Guide Gene

Gene ID
Mapoly0015s0157
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0006511] ubiquitin-dependent protein catabolic process; [K14016] ubiquitin fusion degradation protein 1; [KOG1816] Ubiquitin fusion-degradation protein; [PTHR12555] UBIQUITIN FUSION DEGRADATON PROTEIN 1; [PF03152] Ubiquitin fusion degradation protein UFD1

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0015s0157 [GO:0006511] ubiquitin-dependent protein catabolic process; [K14016] ubiquitin fusion degradation protein 1; [KOG1816] Ubiquitin fusion-degradation protein; [PTHR12555] UBIQUITIN FUSION DEGRADATON PROTEIN 1; [PF03152] Ubiquitin fusion degradation protein UFD1 0.00 1.0000
1 Mapoly0140s0024 [K06689] ubiquitin-conjugating enzyme E2 D/E [EC:6.3.2.19]; [GO:0016881] acid-amino acid ligase activity; [PTHR24068] FAMILY NOT NAMED; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0417] Ubiquitin-protein ligase; [PF00179] Ubiquitin-conjugating enzyme3.740.8474
2 Mapoly0011s0107 -15.560.8209
3 Mapoly0062s0003 [K10580] ubiquitin-conjugating enzyme E2 N [EC:6.3.2.19]; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0417] Ubiquitin-protein ligase; [PF00179] Ubiquitin-conjugating enzyme15.810.8212
4 Mapoly0153s0026 [PF00650] CRAL/TRIO domain; [PTHR10174] RETINALDEHYDE BINDING PROTEIN-RELATED; [KOG1471] Phosphatidylinositol transfer protein SEC14 and related proteins15.970.8171
5 Mapoly0081s0078 [KOG3325] Membrane coat complex Retromer, subunit VPS29/PEP11; [PTHR11124] VACUOLAR SORTING PROTEIN VPS29; [PF12850] Calcineurin-like phosphoesterase superfamily domain; [K07095] putative glycerol-1-phosphate prenyltransferase [EC:2.5.1.-]17.320.8315
6 Mapoly0122s0005 [K10579] ubiquitin-conjugating enzyme E2 M [EC:6.3.2.19]; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [6.3.2.19] Ubiquitin--protein ligase.; [KOG0420] Ubiquitin-protein ligase; [PF00179] Ubiquitin-conjugating enzyme17.490.8219
7 Mapoly0073s0056 [GO:0005737] cytoplasm; [GO:0003743] translation initiation factor activity; [KOG3252] Uncharacterized conserved protein; [PTHR13022] EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11; [GO:0005852] eukaryotic translation initiation factor 3 complex; [PF03399] SAC3/GANP/Nin1/mts3/eIF-3 p25 family18.170.8438
8 Mapoly0077s0013 [K10704] ubiquitin-conjugating enzyme E2 variant; [PTHR24067] UBIQUITIN-CONJUGATING ENZYME E2; [GO:0016881] acid-amino acid ligase activity; [KOG0896] Ubiquitin-conjugating enzyme E2; [PF00179] Ubiquitin-conjugating enzyme18.520.7893
9 Mapoly0072s0029 [GO:0003723] RNA binding; [GO:0008408] 3'-5' exonuclease activity; [PF01612] 3'-5' exonuclease; [PF00013] KH domain; [GO:0006139] nucleobase-containing compound metabolic process; [GO:0003676] nucleic acid binding; [PTHR12124] POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED18.710.8318
10 Mapoly0026s0131 [GO:0005840] ribosome; [PF01907] Ribosomal protein L37e; [K02922] large subunit ribosomal protein L37e; [PTHR10768] 60S RIBOSOMAL PROTEIN L37; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [KOG3475] 60S ribosomal protein L37; [GO:0006412] translation22.180.8339
11 Mapoly0153s0035 [PF01381] Helix-turn-helix; [GO:0043565] sequence-specific DNA binding; [K03627] putative transcription factor; [KOG3398] Transcription factor MBF1; [PTHR10245] ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 (MULTIPROTEIN BRIDGING FACTOR 1); [PF08523] Multiprotein bridging factor 125.300.8319
12 Mapoly0022s0158 [PF09835] Uncharacterized protein conserved in bacteria (DUF2062)26.830.7134
13 Mapoly0045s0110 [GO:0005737] cytoplasm; [PF04670] Gtr1/RagA G protein conserved region; [GO:0005634] nucleus; [GO:0005525] GTP binding28.500.6525
14 Mapoly0003s0257 [GO:0005840] ribosome; [GO:0005515] protein binding; [K02927] large subunit ribosomal protein L40e; [GO:0003735] structural constituent of ribosome; [KOG0003] Ubiquitin/60s ribosomal protein L40 fusion; [PF00240] Ubiquitin family; [PTHR10666] UBIQUITIN; [GO:0006412] translation; [PF01020] Ribosomal L40e family31.750.8253
15 Mapoly0027s0033 [PTHR31832] FAMILY NOT NAMED; [GO:0008270] zinc ion binding; [GO:0005622] intracellular; [PF00643] B-box zinc finger32.310.7345
16 Mapoly0102s0017 [K13343] peroxin-14; [GO:0016560] protein import into peroxisome matrix, docking; [KOG2629] Peroxisomal membrane anchor protein (peroxin); [GO:0005515] protein binding; [GO:0005778] peroxisomal membrane; [PTHR23058:SF0] SUBFAMILY NOT NAMED; [PTHR23058] PEROXISOMAL MEMBRANE PROTEIN PEX14; [PF04695] Peroxisomal membrane anchor protein (Pex14p) conserved region33.470.7798
17 Mapoly0083s0045 [PTHR11079] CYTOSINE DEAMINASE; [GO:0016787] hydrolase activity; [PF00383] Cytidine and deoxycytidylate deaminase zinc-binding region; [GO:0008270] zinc ion binding; [KOG1018] Cytosine deaminase FCY1 and related enzymes; [PTHR11079:SF25] SUBFAMILY NOT NAMED34.120.7626
18 Mapoly0055s0047 [PF03358] NADPH-dependent FMN reductase; [GO:0016491] oxidoreductase activity; [KOG3135] 1,4-benzoquinone reductase-like; Trp repressor binding protein-like/protoplast-secreted protein; [PTHR30546] FLAVODOXIN-RELATED PROTEIN WRBA-RELATED34.990.8208
19 Mapoly0006s0174 [GO:0005840] ribosome; [GO:0006414] translational elongation; [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PF00428] 60s Acidic ribosomal protein37.840.8245
20 Mapoly0055s0058 [K07936] GTP-binding nuclear protein Ran; [GO:0007264] small GTPase mediated signal transduction; [PF00071] Ras family; [PTHR24071] FAMILY NOT NAMED; [GO:0005525] GTP binding; [KOG0096] GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily40.640.7544
21 Mapoly0078s0021 [PTHR23153] UBX-RELATED41.240.7299
22 Mapoly0133s0026 -41.350.7862
23 Mapoly0012s0093 [PTHR12878] NADH-UBIQUINONE OXIDOREDUCTASE B8 SUBUNIT; [1.6.99.3] NADH dehydrogenase.; [KOG3446] NADH:ubiquinone oxidoreductase NDUFA2/B8 subunit; [PF05047] Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain; [K03946] NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 2 [EC:1.6.5.3 1.6.99.3]; [1.6.5.3] NADH:ubiquinone reductase (H(+)-translocating).49.640.8101
24 Mapoly0077s0052 -51.500.7992
25 Mapoly0158s0031 [GO:0005840] ribosome; [PTHR11700] 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER; [K02969] small subunit ribosomal protein S20e; [GO:0003735] structural constituent of ribosome; [KOG0900] 40S ribosomal protein S20; [GO:0006412] translation; [PF00338] Ribosomal protein S10p/S20e51.870.8203
26 Mapoly0053s0096 -52.920.8201
27 Mapoly0006s0067 [PTHR31339] FAMILY NOT NAMED; [PF10183] ESSS subunit of NADH:ubiquinone oxidoreductase (complex I)53.670.8080
28 Mapoly0033s0117 [PTHR11721:SF3] SUBFAMILY NOT NAMED; [PF00828] Ribosomal protein L18e/L15; [PTHR11721] 60S RIBOSOMAL PROTEIN L27A; [K02900] large subunit ribosomal protein L27Ae; [KOG1742] 60s ribosomal protein L15/L2754.540.8124
29 Mapoly0013s0139 [GO:0005840] ribosome; [KOG1754] 40S ribosomal protein S15/S22; [PTHR11758] 30S RIBOSOMAL PROTEIN S8; [GO:0003735] structural constituent of ribosome; [K02957] small subunit ribosomal protein S15Ae; [PF00410] Ribosomal protein S8; [GO:0006412] translation56.000.8154
30 Mapoly0020s0108 [PTHR12022] UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN; [K00417] ubiquinol-cytochrome c reductase subunit 7 [EC:1.10.2.2]; [KOG3440] Ubiquinol cytochrome c reductase, subunit QCR7; [PF02271] Ubiquinol-cytochrome C reductase complex 14kD subunit; [GO:0006122] mitochondrial electron transport, ubiquinol to cytochrome c; [GO:0005750] mitochondrial respiratory chain complex III; [PTHR12022:SF0] SUBFAMILY NOT NAMED; [1.10.2.2] Ubiquinol--cytochrome-c reductase.56.120.8102
31 Mapoly0085s0067 [PF02238] Cytochrome c oxidase subunit VIIa; [GO:0005746] mitochondrial respiratory chain; [GO:0009055] electron carrier activity; [GO:0004129] cytochrome-c oxidase activity56.760.8113
32 Mapoly0153s0010 [PTHR19359] CYTOCHROME B5; [GO:0020037] heme binding; [KOG0537] Cytochrome b5; [PF00173] Cytochrome b5-like Heme/Steroid binding domain59.160.8065
33 Mapoly0080s0013 [GO:0003677] DNA binding; [PTHR10840] PROGRAMMED CELL DEATH PROTEIN 5; [KOG3431] Apoptosis-related protein/predicted DNA-binding protein; [PF01984] Double-stranded DNA-binding domain60.000.7892
34 Mapoly0028s0135 [GO:0046907] intracellular transport; [PTHR23138] RAN BINDING PROTEIN; [PF00638] RanBP1 domain; [KOG0864] Ran-binding protein RANBP1 and related RanBD domain proteins60.030.7579
35 Mapoly0082s0039 [PTHR10657] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [KOG3258] Parvulin-like peptidyl-prolyl cis-trans isomerase; [K09579] peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [EC:5.2.1.8]; [GO:0016853] isomerase activity; [5.2.1.8] Peptidylprolyl isomerase.; [PF00639] PPIC-type PPIASE domain61.970.7997
36 Mapoly0065s0019 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [K02905] large subunit ribosomal protein L29e; [GO:0005622] intracellular; [GO:0006412] translation; [PTHR12884] 60S RIBOSOMAL PROTEIN L29; [PF01779] Ribosomal L29e protein family62.770.8106
37 Mapoly0042s0066 [PF09713] Plant protein 1589 of unknown function (A_thal_3526); [PTHR31871] FAMILY NOT NAMED63.280.6886
38 Mapoly0043s0018 [GO:0005840] ribosome; [KOG3449] 60S acidic ribosomal protein P2; [GO:0006414] translational elongation; [PTHR21141] 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PF00428] 60s Acidic ribosomal protein63.320.8113
39 Mapoly0146s0043 [PF00887] Acyl CoA binding protein; [GO:0000062] fatty-acyl-CoA binding; [PTHR23310] ACYL-COA-BINDING PROTEIN, ACBP63.480.7841
40 Mapoly0002s0249 [GO:0006289] nucleotide-excision repair; [GO:0005515] protein binding; [KOG0011] Nucleotide excision repair factor NEF2, RAD23 component; [PTHR10621] UV EXCISION REPAIR PROTEIN RAD23; [PF09280] XPC-binding domain; [PF00627] UBA/TS-N domain; [PF00240] Ubiquitin family; [GO:0003684] damaged DNA binding; [GO:0043161] proteasomal ubiquitin-dependent protein catabolic process; [K10839] UV excision repair protein RAD2366.000.7487
41 Mapoly0007s0249 [PTHR13516:SF0] SUBFAMILY NOT NAMED; [PTHR13516] RIBONUCLEASE P 25KDA SUBUNIT-RELATED; [PF01918] Alba; [GO:0003676] nucleic acid binding; [KOG2567] Uncharacterized conserved protein66.100.7043
42 Mapoly0020s0150 [GO:0005840] ribosome; [KOG3418] 60S ribosomal protein L27; [PF01777] Ribosomal L27e protein family; [K02901] large subunit ribosomal protein L27e; [PTHR10497] 60S RIBOSOMAL PROTEIN L27; [GO:0003735] structural constituent of ribosome; [GO:0005622] intracellular; [PTHR10497:SF0] 60S RIBOSOMAL PROTEIN L27; [GO:0006412] translation66.970.8097
43 Mapoly0008s0043 [KOG0005] Ubiquitin-like protein; [GO:0005515] protein binding; [PF00240] Ubiquitin family; [PTHR10666] UBIQUITIN67.840.7855
44 Mapoly0054s0004 [GO:0008080] N-acetyltransferase activity; [K00670] peptide alpha-N-acetyltransferase [EC:2.3.1.88]; [PF00583] Acetyltransferase (GNAT) family; [2.3.1.88] Peptide alpha-N-acetyltransferase.; [KOG3234] Acetyltransferase, (GNAT) family; [PTHR23091] N-TERMINAL ACETYLTRANSFERASE70.720.7716
45 Mapoly0090s0017 -70.960.7884
46 Mapoly0014s0159 [GO:0005840] ribosome; [GO:0003735] structural constituent of ribosome; [PTHR10496] 40S RIBOSOMAL PROTEIN S24; [PF01282] Ribosomal protein S24e; [GO:0005622] intracellular; [K02974] small subunit ribosomal protein S24e; [GO:0006412] translation; [KOG3424] 40S ribosomal protein S2471.930.8063
47 Mapoly0054s0044 [GO:0005840] ribosome; [K02872] large subunit ribosomal protein L13Ae; [PTHR11545:SF3] 60S RIBOSOMAL PROTEIN L13A; [KOG3204] 60S ribosomal protein L13a; [GO:0003735] structural constituent of ribosome; [GO:0015934] large ribosomal subunit; [PTHR11545] RIBOSOMAL PROTEIN L13; [GO:0006412] translation; [PF00572] Ribosomal protein L1373.300.8055
48 Mapoly0052s0077 [GO:0016020] membrane; [PTHR11654] OLIGOPEPTIDE TRANSPORTER-RELATED; [PF00854] POT family; [KOG1237] H+/oligopeptide symporter; [GO:0006810] transport; [GO:0005215] transporter activity74.890.5843
49 Mapoly0001s0014 [GO:0005840] ribosome; [GO:0003723] RNA binding; [KOG3181] 40S ribosomal protein S3; [PF07650] KH domain; [PF00189] Ribosomal protein S3, C-terminal domain; [GO:0006412] translation; [K02985] small subunit ribosomal protein S3e; [GO:0003735] structural constituent of ribosome; [PTHR11760] 30S/40S RIBOSOMAL PROTEIN S375.100.8005
50 Mapoly0085s0036 [KOG3309] Ferredoxin; [PTHR23426] FERREDOXIN/ADRENODOXIN75.300.7916
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