [PTHR24076] FAMILY NOT NAMED; [PF00684] DnaJ central domain; [GO:0051082] unfolded protein binding38.370.8037
31 Mapoly0031s0065 [GO:0005524] ATP binding; [KOG0651] 26S proteasome regulatory complex, ATPase RPT4; [PF00004] ATPase family associated with various cellular activities (AAA); [PTHR32429] FAMILY NOT NAMED41.020.8128
32 Mapoly0007s0136 [GO:0005737] cytoplasm; [PTHR11476] HISTIDYL-TRNA SYNTHETASE; [PF13393] Histidyl-tRNA synthetase41.570.8156
33 Mapoly0132s0048 -42.210.7971
34 Mapoly0005s0149 [4.4.1.8] Cystathionine beta-lyase.; [GO:0071266] 'de novo' L-methionine biosynthetic process; [PTHR11808] TRANS-SULFURATION ENZYME FAMILY MEMBER; [GO:0030170] pyridoxal phosphate binding; [PF01053] Cys/Met metabolism PLP-dependent enzyme; [K01760] cystathionine beta-lyase [EC:4.4.1.8]; [GO:0004121] cystathionine beta-lyase activity; [KOG0053] Cystathionine beta-lyases/cystathionine gamma-synthases; [PTHR11808:SF18] CYSTATHIONINE BETA-LYASE (BETA-CYSTATHIONASE)42.330.7653
35 Mapoly0035s0034 [K01939] adenylosuccinate synthase [EC:6.3.4.4]; [KOG1355] Adenylosuccinate synthase; [PF00709] Adenylosuccinate synthetase; [PTHR11846:SF0] ADENYLOSUCCINATE SYNTHETASE; [6.3.4.4] Adenylosuccinate synthase.; [PTHR11846] ADENYLOSUCCINATE SYNTHETASE; [GO:0006164] purine nucleotide biosynthetic process; [GO:0005525] GTP binding; [GO:0004019] adenylosuccinate synthase activity44.090.7796
36 Mapoly0024s0117 -45.090.8204
37 Mapoly0173s0013 [KOG1662] Mitochondrial F1F0-ATP synthase, subunit OSCP/ATP5; [PTHR11910:SF1] ATP SYNTHASE DELTA CHAIN; [GO:0046933] proton-transporting ATP synthase activity, rotational mechanism; [PTHR11910] ATP SYNTHASE DELTA CHAIN; [GO:0015986] ATP synthesis coupled proton transport; [PF00213] ATP synthase delta (OSCP) subunit46.380.7233
38 Mapoly0107s0036 [PTHR11659] GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (MITOCHONDRIAL AND PROKARYOTIC) PET112-RELATED; [PF02637] GatB domain; [GO:0016874] ligase activity; [PTHR11659:SF1] GLUTAMYL-TRNA AMIDOTRANSFERASE SUBUNIT B; [GO:0016884] carbon-nitrogen ligase activity, with glutamine as amido-N-donor; [6.3.5.7] Glutaminyl-tRNA synthase (glutamine-hydrolyzing).; [PF02934] GatB/GatE catalytic domain; [6.3.5.6] Asparaginyl-tRNA synthase (glutamine-hydrolyzing).; [KOG2438] Glutamyl-tRNA amidotransferase subunit B; [K02434] aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]47.050.7782
39 Mapoly0030s0153 [PF13460] NADH(P)-binding; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED47.180.7989
40 Mapoly0029s0077 [KOG1211] Amidases; [PTHR11895] AMIDASE; [GO:0016884] carbon-nitrogen ligase activity, with glutamine as amido-N-donor; [PTHR11895:SF7] GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A; [PF01425] Amidase48.640.7746
41 Mapoly0049s0025 [K10249] elongation of very long chain fatty acids protein 4; [KOG3071] Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme; [GO:0016021] integral to membrane; [PTHR11157] FATTY ACID ACYL TRANSFERASE-RELATED; [PF01151] GNS1/SUR4 family48.660.7844
42 Mapoly0066s0105 [3.1.3.11] Fructose-bisphosphatase.; [GO:0005975] carbohydrate metabolic process; [GO:0042132] fructose 1,6-bisphosphate 1-phosphatase activity; [PTHR11556] FRUCTOSE-1,6-BISPHOSPHATASE-RELATED; [GO:0042578] phosphoric ester hydrolase activity; [K03841] fructose-1,6-bisphosphatase I [EC:3.1.3.11]; [PF00316] Fructose-1-6-bisphosphatase; [KOG1458] Fructose-1,6-bisphosphatase48.970.7333
43 Mapoly0147s0023 [KOG0541] Alkyl hydroperoxide reductase/peroxiredoxin; [PTHR10430:SF10] PEROXIREDOXIN; [GO:0016491] oxidoreductase activity; [GO:0006457] protein folding; [PF00254] FKBP-type peptidyl-prolyl cis-trans isomerase; [PF08534] Redoxin; [PTHR10430] PEROXIREDOXIN49.420.8101
44 Mapoly0009s0214 [PF05421] Protein of unknown function (DUF751)49.860.8200
45 Mapoly0118s0023 -51.230.8180
46 Mapoly0003s0001 [K04567] lysyl-tRNA synthetase, class II [EC:6.1.1.6]; [GO:0005524] ATP binding; [6.1.1.6] Lysine--tRNA ligase.; [GO:0000166] nucleotide binding; [PTHR22594] ASPARTYL/LYSYL-TRNA SYNTHETASE; [GO:0003676] nucleic acid binding; [PF01336] OB-fold nucleic acid binding domain; [GO:0006418] tRNA aminoacylation for protein translation; [KOG1885] Lysyl-tRNA synthetase (class II); [GO:0004812] aminoacyl-tRNA ligase activity; [PF00152] tRNA synthetases class II (D, K and N)51.960.7932
47 Mapoly0045s0081 [GO:0003723] RNA binding; [PTHR23270] PROGRAMMED CELL DEATH PROTEIN 11 (PRE-RRNA PROCESSING PROTEIN RRP5); [PF00575] S1 RNA binding domain52.970.8192
48 Mapoly0062s0099 [PF14237] Domain of unknown function (DUF4339)53.190.8069
49 Mapoly0125s0036 [PF11833] Protein of unknown function (DUF3353)53.240.8175
50 Mapoly0091s0025 [PF00574] Clp protease; [PTHR10381] ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; [KOG0840] ATP-dependent Clp protease, proteolytic subunit53.480.8059
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