Guide Gene

Gene ID
Mapoly0003s0274
Organism
Marchantia polymorpha
Platform ID
Mpo
Description
[GO:0005737] cytoplasm; [PF04055] Radical SAM superfamily; [PTHR30544] 23S RRNA METHYLTRANSFERASE; [PF13394] 4Fe-4S single cluster domain; [GO:0008173] RNA methyltransferase activity; [GO:0003824] catalytic activity; [GO:0006364] rRNA processing; [GO:0051536] iron-sulfur cluster binding

Coexpressed Gene List

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Marchantia polymorpha
Rank Gene ID Description MR PCC
Guide Mapoly0003s0274 [GO:0005737] cytoplasm; [PF04055] Radical SAM superfamily; [PTHR30544] 23S RRNA METHYLTRANSFERASE; [PF13394] 4Fe-4S single cluster domain; [GO:0008173] RNA methyltransferase activity; [GO:0003824] catalytic activity; [GO:0006364] rRNA processing; [GO:0051536] iron-sulfur cluster binding 0.00 1.0000
1 Mapoly0066s0105 [3.1.3.11] Fructose-bisphosphatase.; [GO:0005975] carbohydrate metabolic process; [GO:0042132] fructose 1,6-bisphosphate 1-phosphatase activity; [PTHR11556] FRUCTOSE-1,6-BISPHOSPHATASE-RELATED; [GO:0042578] phosphoric ester hydrolase activity; [K03841] fructose-1,6-bisphosphatase I [EC:3.1.3.11]; [PF00316] Fructose-1-6-bisphosphatase; [KOG1458] Fructose-1,6-bisphosphatase2.240.7965
2 Mapoly0122s0019 [GO:0003723] RNA binding; [PTHR10631] N(2),N(2)-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE; [K00555] tRNA (guanine-N2-)-methyltransferase [EC:2.1.1.32]; [2.1.1.32] Transferred entry: 2.1.1.213, 2.1.1.214, 2.1.1.215 and 2.1.1.216.; [GO:0008033] tRNA processing; [PF02005] N2,N2-dimethylguanosine tRNA methyltransferase; [GO:0004809] tRNA (guanine-N2-)-methyltransferase activity6.930.7512
3 Mapoly0024s0117 -8.490.8364
4 Mapoly0086s0021 [PF00226] DnaJ domain; [PTHR24077] FAMILY NOT NAMED9.700.8195
5 Mapoly0053s0107 [KOG1575] Voltage-gated shaker-like K+ channel, subunit beta/KCNAB; [PTHR11732] ALDO/KETO REDUCTASE; [PF00248] Aldo/keto reductase family15.590.7779
6 Mapoly0004s0030 [PTHR19370] NADH-CYTOCHROME B5 REDUCTASE; [GO:0055114] oxidation-reduction process; [KOG0534] NADH-cytochrome b-5 reductase; [PF00175] Oxidoreductase NAD-binding domain; [GO:0016491] oxidoreductase activity15.780.8078
7 Mapoly0142s0028 [KOG4409] Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily); [PTHR10992] ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN; [PF00561] alpha/beta hydrolase fold16.090.7826
8 Mapoly0025s0103 [GO:0015035] protein disulfide oxidoreductase activity; [GO:0045454] cell redox homeostasis; [PF00085] Thioredoxin; [GO:0006662] glycerol ether metabolic process; [KOG0907] Thioredoxin; [PTHR10438] THIOREDOXIN17.440.7976
9 Mapoly0051s0032 [PTHR32060] FAMILY NOT NAMED; [PF03572] Peptidase family S41; [PF00595] PDZ domain (Also known as DHR or GLGF); [GO:0008236] serine-type peptidase activity; [GO:0005515] protein binding; [GO:0006508] proteolysis18.330.7610
10 Mapoly0049s0106 [GO:0051087] chaperone binding; [PF02179] BAG domain18.970.7208
11 Mapoly0092s0018 [GO:0009523] photosystem II; [PTHR31407] FAMILY NOT NAMED; [GO:0019898] extrinsic to membrane; [GO:0009654] oxygen evolving complex; [PF01789] PsbP; [GO:0005509] calcium ion binding; [GO:0015979] photosynthesis19.180.6744
12 Mapoly0119s0032 [GO:0008168] methyltransferase activity; [PTHR10108] METHYLTRANSFERASE; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process21.840.6817
13 Mapoly0098s0024 [PTHR12735:SF6] BSL5715 PROTEIN; [PTHR12735] BOLA-LIKE PROTEIN-RELATED; [KOG3348] BolA (bacterial stress-induced morphogen)-related protein; [PF01722] BolA-like protein22.140.7622
14 Mapoly0096s0074 [KOG2702] Predicted panthothenate kinase/uridine kinase-related protein; [PTHR10285] URIDINE KINASE; [PF13238] AAA domain29.730.6615
15 Mapoly0049s0020 [PF12159] Protein of unknown function (DUF3593)31.080.6893
16 Mapoly0009s0214 [PF05421] Protein of unknown function (DUF751)32.950.7925
17 Mapoly0061s0036 [GO:0008168] methyltransferase activity; [PTHR10108] METHYLTRANSFERASE; [PF08241] Methyltransferase domain; [GO:0008152] metabolic process38.670.7518
18 Mapoly0041s0070 [GO:0055114] oxidation-reduction process; [KOG2742] Predicted oxidoreductase; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [PTHR22604:SF53] SUBFAMILY NOT NAMED; [PF01408] Oxidoreductase family, NAD-binding Rossmann fold; [PF02894] Oxidoreductase family, C-terminal alpha/beta domain; [PTHR22604] OXIDOREDUCTASES38.960.5896
19 Mapoly0139s0002 [PTHR10516] PEPTIDYL-PROLYL CIS-TRANS ISOMERASE; [KOG0552] FKBP-type peptidyl-prolyl cis-trans isomerase; [GO:0006457] protein folding; [PTHR10516:SF142] SUBFAMILY NOT NAMED; [PF00254] FKBP-type peptidyl-prolyl cis-trans isomerase41.670.7811
20 Mapoly0136s0011 [GO:0009055] electron carrier activity; [PF00111] 2Fe-2S iron-sulfur cluster binding domain; [GO:0051536] iron-sulfur cluster binding; [PTHR23426] FERREDOXIN/ADRENODOXIN46.100.6951
21 Mapoly0093s0080 [GO:0006396] RNA processing; [GO:0003723] RNA binding; [GO:0001522] pseudouridine synthesis; [GO:0009451] RNA modification; [GO:0009982] pseudouridine synthase activity; [PTHR13767] TRNA-PSEUDOURIDINE SYNTHASE; [K03177] tRNA pseudouridine synthase B [EC:5.4.99.12]; [5.4.99.12] tRNA pseudouridine(38-40) synthase.; [PTHR13767:SF2] TRNA PSEUDOURIDINE SYNTHASE B; [PF01509] TruB family pseudouridylate synthase (N terminal domain)46.990.7328
22 Mapoly0085s0037 [PTHR12234] FORMIMINOTRANSFERASE-CYCLODEAMINASE; [GO:0005542] folic acid binding; [PF07837] Formiminotransferase domain, N-terminal subdomain; [GO:0008152] metabolic process; [GO:0016740] transferase activity48.370.7483
23 Mapoly0019s0130 -49.400.7775
24 Mapoly0084s0078 [PF01926] 50S ribosome-binding GTPase; [KOG1491] Predicted GTP-binding protein (ODN superfamily); [PF06071] Protein of unknown function (DUF933); [K06942] ribosomal RNA large subunit methyltransferase N [EC:2.1.1.-]; [PTHR23305] GTP-BINDING PROTEIN-RELATED; [GO:0005525] GTP binding52.870.7633
25 Mapoly0001s0404 [1.8.1.7] Glutathione-disulfide reductase.; [GO:0050660] flavin adenine dinucleotide binding; [KOG0405] Pyridine nucleotide-disulphide oxidoreductase; [PTHR22912] DISULFIDE OXIDOREDUCTASE; [GO:0055114] oxidation-reduction process; [GO:0045454] cell redox homeostasis; [PF00070] Pyridine nucleotide-disulphide oxidoreductase; [GO:0016491] oxidoreductase activity; [K00383] glutathione reductase (NADPH) [EC:1.8.1.7]; [PF02852] Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; [PF07992] Pyridine nucleotide-disulphide oxidoreductase53.290.7163
26 Mapoly0033s0090 -55.210.7634
27 Mapoly0011s0142 [PF10184] Uncharacterized conserved protein (DUF2358)55.270.7317
28 Mapoly0022s0159 -55.790.6455
29 Mapoly0001s0328 -56.120.6609
30 Mapoly0003s0225 [PTHR12770] FAMILY NOT NAMED; [PTHR12770:SF3] GB DEF: MRNA, COMPLETE CDS, CLONE: RAFL24-09-C04; [PF04884] Vitamin B6 photo-protection and homoeostasis; [KOG4249] Uncharacterized conserved protein57.390.6748
31 Mapoly0008s0035 -58.660.7388
32 Mapoly0055s0013 [KOG0725] Reductases with broad range of substrate specificities; [GO:0016491] oxidoreductase activity; [GO:0008152] metabolic process; [PF00106] short chain dehydrogenase; [PTHR24314] FAMILY NOT NAMED61.800.7569
33 Mapoly0049s0135 -64.400.7749
34 Mapoly0030s0153 [PF13460] NADH(P)-binding; [PTHR14194] NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED68.150.7389
35 Mapoly0006s0053 -68.770.7543
36 Mapoly0056s0130 [K01104] protein-tyrosine phosphatase [EC:3.1.3.48]; [GO:0006470] protein dephosphorylation; [KOG3217] Protein tyrosine phosphatase; [PTHR11717] LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE; [PTHR11717:SF7] LOW MOLECULAR WEIGHT PROTEIN-TYROSINE-PHOSPHATASE; [GO:0004725] protein tyrosine phosphatase activity; [3.1.3.48] Protein-tyrosine-phosphatase.; [PF01451] Low molecular weight phosphotyrosine protein phosphatase69.200.7552
37 Mapoly0074s0037 [KOG1575] Voltage-gated shaker-like K+ channel, subunit beta/KCNAB; [PTHR11732:SF7] ALDO-KETO REDUCTASE; [PTHR11732] ALDO/KETO REDUCTASE; [PF00248] Aldo/keto reductase family70.610.7580
38 Mapoly0067s0085 [GO:0005524] ATP binding; [KOG2355] Predicted ABC-type transport, ATPase component/CCR4 associated factor; [K12608] CCR4-NOT complex subunit CAF16; [GO:0016887] ATPase activity; [PTHR12847:SF6] SUBFAMILY NOT NAMED; [PTHR12847] ATP-BINDING CASSETTE (ABC) TRANSPORTER-RELATED; [PF00005] ABC transporter72.190.6706
39 Mapoly0024s0023 [PTHR20854] INOSITOL MONOPHOSPHATASE; [GO:0046854] phosphatidylinositol phosphorylation; [PF00459] Inositol monophosphatase family; [K01092] myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]; [3.1.3.25] Inositol-phosphate phosphatase.; [KOG2951] Inositol monophosphatase72.970.6971
40 Mapoly0162s0018 [GO:0005840] ribosome; [PF00297] Ribosomal protein L3; [GO:0003735] structural constituent of ribosome; [PTHR11229] 50S RIBOSOMAL PROTEIN L3; [GO:0005622] intracellular; [KOG3141] Mitochondrial/chloroplast ribosomal protein L3; [GO:0006412] translation; [PTHR11229:SF0] SUBFAMILY NOT NAMED74.620.6991
41 Mapoly0213s0011 [PF00574] Clp protease; [3.4.21.92] Endopeptidase Clp.; [K01358] ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]; [PTHR10381] ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT; [KOG0840] ATP-dependent Clp protease, proteolytic subunit76.030.7593
42 Mapoly0213s0005 [5.3.1.6] Ribose-5-phosphate isomerase.; [GO:0009052] pentose-phosphate shunt, non-oxidative branch; [K01807] ribose 5-phosphate isomerase A [EC:5.3.1.6]; [PTHR11934] RIBOSE-5-PHOSPHATE ISOMERASE; [PTHR11934:SF1] RIBOSE 5-PHOSPHATE ISOMERASE; [KOG3075] Ribose 5-phosphate isomerase; [PF06026] Ribose 5-phosphate isomerase A (phosphoriboisomerase A); [GO:0004751] ribose-5-phosphate isomerase activity76.390.7611
43 Mapoly0004s0194 [KOG2947] Carbohydrate kinase; [PF00294] pfkB family carbohydrate kinase; [PTHR10584:SF104] SUBFAMILY NOT NAMED; [PTHR10584] SUGAR KINASE79.130.7463
44 Mapoly0059s0075 -79.250.7563
45 Mapoly0031s0030 [PF02575] YbaB/EbfC DNA-binding family79.320.7505
46 Mapoly0095s0056 [PF08847] Domain of unknown function (DUF1817)79.400.7446
47 Mapoly0021s0074 -81.630.7299
48 Mapoly0158s0034 -82.830.7403
49 Mapoly0075s0030 [GO:0005515] protein binding; [PF00043] Glutathione S-transferase, C-terminal domain; [PF13417] Glutathione S-transferase, N-terminal domain; [KOG0867] Glutathione S-transferase; [PTHR11260] GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING83.070.7175
50 Mapoly0029s0025 -85.490.7363
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